HEADER CELL ADHESION 08-AUG-12 4B60 TITLE STRUCTURE OF RFNBPA(189-505) IN COMPLEX WITH FIBRINOGEN GAMMA CHAIN C- TITLE 2 TERMINAL PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN-BINDING PROTEIN A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N2N3, RESIDUES 189-505; COMPND 5 SYNONYM: RFNBPA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FIBRINOGEN GAMMA CHAIN; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: C-TERMINUS, RESIDUES 421-433; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: REPRESENTS THE LAST 17 C-TERMINAL RESIDUES OF THE COMPND 13 FIBRINOGEN GAMMA CHAIN, ISOFORM GAMMA-A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PETYSBLIC3C; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS CELL ADHESION, FNBPA, FIBRINOGEN, FIBRINOGEN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR V.STEMBERK,O.MOROZ,K.E.ATKIN,J.P.TURKENBURG,J.R.POTTS REVDAT 4 20-DEC-23 4B60 1 REMARK LINK REVDAT 3 14-MAY-14 4B60 1 JRNL REVDAT 2 26-MAR-14 4B60 1 JRNL REVDAT 1 09-OCT-13 4B60 0 JRNL AUTH V.STEMBERK,R.P.JONES,O.MOROZ,K.E.ATKIN,A.M.EDWARDS, JRNL AUTH 2 J.P.TURKENBURG,A.P.LEECH,R.C.MASSEY,J.R.POTTS JRNL TITL EVIDENCE FOR STERIC REGULATION OF FIBRINOGEN BINDING TO JRNL TITL 2 STAPHYLOCOCCUS AUREUS FIBRONECTIN-BINDING PROTEIN A (FNBPA). JRNL REF J.BIOL.CHEM. V. 289 12842 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24627488 JRNL DOI 10.1074/JBC.M113.543546 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 48668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2600 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2629 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4791 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : -0.09000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.414 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4871 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4518 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6594 ; 1.557 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10363 ; 0.777 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 611 ; 6.807 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 246 ;38.439 ;26.220 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 817 ;13.874 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.978 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 747 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5704 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1143 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 345 REMARK 3 RESIDUE RANGE : A 346 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9170 -2.1340 -6.2325 REMARK 3 T TENSOR REMARK 3 T11: 0.0665 T22: 0.0267 REMARK 3 T33: 0.1283 T12: -0.0111 REMARK 3 T13: 0.0073 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 0.3696 L22: 0.3358 REMARK 3 L33: 1.3971 L12: 0.0776 REMARK 3 L13: 0.1470 L23: 0.4151 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0250 S13: -0.0041 REMARK 3 S21: 0.0371 S22: -0.0053 S23: 0.0076 REMARK 3 S31: 0.0227 S32: 0.0064 S33: 0.0046 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 195 B 345 REMARK 3 RESIDUE RANGE : B 346 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0276 23.7180 -17.8594 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0369 REMARK 3 T33: 0.1362 T12: -0.0123 REMARK 3 T13: -0.0070 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 1.0041 L22: 0.4689 REMARK 3 L33: 3.3513 L12: -0.4855 REMARK 3 L13: -1.2147 L23: 0.8812 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: -0.0281 S13: -0.0612 REMARK 3 S21: -0.0395 S22: 0.0485 S23: 0.0472 REMARK 3 S31: 0.0797 S32: 0.1551 S33: -0.0673 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 17 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1957 1.3615 -21.7883 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.0429 REMARK 3 T33: 0.1099 T12: -0.0216 REMARK 3 T13: 0.0013 T23: 0.0534 REMARK 3 L TENSOR REMARK 3 L11: 6.4853 L22: 1.8495 REMARK 3 L33: 21.3794 L12: 1.9621 REMARK 3 L13: 11.1468 L23: 4.6969 REMARK 3 S TENSOR REMARK 3 S11: -0.1037 S12: 0.2550 S13: 0.1975 REMARK 3 S21: -0.2562 S22: 0.0532 S23: 0.0021 REMARK 3 S31: -0.4938 S32: 0.3757 S33: 0.0506 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 17 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1895 26.3707 7.6440 REMARK 3 T TENSOR REMARK 3 T11: 0.0387 T22: 0.0720 REMARK 3 T33: 0.1645 T12: 0.0045 REMARK 3 T13: 0.0369 T23: 0.0647 REMARK 3 L TENSOR REMARK 3 L11: 6.1396 L22: 3.0078 REMARK 3 L33: 26.2738 L12: -2.6554 REMARK 3 L13: -12.3033 L23: 6.6560 REMARK 3 S TENSOR REMARK 3 S11: -0.3767 S12: -0.2437 S13: -0.3838 REMARK 3 S21: 0.2435 S22: -0.1108 S23: 0.1805 REMARK 3 S31: 0.7707 S32: 0.2586 S33: 0.4875 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2001 A 2201 REMARK 3 RESIDUE RANGE : B 2001 B 2196 REMARK 3 RESIDUE RANGE : C 2001 B 2005 REMARK 3 RESIDUE RANGE : D 2001 B 2004 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5164 14.0635 -6.3726 REMARK 3 T TENSOR REMARK 3 T11: 0.0353 T22: 0.0462 REMARK 3 T33: 0.1042 T12: -0.0034 REMARK 3 T13: 0.0020 T23: 0.0542 REMARK 3 L TENSOR REMARK 3 L11: 0.0678 L22: 0.2231 REMARK 3 L33: 0.3241 L12: 0.0684 REMARK 3 L13: 0.0191 L23: 0.1639 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0302 S13: -0.0082 REMARK 3 S21: 0.0018 S22: -0.0034 S23: 0.0145 REMARK 3 S31: 0.0326 S32: 0.0351 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1502 B 1502 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6593 16.6407 -41.8716 REMARK 3 T TENSOR REMARK 3 T11: 0.1128 T22: 0.1163 REMARK 3 T33: 0.0365 T12: -0.0880 REMARK 3 T13: 0.0292 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 189-194, 479-489 AND 504-505 FROM CHAINS A REMARK 3 AND B ARE ABSENT AND RESIDUES 1-3 FORM THE C CHAIN AND 1-5 FROM REMARK 3 THE D CHAIN ARE ABSENT REMARK 4 REMARK 4 4B60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51268 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 58.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4B5Z REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2K MME 25%, 0.2 M CA AC, REMARK 280 ISOPROPANOL 10% REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 185 REMARK 465 PRO A 186 REMARK 465 ALA A 187 REMARK 465 MET A 188 REMARK 465 ALA A 189 REMARK 465 LYS A 190 REMARK 465 VAL A 191 REMARK 465 GLU A 192 REMARK 465 THR A 193 REMARK 465 GLY A 194 REMARK 465 GLN A 480 REMARK 465 LEU A 481 REMARK 465 TYR A 482 REMARK 465 LYS A 483 REMARK 465 TYR A 484 REMARK 465 TYR A 485 REMARK 465 TYR A 486 REMARK 465 ASP A 487 REMARK 465 ARG A 488 REMARK 465 LYS A 504 REMARK 465 ALA A 505 REMARK 465 GLY B 185 REMARK 465 PRO B 186 REMARK 465 ALA B 187 REMARK 465 MET B 188 REMARK 465 ALA B 189 REMARK 465 LYS B 190 REMARK 465 VAL B 191 REMARK 465 GLU B 192 REMARK 465 THR B 193 REMARK 465 GLY B 194 REMARK 465 SER B 431 REMARK 465 GLY B 432 REMARK 465 GLU B 467 REMARK 465 GLU B 479 REMARK 465 GLN B 480 REMARK 465 LEU B 481 REMARK 465 TYR B 482 REMARK 465 LYS B 483 REMARK 465 TYR B 484 REMARK 465 TYR B 485 REMARK 465 TYR B 486 REMARK 465 ASP B 487 REMARK 465 ARG B 488 REMARK 465 GLY B 489 REMARK 465 SER B 502 REMARK 465 ASN B 503 REMARK 465 LYS B 504 REMARK 465 ALA B 505 REMARK 465 GLY C 1 REMARK 465 GLU C 2 REMARK 465 GLY C 3 REMARK 465 GLY D 1 REMARK 465 GLU D 2 REMARK 465 GLY D 3 REMARK 465 GLN D 4 REMARK 465 GLN D 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 261 CD CE NZ REMARK 470 LYS A 266 NZ REMARK 470 ASN A 317 CG OD1 ND2 REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 LYS A 411 CE NZ REMARK 470 SER A 431 CA CB OG REMARK 470 GLU A 447 CG CD OE1 OE2 REMARK 470 GLU A 479 CB CG CD OE1 OE2 REMARK 470 LYS B 216 CE NZ REMARK 470 LYS B 336 CE NZ REMARK 470 SER B 377 CB OG REMARK 470 GLU B 447 CG CD OE1 OE2 REMARK 470 HIS B 477 CB REMARK 470 PRO B 478 C REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 419 OG SER A 421 2.09 REMARK 500 O HOH A 2056 O HOH A 2074 2.13 REMARK 500 O SER B 388 O HOH B 2158 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 213 35.32 38.43 REMARK 500 LEU A 278 -168.78 -106.21 REMARK 500 GLU A 326 -9.10 73.76 REMARK 500 ASN A 371 -86.51 -106.22 REMARK 500 SER A 377 43.89 38.14 REMARK 500 VAL A 413 9.20 85.32 REMARK 500 ASN B 215 34.24 -99.87 REMARK 500 ARG B 260 64.24 -116.79 REMARK 500 LEU B 278 -168.35 -108.23 REMARK 500 GLU B 326 -13.89 73.46 REMARK 500 ASN B 371 -109.47 -106.97 REMARK 500 THR B 376 -77.58 -106.91 REMARK 500 VAL B 413 90.90 70.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 292 OE2 REMARK 620 2 ASP A 293 OD1 83.4 REMARK 620 3 GLU B 292 OE2 174.1 92.4 REMARK 620 4 ASP B 293 OD1 97.6 152.9 84.2 REMARK 620 5 HOH B2096 O 91.2 77.2 83.8 75.7 REMARK 620 6 HOH B2097 O 87.8 135.2 98.1 71.8 147.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B5Z RELATED DB: PDB REMARK 900 STRUCTURE OF THE APO-RFNBPA(189-505) FROM STAPHYLOCOCCUS AUREUS REMARK 999 REMARK 999 SEQUENCE REMARK 999 GPAM N-TERMINAL RESISDUES FROM VECTOR REMARK 999 THE LAST 17 C-TERMINAL RESIDUES OF THE FIBRINOGEN GAMMA REMARK 999 CHAIN, ISOFORM GAMMA-A DBREF 4B60 A 189 505 UNP P14738 FNBA_STAA8 189 505 DBREF 4B60 B 189 505 UNP P14738 FNBA_STAA8 189 505 DBREF 4B60 C 1 17 UNP P02679 FIBG_HUMAN 421 437 DBREF 4B60 D 1 17 UNP P02679 FIBG_HUMAN 421 437 SEQADV 4B60 GLY A 185 UNP P14738 EXPRESSION TAG SEQADV 4B60 PRO A 186 UNP P14738 EXPRESSION TAG SEQADV 4B60 ALA A 187 UNP P14738 EXPRESSION TAG SEQADV 4B60 MET A 188 UNP P14738 EXPRESSION TAG SEQADV 4B60 GLY B 185 UNP P14738 EXPRESSION TAG SEQADV 4B60 PRO B 186 UNP P14738 EXPRESSION TAG SEQADV 4B60 ALA B 187 UNP P14738 EXPRESSION TAG SEQADV 4B60 MET B 188 UNP P14738 EXPRESSION TAG SEQRES 1 A 321 GLY PRO ALA MET ALA LYS VAL GLU THR GLY THR ASP VAL SEQRES 2 A 321 THR SER LYS VAL THR VAL GLU ILE GLY SER ILE GLU GLY SEQRES 3 A 321 HIS ASN ASN THR ASN LYS VAL GLU PRO HIS ALA GLY GLN SEQRES 4 A 321 ARG ALA VAL LEU LYS TYR LYS LEU LYS PHE GLU ASN GLY SEQRES 5 A 321 LEU HIS GLN GLY ASP TYR PHE ASP PHE THR LEU SER ASN SEQRES 6 A 321 ASN VAL ASN THR HIS GLY VAL SER THR ALA ARG LYS VAL SEQRES 7 A 321 PRO GLU ILE LYS ASN GLY SER VAL VAL MET ALA THR GLY SEQRES 8 A 321 GLU VAL LEU GLU GLY GLY LYS ILE ARG TYR THR PHE THR SEQRES 9 A 321 ASN ASP ILE GLU ASP LYS VAL ASP VAL THR ALA GLU LEU SEQRES 10 A 321 GLU ILE ASN LEU PHE ILE ASP PRO LYS THR VAL GLN THR SEQRES 11 A 321 ASN GLY ASN GLN THR ILE THR SER THR LEU ASN GLU GLU SEQRES 12 A 321 GLN THR SER LYS GLU LEU ASP VAL LYS TYR LYS ASP GLY SEQRES 13 A 321 ILE GLY ASN TYR TYR ALA ASN LEU ASN GLY SER ILE GLU SEQRES 14 A 321 THR PHE ASN LYS ALA ASN ASN ARG PHE SER HIS VAL ALA SEQRES 15 A 321 PHE ILE LYS PRO ASN ASN GLY LYS THR THR SER VAL THR SEQRES 16 A 321 VAL THR GLY THR LEU MET LYS GLY SER ASN GLN ASN GLY SEQRES 17 A 321 ASN GLN PRO LYS VAL ARG ILE PHE GLU TYR LEU GLY ASN SEQRES 18 A 321 ASN GLU ASP ILE ALA LYS SER VAL TYR ALA ASN THR THR SEQRES 19 A 321 ASP THR SER LYS PHE LYS GLU VAL THR SER ASN MET SER SEQRES 20 A 321 GLY ASN LEU ASN LEU GLN ASN ASN GLY SER TYR SER LEU SEQRES 21 A 321 ASN ILE GLU ASN LEU ASP LYS THR TYR VAL VAL HIS TYR SEQRES 22 A 321 ASP GLY GLU TYR LEU ASN GLY THR ASP GLU VAL ASP PHE SEQRES 23 A 321 ARG THR GLN MET VAL GLY HIS PRO GLU GLN LEU TYR LYS SEQRES 24 A 321 TYR TYR TYR ASP ARG GLY TYR THR LEU THR TRP ASP ASN SEQRES 25 A 321 GLY LEU VAL LEU TYR SER ASN LYS ALA SEQRES 1 B 321 GLY PRO ALA MET ALA LYS VAL GLU THR GLY THR ASP VAL SEQRES 2 B 321 THR SER LYS VAL THR VAL GLU ILE GLY SER ILE GLU GLY SEQRES 3 B 321 HIS ASN ASN THR ASN LYS VAL GLU PRO HIS ALA GLY GLN SEQRES 4 B 321 ARG ALA VAL LEU LYS TYR LYS LEU LYS PHE GLU ASN GLY SEQRES 5 B 321 LEU HIS GLN GLY ASP TYR PHE ASP PHE THR LEU SER ASN SEQRES 6 B 321 ASN VAL ASN THR HIS GLY VAL SER THR ALA ARG LYS VAL SEQRES 7 B 321 PRO GLU ILE LYS ASN GLY SER VAL VAL MET ALA THR GLY SEQRES 8 B 321 GLU VAL LEU GLU GLY GLY LYS ILE ARG TYR THR PHE THR SEQRES 9 B 321 ASN ASP ILE GLU ASP LYS VAL ASP VAL THR ALA GLU LEU SEQRES 10 B 321 GLU ILE ASN LEU PHE ILE ASP PRO LYS THR VAL GLN THR SEQRES 11 B 321 ASN GLY ASN GLN THR ILE THR SER THR LEU ASN GLU GLU SEQRES 12 B 321 GLN THR SER LYS GLU LEU ASP VAL LYS TYR LYS ASP GLY SEQRES 13 B 321 ILE GLY ASN TYR TYR ALA ASN LEU ASN GLY SER ILE GLU SEQRES 14 B 321 THR PHE ASN LYS ALA ASN ASN ARG PHE SER HIS VAL ALA SEQRES 15 B 321 PHE ILE LYS PRO ASN ASN GLY LYS THR THR SER VAL THR SEQRES 16 B 321 VAL THR GLY THR LEU MET LYS GLY SER ASN GLN ASN GLY SEQRES 17 B 321 ASN GLN PRO LYS VAL ARG ILE PHE GLU TYR LEU GLY ASN SEQRES 18 B 321 ASN GLU ASP ILE ALA LYS SER VAL TYR ALA ASN THR THR SEQRES 19 B 321 ASP THR SER LYS PHE LYS GLU VAL THR SER ASN MET SER SEQRES 20 B 321 GLY ASN LEU ASN LEU GLN ASN ASN GLY SER TYR SER LEU SEQRES 21 B 321 ASN ILE GLU ASN LEU ASP LYS THR TYR VAL VAL HIS TYR SEQRES 22 B 321 ASP GLY GLU TYR LEU ASN GLY THR ASP GLU VAL ASP PHE SEQRES 23 B 321 ARG THR GLN MET VAL GLY HIS PRO GLU GLN LEU TYR LYS SEQRES 24 B 321 TYR TYR TYR ASP ARG GLY TYR THR LEU THR TRP ASP ASN SEQRES 25 B 321 GLY LEU VAL LEU TYR SER ASN LYS ALA SEQRES 1 C 17 GLY GLU GLY GLN GLN HIS HIS LEU GLY GLY ALA LYS GLN SEQRES 2 C 17 ALA GLY ASP VAL SEQRES 1 D 17 GLY GLU GLY GLN GLN HIS HIS LEU GLY GLY ALA LYS GLN SEQRES 2 D 17 ALA GLY ASP VAL HET CA B1502 1 HETNAM CA CALCIUM ION FORMUL 5 CA CA 2+ FORMUL 6 HOH *406(H2 O) HELIX 1 1 VAL A 197 SER A 199 5 3 HELIX 2 2 GLY A 210 THR A 214 5 5 HELIX 3 3 GLU A 218 HIS A 220 5 3 HELIX 4 4 ASN A 289 GLU A 292 5 4 HELIX 5 5 ASN A 405 ILE A 409 5 5 HELIX 6 6 THR A 427 GLY A 432 5 6 HELIX 7 7 VAL B 197 SER B 199 5 3 HELIX 8 8 GLY B 210 THR B 214 5 5 HELIX 9 9 GLU B 218 HIS B 220 5 3 HELIX 10 10 ASN B 289 GLU B 292 5 4 HELIX 11 11 ASN B 405 ILE B 409 5 5 HELIX 12 12 THR B 427 MET B 430 5 4 SHEET 1 AA 4 VAL A 201 GLU A 209 0 SHEET 2 AA 4 ALA A 225 PHE A 233 -1 O VAL A 226 N GLU A 209 SHEET 3 AA 4 THR A 298 ILE A 307 -1 O ALA A 299 N LEU A 231 SHEET 4 AA 4 VAL A 251 ASN A 252 -1 O ASN A 252 N PHE A 306 SHEET 1 AB 7 LYS A 216 VAL A 217 0 SHEET 2 AB 7 GLU A 327 VAL A 335 1 O ASP A 334 N VAL A 217 SHEET 3 AB 7 GLY A 316 LEU A 324 -1 O GLY A 316 N VAL A 335 SHEET 4 AB 7 TYR A 242 LEU A 247 -1 O THR A 246 N THR A 323 SHEET 5 AB 7 LYS A 282 PHE A 287 -1 O ILE A 283 N PHE A 245 SHEET 6 AB 7 VAL A 270 VAL A 277 -1 O THR A 274 N THR A 286 SHEET 7 AB 7 ILE A 265 ASN A 267 -1 O ILE A 265 N MET A 272 SHEET 1 AC 6 ILE A 341 GLY A 342 0 SHEET 2 AC 6 ALA A 346 ASN A 356 -1 O LEU A 348 N ILE A 341 SHEET 3 AC 6 ARG A 361 PRO A 370 -1 O ARG A 361 N ASN A 356 SHEET 4 AC 6 TYR A 453 GLU A 460 -1 O TYR A 453 N ILE A 368 SHEET 5 AC 6 LYS A 396 TYR A 402 -1 O LYS A 396 N ASP A 458 SHEET 6 AC 6 PHE A 423 GLU A 425 -1 O LYS A 424 N GLU A 401 SHEET 1 AD 6 LEU A 434 LEU A 436 0 SHEET 2 AD 6 TYR A 442 ASN A 448 -1 O SER A 443 N ASN A 435 SHEET 3 AD 6 THR A 375 LYS A 386 -1 N SER A 377 O GLU A 447 SHEET 4 AD 6 ASP A 469 PRO A 478 -1 O ASP A 469 N MET A 385 SHEET 5 AD 6 TYR A 490 TYR A 501 -1 O TYR A 490 N GLY A 476 SHEET 6 AD 6 HIS C 6 ASP C 16 1 O HIS C 7 N THR A 493 SHEET 1 BA 4 VAL B 201 GLU B 209 0 SHEET 2 BA 4 ALA B 225 PHE B 233 -1 O VAL B 226 N GLU B 209 SHEET 3 BA 4 THR B 298 ILE B 307 -1 O ALA B 299 N LEU B 231 SHEET 4 BA 4 VAL B 251 ASN B 252 -1 O ASN B 252 N PHE B 306 SHEET 1 BB 7 LYS B 216 VAL B 217 0 SHEET 2 BB 7 GLU B 327 VAL B 335 1 O ASP B 334 N VAL B 217 SHEET 3 BB 7 GLY B 316 LEU B 324 -1 O GLY B 316 N VAL B 335 SHEET 4 BB 7 TYR B 242 LEU B 247 -1 O THR B 246 N THR B 323 SHEET 5 BB 7 LYS B 282 PHE B 287 -1 O ILE B 283 N PHE B 245 SHEET 6 BB 7 VAL B 270 VAL B 277 -1 O THR B 274 N THR B 286 SHEET 7 BB 7 ILE B 265 ASN B 267 -1 O ILE B 265 N MET B 272 SHEET 1 BC 6 ILE B 341 GLY B 342 0 SHEET 2 BC 6 ALA B 346 ASN B 356 -1 O LEU B 348 N ILE B 341 SHEET 3 BC 6 ARG B 361 PRO B 370 -1 O ARG B 361 N ASN B 356 SHEET 4 BC 6 TYR B 453 GLU B 460 -1 O TYR B 453 N ILE B 368 SHEET 5 BC 6 LYS B 396 TYR B 402 -1 O LYS B 396 N ASP B 458 SHEET 6 BC 6 PHE B 423 GLU B 425 -1 O LYS B 424 N GLU B 401 SHEET 1 BD 6 LEU B 434 LEU B 436 0 SHEET 2 BD 6 TYR B 442 ILE B 446 -1 O SER B 443 N ASN B 435 SHEET 3 BD 6 VAL B 378 LYS B 386 -1 O VAL B 378 N ILE B 446 SHEET 4 BD 6 ASP B 469 VAL B 475 -1 O ASP B 469 N MET B 385 SHEET 5 BD 6 THR B 491 LEU B 500 -1 O LEU B 492 N MET B 474 SHEET 6 BD 6 HIS D 7 GLY D 15 1 O HIS D 7 N THR B 493 LINK OE2 GLU A 292 CA CA B1502 1554 1555 2.18 LINK OD1 ASP A 293 CA CA B1502 1554 1555 2.42 LINK OE2 GLU B 292 CA CA B1502 1555 1555 2.40 LINK OD1 ASP B 293 CA CA B1502 1555 1555 2.38 LINK CA CA B1502 O HOH B2096 1555 1555 2.34 LINK CA CA B1502 O HOH B2097 1555 1555 2.61 SITE 1 AC1 6 GLU A 292 ASP A 293 GLU B 292 ASP B 293 SITE 2 AC1 6 HOH B2096 HOH B2097 CRYST1 37.510 59.050 73.490 91.86 98.05 97.87 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026660 0.003685 0.003970 0.00000 SCALE2 0.000000 0.017096 0.000901 0.00000 SCALE3 0.000000 0.000000 0.013762 0.00000