HEADER TRANSLATION 15-AUG-12 4B6U TITLE SOLUTION STRUCTURE OF EIF4E3 IN COMPLEX WITH M7GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TYPE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EIF-4E TYPE 3, EIF-4E3, EIF4E TYPE 3, EIF4E-3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSLATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.J.OSBORNE,L.VOLPON,J.A.KORNBLATT,B.CULKJOVIC-KRALJCIC,A.BAGUET, AUTHOR 2 K.L.B.BORDEN REVDAT 5 14-JUN-23 4B6U 1 REMARK REVDAT 4 17-JAN-18 4B6U 1 AUTHOR REVDAT 3 04-MAY-16 4B6U 1 ATOM HETATM MASTER REVDAT 2 20-MAR-13 4B6U 1 JRNL REVDAT 1 06-MAR-13 4B6U 0 JRNL AUTH M.J.OSBORNE,L.VOLPON,J.A.KORNBLATT,B.CULJKOVIC-KRALJCIC, JRNL AUTH 2 A.BAGUET,K.L.B.BORDEN JRNL TITL EIF4E3 ACTS AS A TUMOR SUPPRESSOR BY UTILIZING AN ATYPICAL JRNL TITL 2 MODE OF METHYL-7-GUANOSINE CAP RECOGNITION JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 3877 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23431134 JRNL DOI 10.1073/PNAS.1216862110 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : BRUNGER SCHWIETER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053748. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300.15 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 50MM PHOSPHATE, 100MM NACL, REMARK 210 100UM TCEP, NAN3, 90% WATER 10% REMARK 210 D2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW REMARK 210 METHOD USED : XPLOR REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 102.05 50.57 REMARK 500 1 PRO A 4 -179.84 -55.53 REMARK 500 1 ALA A 7 51.78 -147.99 REMARK 500 1 PRO A 9 152.65 -40.27 REMARK 500 1 ASN A 13 -155.75 49.12 REMARK 500 1 GLU A 14 81.29 -156.05 REMARK 500 1 ASP A 17 3.33 -63.35 REMARK 500 1 SER A 21 -136.79 70.65 REMARK 500 1 ALA A 22 83.87 168.36 REMARK 500 1 GLU A 26 87.72 48.63 REMARK 500 1 ALA A 47 178.31 -51.49 REMARK 500 1 LEU A 83 -9.41 -49.32 REMARK 500 1 PRO A 96 92.73 -49.70 REMARK 500 1 LEU A 97 101.70 -56.41 REMARK 500 1 GLU A 100 174.81 -45.71 REMARK 500 1 GLU A 101 -22.78 -37.63 REMARK 500 1 ALA A 104 -13.78 -45.19 REMARK 500 1 GLU A 155 -175.30 -175.99 REMARK 500 1 ALA A 188 -63.00 67.33 REMARK 500 1 VAL A 189 99.44 31.54 REMARK 500 1 ARG A 204 -9.95 62.89 REMARK 500 2 ALA A 7 29.99 45.44 REMARK 500 2 ALA A 8 83.75 -157.06 REMARK 500 2 ALA A 12 -28.57 -166.98 REMARK 500 2 ASN A 13 23.88 -171.04 REMARK 500 2 ALA A 22 -124.19 53.00 REMARK 500 2 PRO A 25 -142.70 -54.42 REMARK 500 2 PRO A 82 170.49 -41.33 REMARK 500 2 ARG A 94 81.78 -63.90 REMARK 500 2 TRP A 98 85.90 44.16 REMARK 500 2 GLU A 100 163.70 -49.87 REMARK 500 2 GLU A 101 -17.35 -49.11 REMARK 500 2 ALA A 104 -17.29 -43.06 REMARK 500 2 LYS A 105 34.73 -94.96 REMARK 500 2 GLU A 155 -165.44 -172.58 REMARK 500 2 SER A 166 -16.80 -46.79 REMARK 500 2 ALA A 188 94.93 40.72 REMARK 500 2 GLU A 196 89.16 -151.03 REMARK 500 2 HIS A 197 42.39 -150.22 REMARK 500 2 HIS A 198 -80.60 54.13 REMARK 500 3 ALA A 8 84.45 -158.40 REMARK 500 3 ASP A 17 -1.73 -59.81 REMARK 500 3 SER A 21 -68.18 62.36 REMARK 500 3 ALA A 22 -116.42 -170.86 REMARK 500 3 PRO A 24 157.39 -39.07 REMARK 500 3 PRO A 76 174.11 -59.45 REMARK 500 3 LEU A 83 -7.53 -50.55 REMARK 500 3 ARG A 84 64.60 -115.27 REMARK 500 3 GLU A 93 109.99 57.38 REMARK 500 3 ARG A 94 133.16 61.90 REMARK 500 REMARK 500 THIS ENTRY HAS 202 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M7G A 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B6V RELATED DB: PDB REMARK 900 THE THIRD MEMBER OF THE EIF4E FAMILY REPRESSES GENE EXPRESSION VIA REMARK 900 A NOVEL MODE OF RECOGNITION OF THE METHYL-7 GUANOSINE CAP MOIETY REMARK 900 RELATED ID: 18667 RELATED DB: BMRB DBREF 4B6U A 1 207 UNP Q9DBB5 IF4E3_MOUSE 1 207 SEQRES 1 A 207 MET ALA LEU PRO PRO ALA ALA ALA PRO PRO GLY ALA ASN SEQRES 2 A 207 GLU PRO LEU ASP LYS ALA LEU SER ALA LEU PRO PRO GLU SEQRES 3 A 207 PRO GLY GLY VAL PRO LEU HIS SER PRO TRP THR PHE TRP SEQRES 4 A 207 LEU ASP ARG SER LEU PRO GLY ALA THR ALA ALA GLU CYS SEQRES 5 A 207 ALA SER ASN LEU LYS LYS ILE TYR THR VAL GLN THR VAL SEQRES 6 A 207 GLN ILE PHE TRP SER VAL TYR ASN ASN ILE PRO PRO VAL SEQRES 7 A 207 THR SER LEU PRO LEU ARG CYS SER TYR HIS LEU MET ARG SEQRES 8 A 207 GLY GLU ARG ARG PRO LEU TRP GLU GLU GLU SER ASN ALA SEQRES 9 A 207 LYS GLY GLY VAL TRP LYS MET LYS VAL PRO LYS ASP SER SEQRES 10 A 207 THR SER THR VAL TRP LYS GLU LEU LEU LEU ALA THR ILE SEQRES 11 A 207 GLY GLU GLN PHE THR ASP CYS ALA ALA ALA ASP ASP GLU SEQRES 12 A 207 ILE ILE GLY VAL SER VAL SER VAL ARG ASP ARG GLU ASP SEQRES 13 A 207 VAL VAL GLN VAL TRP ASN VAL ASN ALA SER LEU VAL GLY SEQRES 14 A 207 GLU ALA THR VAL LEU GLU LYS ILE HIS GLN LEU LEU PRO SEQRES 15 A 207 HIS ILE ALA PHE LYS ALA VAL PHE TYR LYS PRO HIS GLU SEQRES 16 A 207 GLU HIS HIS ALA PHE GLU GLY GLY ARG GLY LYS HIS HET M7G A 208 44 HETNAM M7G 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE FORMUL 2 M7G C11 H19 N5 O11 P2 HELIX 1 1 THR A 48 LEU A 56 1 9 HELIX 2 2 VAL A 65 ILE A 75 1 11 HELIX 3 3 PRO A 77 LEU A 81 5 5 HELIX 4 4 PRO A 96 GLU A 100 5 5 HELIX 5 5 SER A 117 ILE A 130 1 14 HELIX 6 6 GLN A 133 ALA A 138 1 6 HELIX 7 7 ASN A 164 VAL A 168 5 5 HELIX 8 8 THR A 172 LEU A 181 1 10 SHEET 1 AA 7 LYS A 57 THR A 64 0 SHEET 2 AA 7 PRO A 31 ASP A 41 -1 N LEU A 32 O GLN A 63 SHEET 3 AA 7 CYS A 85 ARG A 91 -1 O SER A 86 N ASP A 41 SHEET 4 AA 7 ILE A 144 VAL A 151 -1 O ILE A 145 N ARG A 91 SHEET 5 AA 7 ASP A 156 ASN A 162 -1 O VAL A 157 N SER A 150 SHEET 6 AA 7 GLY A 107 VAL A 113 -1 O GLY A 107 N ASN A 162 SHEET 7 AA 7 LYS A 187 PRO A 193 -1 N LYS A 187 O LYS A 112 SITE 1 AC1 10 ASP A 41 SER A 43 PRO A 45 ALA A 47 SITE 2 AC1 10 CYS A 52 LEU A 97 TRP A 98 ARG A 152 SITE 3 AC1 10 ALA A 199 GLU A 201 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1