HEADER LYASE 30-AUG-12 4B8U TITLE CRYSTAL STRUCTURE OF 3-HYDROXYDECANOYL-ACYL CARRIER PROTEIN TITLE 2 DEHYDRATASE (FABA) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH N- TITLE 3 ISOBUTYL-2-(5-(2-THIENYL)-1,2-OXAZOL-3-YL-)METHOXY)ACETAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYDECANOYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: BETA-HYDROXYDECANOYL THIOESTER DEHYDRASE; COMPND 5 EC: 4.2.1.60; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: TUNER; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PDEST14 KEYWDS LYASE, FATTY ACID BIOSYNTHESIS, INHIBITOR, BACTERIAL VIRULENCE, DRUG KEYWDS 2 DISCOVERY EXPDTA X-RAY DIFFRACTION AUTHOR L.MOYNIE,S.A.MCMAHON,F.G.DUTHIE,R.BRENK,J.H.NAISMITH REVDAT 4 20-DEC-23 4B8U 1 REMARK SHEET REVDAT 3 16-JAN-13 4B8U 1 JRNL REVDAT 2 28-NOV-12 4B8U 1 JRNL REMARK REVDAT 1 26-SEP-12 4B8U 0 JRNL AUTH L.MOYNIE,S.M.LECKIE,S.A.MCMAHON,F.G.DUTHIE,A.KOEHNKE, JRNL AUTH 2 J.W.TAYLOR,M.S.ALPHEY,R.BRENK,A.D.SMITH,J.H.NAISMITH JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM AND INHIBITION OF THE JRNL TITL 2 BETA-HYDROXYDECANOYL-ACYL CARRIER PROTEIN DEHYDRATASE FROM JRNL TITL 3 PSEUDOMONASAERUGINOSA. JRNL REF J.MOL.BIOL. V. 425 365 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23174186 JRNL DOI 10.1016/J.JMB.2012.11.017 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 26426 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1399 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1935 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72000 REMARK 3 B22 (A**2) : 1.39000 REMARK 3 B33 (A**2) : -2.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.866 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.316 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.236 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.720 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6606 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4535 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8932 ; 1.387 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10979 ; 1.134 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 826 ; 7.868 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 294 ;35.942 ;23.299 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1068 ;16.198 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;20.824 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 957 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7429 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1429 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -39.5827 65.6027 6.0631 REMARK 3 T TENSOR REMARK 3 T11: 0.4705 T22: 0.4502 REMARK 3 T33: 0.1830 T12: 0.3905 REMARK 3 T13: -0.0234 T23: 0.0945 REMARK 3 L TENSOR REMARK 3 L11: 3.4542 L22: 3.9551 REMARK 3 L33: 3.1089 L12: -0.9289 REMARK 3 L13: -0.5932 L23: 0.7912 REMARK 3 S TENSOR REMARK 3 S11: 0.5463 S12: 0.6086 S13: 0.0081 REMARK 3 S21: -1.0246 S22: -0.7351 S23: -0.0798 REMARK 3 S31: 0.0892 S32: 0.1016 S33: 0.1888 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 171 REMARK 3 ORIGIN FOR THE GROUP (A): -44.5325 52.3265 23.5894 REMARK 3 T TENSOR REMARK 3 T11: 0.0923 T22: 0.2628 REMARK 3 T33: 0.2732 T12: -0.0223 REMARK 3 T13: -0.0085 T23: -0.0879 REMARK 3 L TENSOR REMARK 3 L11: 2.9656 L22: 4.0253 REMARK 3 L33: 3.3576 L12: -1.2591 REMARK 3 L13: -0.5681 L23: 0.0985 REMARK 3 S TENSOR REMARK 3 S11: 0.3114 S12: 0.0861 S13: -0.1693 REMARK 3 S21: 0.0753 S22: -0.4430 S23: 0.5756 REMARK 3 S31: -0.0572 S32: -0.3178 S33: 0.1316 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 166 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4288 19.8132 -19.6585 REMARK 3 T TENSOR REMARK 3 T11: 0.2214 T22: 0.3121 REMARK 3 T33: 0.3512 T12: -0.0686 REMARK 3 T13: 0.0060 T23: -0.1038 REMARK 3 L TENSOR REMARK 3 L11: 0.7548 L22: 4.4891 REMARK 3 L33: 3.7517 L12: -0.5684 REMARK 3 L13: -0.7392 L23: 0.4632 REMARK 3 S TENSOR REMARK 3 S11: 0.0997 S12: 0.1724 S13: 0.0886 REMARK 3 S21: -0.3852 S22: -0.3870 S23: 0.1270 REMARK 3 S31: -0.1661 S32: -0.3030 S33: 0.2873 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 169 REMARK 3 ORIGIN FOR THE GROUP (A): -33.2614 30.1891 -9.4125 REMARK 3 T TENSOR REMARK 3 T11: 0.2837 T22: 0.6259 REMARK 3 T33: 0.5290 T12: 0.0358 REMARK 3 T13: -0.0897 T23: -0.2927 REMARK 3 L TENSOR REMARK 3 L11: 2.1491 L22: 4.0289 REMARK 3 L33: 3.6179 L12: -1.1196 REMARK 3 L13: -1.2701 L23: 1.5880 REMARK 3 S TENSOR REMARK 3 S11: 0.0805 S12: 0.2059 S13: -0.1250 REMARK 3 S21: -0.1024 S22: -0.5626 S23: 0.6397 REMARK 3 S31: -0.1346 S32: -0.8569 S33: 0.4821 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 3 E 171 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1396 36.9723 23.7666 REMARK 3 T TENSOR REMARK 3 T11: 0.2364 T22: 0.0320 REMARK 3 T33: 0.1360 T12: 0.0272 REMARK 3 T13: -0.0378 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 2.6561 L22: 2.1626 REMARK 3 L33: 4.5545 L12: -0.2947 REMARK 3 L13: -1.1407 L23: -0.3073 REMARK 3 S TENSOR REMARK 3 S11: 0.1174 S12: 0.2160 S13: -0.1298 REMARK 3 S21: -0.0891 S22: -0.1205 S23: -0.1177 REMARK 3 S31: 0.7070 S32: 0.0274 S33: 0.0031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 4B8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.780 REMARK 200 RESOLUTION RANGE LOW (A) : 71.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4FQ9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 5000 13 %, 100 MM SODIUM REMARK 280 CITRATE PH 5.0, LITHIUM SULPHATE 0.1 M REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 56.95000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 56.95000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 71.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -34.81561 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.79880 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ARG B 136 REMARK 465 SER B 137 REMARK 465 MET C 1 REMARK 465 ARG C 136 REMARK 465 SER C 137 REMARK 465 SER C 167 REMARK 465 THR C 168 REMARK 465 ASP C 169 REMARK 465 SER C 170 REMARK 465 PHE C 171 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 ARG D 136 REMARK 465 SER D 137 REMARK 465 SER D 170 REMARK 465 PHE D 171 REMARK 465 MET E 1 REMARK 465 THR E 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP E 96 CE2 TRP E 96 CD2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 74 61.83 -168.00 REMARK 500 SER A 137 -67.10 -138.09 REMARK 500 ASP A 150 52.86 39.32 REMARK 500 ASP A 169 -9.32 -55.08 REMARK 500 ASP B 74 64.69 -169.84 REMARK 500 ASP B 150 49.14 38.74 REMARK 500 ASP C 74 59.44 -162.88 REMARK 500 ASP C 150 49.80 38.95 REMARK 500 ASP D 74 65.26 -167.05 REMARK 500 ASP E 74 62.68 -167.74 REMARK 500 SER E 137 -56.48 -142.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IBK B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1167 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B0B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-HYDROXYDECANOYL-ACYL CARRIER PROTEIN REMARK 900 DEHYDRATASE (FABA) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH 3- REMARK 900 (PYRIDIN-2-YLOXY)ANILINE REMARK 900 RELATED ID: 4B0C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-HYDROXYDECANOYL-ACYL CARRIER PROTEIN REMARK 900 DEHYDRATASE (FABA) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH 3- REMARK 900 (PENTYLTHIO)-4H-1,2,4-TRIAZOLE REMARK 900 RELATED ID: 4B0I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-HYDROXYDECANOYL-ACYL CARRIER PROTEIN REMARK 900 DEHYDRATASE (FABA) MUTANT (H70N) FROM PSEUDOMONAS AERUGINOSA IN REMARK 900 COMPLEX WITH 3-HYDROXYDECANOYL-N-ACETYL CYSTEAMINE REMARK 900 RELATED ID: 4B0J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-HYDROXYDECANOYL-ACYL CARRIER PROTEIN REMARK 900 DEHYDRATASE (FABA) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH 5-(2- REMARK 900 THIENYL)-3-ISOXAZOLYL METHANOL REMARK 900 RELATED ID: 4FQ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-HYDROXYDECANOYL-ACYL CARRIER PROTEIN REMARK 900 DEHYDRATASE (FABA) FROM PSEUDOMONAS AERUGINOSA DBREF 4B8U A 1 171 UNP O33877 FABA_PSEAE 1 171 DBREF 4B8U B 1 171 UNP O33877 FABA_PSEAE 1 171 DBREF 4B8U C 1 171 UNP O33877 FABA_PSEAE 1 171 DBREF 4B8U D 1 171 UNP O33877 FABA_PSEAE 1 171 DBREF 4B8U E 1 171 UNP O33877 FABA_PSEAE 1 171 SEQRES 1 A 171 MET THR LYS GLN HIS ALA PHE THR ARG GLU ASP LEU LEU SEQRES 2 A 171 ARG CYS SER ARG GLY GLU LEU PHE GLY PRO GLY ASN ALA SEQRES 3 A 171 GLN LEU PRO ALA PRO ASN MET LEU MET ILE ASP ARG ILE SEQRES 4 A 171 VAL HIS ILE SER ASP VAL GLY GLY LYS TYR GLY LYS GLY SEQRES 5 A 171 GLU LEU VAL ALA GLU LEU ASP ILE ASN PRO ASP LEU TRP SEQRES 6 A 171 PHE PHE ALA CYS HIS PHE GLU GLY ASP PRO VAL MET PRO SEQRES 7 A 171 GLY CYS LEU GLY LEU ASP ALA MET TRP GLN LEU VAL GLY SEQRES 8 A 171 PHE TYR LEU GLY TRP GLN GLY ASN PRO GLY ARG GLY ARG SEQRES 9 A 171 ALA LEU GLY SER GLY GLU VAL LYS PHE PHE GLY GLN VAL SEQRES 10 A 171 LEU PRO THR ALA LYS LYS VAL THR TYR ASN ILE HIS ILE SEQRES 11 A 171 LYS ARG THR ILE ASN ARG SER LEU VAL LEU ALA ILE ALA SEQRES 12 A 171 ASP GLY THR VAL SER VAL ASP GLY ARG GLU ILE TYR SER SEQRES 13 A 171 ALA GLU GLY LEU ARG VAL GLY LEU PHE THR SER THR ASP SEQRES 14 A 171 SER PHE SEQRES 1 B 171 MET THR LYS GLN HIS ALA PHE THR ARG GLU ASP LEU LEU SEQRES 2 B 171 ARG CYS SER ARG GLY GLU LEU PHE GLY PRO GLY ASN ALA SEQRES 3 B 171 GLN LEU PRO ALA PRO ASN MET LEU MET ILE ASP ARG ILE SEQRES 4 B 171 VAL HIS ILE SER ASP VAL GLY GLY LYS TYR GLY LYS GLY SEQRES 5 B 171 GLU LEU VAL ALA GLU LEU ASP ILE ASN PRO ASP LEU TRP SEQRES 6 B 171 PHE PHE ALA CYS HIS PHE GLU GLY ASP PRO VAL MET PRO SEQRES 7 B 171 GLY CYS LEU GLY LEU ASP ALA MET TRP GLN LEU VAL GLY SEQRES 8 B 171 PHE TYR LEU GLY TRP GLN GLY ASN PRO GLY ARG GLY ARG SEQRES 9 B 171 ALA LEU GLY SER GLY GLU VAL LYS PHE PHE GLY GLN VAL SEQRES 10 B 171 LEU PRO THR ALA LYS LYS VAL THR TYR ASN ILE HIS ILE SEQRES 11 B 171 LYS ARG THR ILE ASN ARG SER LEU VAL LEU ALA ILE ALA SEQRES 12 B 171 ASP GLY THR VAL SER VAL ASP GLY ARG GLU ILE TYR SER SEQRES 13 B 171 ALA GLU GLY LEU ARG VAL GLY LEU PHE THR SER THR ASP SEQRES 14 B 171 SER PHE SEQRES 1 C 171 MET THR LYS GLN HIS ALA PHE THR ARG GLU ASP LEU LEU SEQRES 2 C 171 ARG CYS SER ARG GLY GLU LEU PHE GLY PRO GLY ASN ALA SEQRES 3 C 171 GLN LEU PRO ALA PRO ASN MET LEU MET ILE ASP ARG ILE SEQRES 4 C 171 VAL HIS ILE SER ASP VAL GLY GLY LYS TYR GLY LYS GLY SEQRES 5 C 171 GLU LEU VAL ALA GLU LEU ASP ILE ASN PRO ASP LEU TRP SEQRES 6 C 171 PHE PHE ALA CYS HIS PHE GLU GLY ASP PRO VAL MET PRO SEQRES 7 C 171 GLY CYS LEU GLY LEU ASP ALA MET TRP GLN LEU VAL GLY SEQRES 8 C 171 PHE TYR LEU GLY TRP GLN GLY ASN PRO GLY ARG GLY ARG SEQRES 9 C 171 ALA LEU GLY SER GLY GLU VAL LYS PHE PHE GLY GLN VAL SEQRES 10 C 171 LEU PRO THR ALA LYS LYS VAL THR TYR ASN ILE HIS ILE SEQRES 11 C 171 LYS ARG THR ILE ASN ARG SER LEU VAL LEU ALA ILE ALA SEQRES 12 C 171 ASP GLY THR VAL SER VAL ASP GLY ARG GLU ILE TYR SER SEQRES 13 C 171 ALA GLU GLY LEU ARG VAL GLY LEU PHE THR SER THR ASP SEQRES 14 C 171 SER PHE SEQRES 1 D 171 MET THR LYS GLN HIS ALA PHE THR ARG GLU ASP LEU LEU SEQRES 2 D 171 ARG CYS SER ARG GLY GLU LEU PHE GLY PRO GLY ASN ALA SEQRES 3 D 171 GLN LEU PRO ALA PRO ASN MET LEU MET ILE ASP ARG ILE SEQRES 4 D 171 VAL HIS ILE SER ASP VAL GLY GLY LYS TYR GLY LYS GLY SEQRES 5 D 171 GLU LEU VAL ALA GLU LEU ASP ILE ASN PRO ASP LEU TRP SEQRES 6 D 171 PHE PHE ALA CYS HIS PHE GLU GLY ASP PRO VAL MET PRO SEQRES 7 D 171 GLY CYS LEU GLY LEU ASP ALA MET TRP GLN LEU VAL GLY SEQRES 8 D 171 PHE TYR LEU GLY TRP GLN GLY ASN PRO GLY ARG GLY ARG SEQRES 9 D 171 ALA LEU GLY SER GLY GLU VAL LYS PHE PHE GLY GLN VAL SEQRES 10 D 171 LEU PRO THR ALA LYS LYS VAL THR TYR ASN ILE HIS ILE SEQRES 11 D 171 LYS ARG THR ILE ASN ARG SER LEU VAL LEU ALA ILE ALA SEQRES 12 D 171 ASP GLY THR VAL SER VAL ASP GLY ARG GLU ILE TYR SER SEQRES 13 D 171 ALA GLU GLY LEU ARG VAL GLY LEU PHE THR SER THR ASP SEQRES 14 D 171 SER PHE SEQRES 1 E 171 MET THR LYS GLN HIS ALA PHE THR ARG GLU ASP LEU LEU SEQRES 2 E 171 ARG CYS SER ARG GLY GLU LEU PHE GLY PRO GLY ASN ALA SEQRES 3 E 171 GLN LEU PRO ALA PRO ASN MET LEU MET ILE ASP ARG ILE SEQRES 4 E 171 VAL HIS ILE SER ASP VAL GLY GLY LYS TYR GLY LYS GLY SEQRES 5 E 171 GLU LEU VAL ALA GLU LEU ASP ILE ASN PRO ASP LEU TRP SEQRES 6 E 171 PHE PHE ALA CYS HIS PHE GLU GLY ASP PRO VAL MET PRO SEQRES 7 E 171 GLY CYS LEU GLY LEU ASP ALA MET TRP GLN LEU VAL GLY SEQRES 8 E 171 PHE TYR LEU GLY TRP GLN GLY ASN PRO GLY ARG GLY ARG SEQRES 9 E 171 ALA LEU GLY SER GLY GLU VAL LYS PHE PHE GLY GLN VAL SEQRES 10 E 171 LEU PRO THR ALA LYS LYS VAL THR TYR ASN ILE HIS ILE SEQRES 11 E 171 LYS ARG THR ILE ASN ARG SER LEU VAL LEU ALA ILE ALA SEQRES 12 E 171 ASP GLY THR VAL SER VAL ASP GLY ARG GLU ILE TYR SER SEQRES 13 E 171 ALA GLU GLY LEU ARG VAL GLY LEU PHE THR SER THR ASP SEQRES 14 E 171 SER PHE HET IBK B 501 20 HET SO4 C1167 5 HETNAM IBK N-ISOBUTYL-2-{[5-(THIOPHEN-2-YL)-1,2-OXAZOL-3- HETNAM 2 IBK YL]METHOXY}ACETAMIDE HETNAM SO4 SULFATE ION FORMUL 6 IBK C14 H18 N2 O3 S FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *25(H2 O) HELIX 1 1 THR A 8 ARG A 17 1 10 HELIX 2 2 LEU A 64 HIS A 70 1 7 HELIX 3 3 PRO A 78 GLN A 97 1 20 HELIX 4 4 THR B 8 ARG B 17 1 10 HELIX 5 5 LEU B 64 HIS B 70 1 7 HELIX 6 6 PRO B 78 GLN B 97 1 20 HELIX 7 7 THR C 8 ARG C 17 1 10 HELIX 8 8 LEU C 64 HIS C 70 1 7 HELIX 9 9 PRO C 78 GLN C 97 1 20 HELIX 10 10 THR D 8 ARG D 17 1 10 HELIX 11 11 LEU D 64 HIS D 70 1 7 HELIX 12 12 PRO D 78 GLN D 97 1 20 HELIX 13 13 THR E 8 ARG E 17 1 10 HELIX 14 14 LEU E 64 HIS E 70 1 7 HELIX 15 15 PRO E 78 GLN E 97 1 20 SHEET 1 AA 8 ARG A 38 SER A 43 0 SHEET 2 AA 8 GLU A 53 ASP A 59 -1 O GLU A 53 N SER A 43 SHEET 3 AA 8 LYS A 123 ILE A 134 -1 O VAL A 124 N LEU A 58 SHEET 4 AA 8 VAL A 139 VAL A 149 -1 O LEU A 140 N ILE A 134 SHEET 5 AA 8 ARG A 152 PHE A 165 -1 O ARG A 152 N VAL A 149 SHEET 6 AA 8 ARG A 102 SER A 108 -1 O ARG A 102 N PHE A 165 SHEET 7 AA 8 VAL B 111 PHE B 113 -1 O VAL B 111 N SER A 108 SHEET 8 AA 8 ARG B 152 PHE B 165 -1 O SER B 156 N LYS B 112 SHEET 1 AB 2 ARG A 38 SER A 43 0 SHEET 2 AB 2 ARG B 152 PHE B 165 1 O ARG B 161 N LEU B 106 SHEET 1 CA 8 ARG C 38 SER C 43 0 SHEET 2 CA 8 GLU C 53 ASP C 59 -1 O GLU C 53 N SER C 43 SHEET 3 CA 8 LYS C 123 ILE C 134 -1 O VAL C 124 N LEU C 58 SHEET 4 CA 8 VAL C 139 VAL C 149 -1 O LEU C 140 N ILE C 134 SHEET 5 CA 8 ARG C 152 PHE C 165 -1 O ARG C 152 N VAL C 149 SHEET 6 CA 8 ARG C 102 SER C 108 -1 O ARG C 102 N PHE C 165 SHEET 7 CA 8 VAL D 111 PHE D 113 -1 O VAL D 111 N SER C 108 SHEET 8 CA 8 ARG D 152 PHE D 165 -1 O SER D 156 N LYS D 112 SHEET 1 CB 2 ARG C 38 SER C 43 0 SHEET 2 CB 2 ARG D 152 PHE D 165 1 O ARG D 161 N LEU D 106 SHEET 1 EA 6 ARG E 38 SER E 43 0 SHEET 2 EA 6 GLU E 53 ASP E 59 -1 O GLU E 53 N SER E 43 SHEET 3 EA 6 LYS E 123 ILE E 134 -1 O VAL E 124 N LEU E 58 SHEET 4 EA 6 VAL E 139 VAL E 149 -1 O LEU E 140 N ILE E 134 SHEET 5 EA 6 ARG E 152 PHE E 165 -1 O ARG E 152 N VAL E 149 SHEET 6 EA 6 ARG E 102 GLY E 107 -1 O ARG E 102 N PHE E 165 SHEET 1 EB 2 ARG E 38 SER E 43 0 SHEET 2 EB 2 VAL E 111 PHE E 113 -1 O LYS E 112 N SER E 156 CISPEP 1 PRO A 31 ASN A 32 0 7.15 CISPEP 2 HIS A 70 PHE A 71 0 -8.26 CISPEP 3 PRO B 31 ASN B 32 0 7.87 CISPEP 4 HIS B 70 PHE B 71 0 -8.31 CISPEP 5 PRO C 31 ASN C 32 0 7.97 CISPEP 6 HIS C 70 PHE C 71 0 -6.43 CISPEP 7 PRO D 31 ASN D 32 0 9.85 CISPEP 8 HIS D 70 PHE D 71 0 -4.76 CISPEP 9 PRO E 31 ASN E 32 0 7.10 CISPEP 10 HIS E 70 PHE E 71 0 -4.53 SITE 1 AC1 11 ALA A 105 LEU A 106 PHE A 171 GLY B 79 SITE 2 AC1 11 LYS B 112 PHE B 113 GLY B 115 GLN B 116 SITE 3 AC1 11 LYS E 48 TYR E 49 GLY E 50 SITE 1 AC2 8 GLU C 72 GLY C 73 PRO D 23 GLY D 24 SITE 2 AC2 8 GLN D 27 ALA E 6 THR E 8 ASP E 11 CRYST1 113.900 143.670 78.000 90.00 116.51 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008780 0.000000 0.004379 0.00000 SCALE2 0.000000 0.006960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014327 0.00000