HEADER EXOCYTOSIS 31-AUG-12 4B93 TITLE COMPLEX OF VAMP7 CYTOPLASMIC DOMAIN WITH 2ND ANKYRIN REPEAT DOMAIN OF TITLE 2 VARP COMPND MOL_ID: 1; COMPND 2 MOLECULE: VESICLE-ASSOCIATED MEMBRANE PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTOPLASMIC DOMAIN, RESIDUES 1-188; COMPND 5 SYNONYM: VAMP-7, SYNAPTOBREVIN-LIKE PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: 2ND ANKYRIN REPEAT DOMAIN, RESIDUES 659-921; COMPND 11 SYNONYM: VARP, VPS9 DOMAIN-CONTAINING PROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: VAMP7; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 PLYSS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: VARP658-921 KEYWDS ENDOCYTOSIS, EXOCYTOSIS, SNARE EXPDTA X-RAY DIFFRACTION AUTHOR I.B.SCHAEFER,D.J.OWEN,J.P.LUZIO,P.R.EVANS REVDAT 6 08-MAY-24 4B93 1 REMARK REVDAT 5 08-MAY-19 4B93 1 REMARK REVDAT 4 03-APR-19 4B93 1 REMARK REVDAT 3 25-JAN-17 4B93 1 REMARK REVDAT 2 19-DEC-12 4B93 1 JRNL REVDAT 1 31-OCT-12 4B93 0 JRNL AUTH I.B.SCHAFER,G.G.HESKETH,N.A.BRIGHT,S.R.GRAY,P.R.PRYOR, JRNL AUTH 2 P.R.EVANS,J.P.LUZIO,D.J.OWEN JRNL TITL THE BINDING OF VARP TO VAMP7 TRAPS VAMP7 IN A CLOSED, JRNL TITL 2 FUSOGENICALLY INACTIVE CONFORMATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 1300 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 23104059 JRNL DOI 10.1038/NSMB.2414 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0018 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 43692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3910 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2707 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.83000 REMARK 3 B22 (A**2) : 1.07000 REMARK 3 B33 (A**2) : -3.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.895 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2758 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2695 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3728 ; 1.837 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6169 ; 0.876 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 346 ; 6.884 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;33.262 ;24.580 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;15.701 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.785 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 431 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3151 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 646 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2758 ; 4.283 ; 4.877 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2695 ; 1.236 ; 4.980 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3727 ; 6.189 ; 7.223 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4B93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1290053930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 56.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 100.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.96000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 TO 7.5 % (V/V) ISOPROPANOL AND 0.1 M REMARK 280 IMIDAZOLE PH 6.5-7.8 IN HANGING AND SITTING DROPS AT 4 DEGREES, REMARK 280 PH 7, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.78500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.33000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.78500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.33000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.30000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.78500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.33000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.30000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.78500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.33000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 121 REMARK 465 SER A 122 REMARK 465 LEU A 123 REMARK 465 ASP A 124 REMARK 465 LYS A 125 REMARK 465 VAL A 126 REMARK 465 MET A 127 REMARK 465 LEU A 164 REMARK 465 VAL A 165 REMARK 465 ASP A 166 REMARK 465 SER A 167 REMARK 465 SER A 168 REMARK 465 VAL A 169 REMARK 465 THR A 170 REMARK 465 PHE A 171 REMARK 465 LYS A 172 REMARK 465 THR A 173 REMARK 465 THR A 174 REMARK 465 SER A 175 REMARK 465 ARG A 176 REMARK 465 ASN A 177 REMARK 465 LEU A 178 REMARK 465 ALA A 179 REMARK 465 ARG A 180 REMARK 465 ALA A 181 REMARK 465 MET A 182 REMARK 465 CYS A 183 REMARK 465 MET A 184 REMARK 465 LYS A 185 REMARK 465 ASN A 186 REMARK 465 ILE A 187 REMARK 465 LYS A 188 REMARK 465 ARG B 659 REMARK 465 GLN B 660 REMARK 465 GLU B 661 REMARK 465 GLU B 662 REMARK 465 THR B 663 REMARK 465 LYS B 664 REMARK 465 GLU B 693 REMARK 465 GLU B 694 REMARK 465 ASP B 695 REMARK 465 LEU B 696 REMARK 465 GLU B 697 REMARK 465 ASP B 698 REMARK 465 ALA B 699 REMARK 465 GLU B 700 REMARK 465 ASP B 701 REMARK 465 THR B 702 REMARK 465 VAL B 703 REMARK 465 SER B 704 REMARK 465 ALA B 705 REMARK 465 ALA B 706 REMARK 465 ASP B 707 REMARK 465 PRO B 708 REMARK 465 GLU B 709 REMARK 465 PHE B 710 REMARK 465 CYS B 711 REMARK 465 HIS B 712 REMARK 465 PRO B 713 REMARK 465 LEU B 714 REMARK 465 CYS B 715 REMARK 465 GLN B 716 REMARK 465 CYS B 717 REMARK 465 PRO B 718 REMARK 465 LYS B 719 REMARK 465 CYS B 720 REMARK 465 ALA B 721 REMARK 465 PRO B 722 REMARK 465 ALA B 723 REMARK 465 GLN B 724 REMARK 465 LYS B 725 REMARK 465 ARG B 726 REMARK 465 LEU B 727 REMARK 465 ALA B 728 REMARK 465 LYS B 729 REMARK 465 VAL B 730 REMARK 465 PRO B 731 REMARK 465 ALA B 732 REMARK 465 VAL B 896 REMARK 465 PRO B 897 REMARK 465 SER B 898 REMARK 465 CYS B 899 REMARK 465 VAL B 900 REMARK 465 ALA B 901 REMARK 465 SER B 902 REMARK 465 LEU B 903 REMARK 465 ASP B 904 REMARK 465 ASP B 905 REMARK 465 VAL B 906 REMARK 465 ALA B 907 REMARK 465 GLU B 908 REMARK 465 THR B 909 REMARK 465 ASP B 910 REMARK 465 ARG B 911 REMARK 465 LYS B 912 REMARK 465 GLU B 913 REMARK 465 TYR B 914 REMARK 465 VAL B 915 REMARK 465 THR B 916 REMARK 465 VAL B 917 REMARK 465 LYS B 918 REMARK 465 ILE B 919 REMARK 465 ARG B 920 REMARK 465 LYS B 921 REMARK 465 HIS B 922 REMARK 465 HIS B 923 REMARK 465 HIS B 924 REMARK 465 HIS B 925 REMARK 465 HIS B 926 REMARK 465 HIS B 927 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 743 CB - CA - C ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 59 -5.52 72.54 REMARK 500 TYR A 100 14.16 57.13 REMARK 500 SER B 741 -167.19 -68.46 REMARK 500 ASP B 743 -31.26 -26.29 REMARK 500 ASP B 881 31.00 -78.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VX8 RELATED DB: PDB REMARK 900 VAMP7 LONGIN DOMAIN HRB PEPTIDE COMPLEX REMARK 900 RELATED ID: 4AFI RELATED DB: PDB REMARK 900 COMPLEX BETWEEN VAMP7 LONGIN DOMAIN AND FRAGMENT OF DELTA-ADAPTIN REMARK 900 FROM AP3 DBREF 4B93 A 0 187 UNP P70280 VAMP7_MOUSE 1 188 DBREF 4B93 B 659 921 UNP Q96NW4 ANR27_HUMAN 659 921 SEQADV 4B93 SER A 0 UNP P70280 EXPRESSION TAG SEQADV 4B93 HIS B 922 UNP Q96NW4 EXPRESSION TAG SEQADV 4B93 HIS B 923 UNP Q96NW4 EXPRESSION TAG SEQADV 4B93 HIS B 924 UNP Q96NW4 EXPRESSION TAG SEQADV 4B93 HIS B 925 UNP Q96NW4 EXPRESSION TAG SEQADV 4B93 HIS B 926 UNP Q96NW4 EXPRESSION TAG SEQADV 4B93 HIS B 927 UNP Q96NW4 EXPRESSION TAG SEQRES 1 A 189 SER MET ALA ILE LEU PHE ALA VAL VAL ALA ARG GLY THR SEQRES 2 A 189 THR ILE LEU ALA LYS HIS ALA TRP CYS GLY GLY ASN PHE SEQRES 3 A 189 LEU GLU VAL THR GLU GLN ILE LEU ALA LYS ILE PRO SER SEQRES 4 A 189 GLU ASN ASN LYS LEU THR TYR SER HIS GLY ASN TYR LEU SEQRES 5 A 189 PHE HIS TYR ILE CYS GLN ASP ARG ILE VAL TYR LEU CYS SEQRES 6 A 189 ILE THR ASP ASP ASP PHE GLU ARG SER ARG ALA PHE SER SEQRES 7 A 189 PHE LEU ASN GLU VAL LYS LYS ARG PHE GLN THR THR TYR SEQRES 8 A 189 GLY SER ARG ALA GLN THR ALA LEU PRO TYR ALA MET ASN SEQRES 9 A 189 SER GLU PHE SER SER VAL LEU ALA ALA GLN LEU LYS HIS SEQRES 10 A 189 HIS SER GLU ASN LYS SER LEU ASP LYS VAL MET GLU THR SEQRES 11 A 189 GLN ALA GLN VAL ASP GLU LEU LYS GLY ILE MET VAL ARG SEQRES 12 A 189 ASN ILE ASP LEU VAL ALA GLN ARG GLY GLU ARG LEU GLU SEQRES 13 A 189 LEU LEU ILE ASP LYS THR GLU ASN LEU VAL ASP SER SER SEQRES 14 A 189 VAL THR PHE LYS THR THR SER ARG ASN LEU ALA ARG ALA SEQRES 15 A 189 MET CYS MET LYS ASN ILE LYS SEQRES 1 B 269 ARG GLN GLU GLU THR LYS LYS ASP TYR ARG GLU VAL GLU SEQRES 2 B 269 LYS LEU LEU ARG ALA VAL ALA ASP GLY ASP LEU GLU MET SEQRES 3 B 269 VAL ARG TYR LEU LEU GLU TRP THR GLU GLU ASP LEU GLU SEQRES 4 B 269 ASP ALA GLU ASP THR VAL SER ALA ALA ASP PRO GLU PHE SEQRES 5 B 269 CYS HIS PRO LEU CYS GLN CYS PRO LYS CYS ALA PRO ALA SEQRES 6 B 269 GLN LYS ARG LEU ALA LYS VAL PRO ALA SER GLY LEU GLY SEQRES 7 B 269 VAL ASN VAL THR SER GLN ASP GLY SER SER PRO LEU HIS SEQRES 8 B 269 VAL ALA ALA LEU HIS GLY ARG ALA ASP LEU ILE PRO LEU SEQRES 9 B 269 LEU LEU LYS HIS GLY ALA ASN ALA GLY ALA ARG ASN ALA SEQRES 10 B 269 ASP GLN ALA VAL PRO LEU HIS LEU ALA CYS GLN GLN GLY SEQRES 11 B 269 HIS PHE GLN VAL VAL LYS CYS LEU LEU ASP SER ASN ALA SEQRES 12 B 269 LYS PRO ASN LYS LYS ASP LEU SER GLY ASN THR PRO LEU SEQRES 13 B 269 ILE TYR ALA CYS SER GLY GLY HIS HIS GLU LEU VAL ALA SEQRES 14 B 269 LEU LEU LEU GLN HIS GLY ALA SER ILE ASN ALA SER ASN SEQRES 15 B 269 ASN LYS GLY ASN THR ALA LEU HIS GLU ALA VAL ILE GLU SEQRES 16 B 269 LYS HIS VAL PHE VAL VAL GLU LEU LEU LEU LEU HIS GLY SEQRES 17 B 269 ALA SER VAL GLN VAL LEU ASN LYS ARG GLN ARG THR ALA SEQRES 18 B 269 VAL ASP CYS ALA GLU GLN ASN SER LYS ILE MET GLU LEU SEQRES 19 B 269 LEU GLN VAL VAL PRO SER CYS VAL ALA SER LEU ASP ASP SEQRES 20 B 269 VAL ALA GLU THR ASP ARG LYS GLU TYR VAL THR VAL LYS SEQRES 21 B 269 ILE ARG LYS HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *209(H2 O) HELIX 1 1 ASN A 24 ALA A 34 1 11 HELIX 2 2 GLU A 71 GLY A 91 1 21 HELIX 3 3 SER A 92 THR A 96 5 5 HELIX 4 4 MET A 102 GLU A 119 1 18 HELIX 5 5 THR A 129 GLU A 135 1 7 HELIX 6 6 TYR B 667 ASP B 679 1 13 HELIX 7 7 ASP B 681 GLU B 690 1 10 HELIX 8 8 SER B 746 HIS B 754 1 9 HELIX 9 9 ASP B 758 HIS B 766 1 9 HELIX 10 10 VAL B 779 GLY B 788 1 10 HELIX 11 11 HIS B 789 SER B 799 1 11 HELIX 12 12 THR B 812 GLY B 820 1 9 HELIX 13 13 HIS B 822 GLU B 824 5 3 HELIX 14 14 LEU B 825 HIS B 832 1 8 HELIX 15 15 THR B 845 GLU B 853 1 9 HELIX 16 16 HIS B 855 HIS B 865 1 11 HELIX 17 17 ALA B 879 ALA B 883 5 5 HELIX 18 18 SER B 887 LEU B 893 1 7 SHEET 1 AA 6 THR A 13 ALA A 19 0 SHEET 2 AA 6 ILE A 3 ARG A 10 -1 O ALA A 6 N HIS A 18 SHEET 3 AA 6 ILE A 60 ASP A 67 -1 O VAL A 61 N ALA A 9 SHEET 4 AA 6 TYR A 50 GLN A 57 -1 O LEU A 51 N THR A 66 SHEET 5 AA 6 ASN A 41 HIS A 47 -1 O ASN A 41 N CYS A 56 SHEET 6 AA 6 VAL A 141 ARG A 142 1 O ARG A 142 N SER A 46 SHEET 1 AB 2 GLY A 22 GLY A 23 0 SHEET 2 AB 2 ILE A 158 ASP A 159 -1 N ASP A 159 O GLY A 22 CRYST1 69.570 122.660 158.600 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014374 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006305 0.00000