HEADER SUGAR BINDING PROTEIN 02-SEP-12 4B96 TITLE FAMILY 3B CARBOHYDRATE-BINDING MODULE FROM THE BIOMASS TITLE 2 SENSORING SYSTEM OF CLOSTRIDIUM CLARIFLAVUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSE BINDING DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 333-480; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM CLARIFLAVUM; SOURCE 3 ORGANISM_TAXID: 288965; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) 19732 KEYWDS SUGAR BINDING PROTEIN, CARBOHYDRATE BINDING PROTEIN SYSTEM, CELLULOSE EXPDTA X-RAY DIFFRACTION AUTHOR O.YANIV,Y.H.K.REDDY,H.YOFFE,L.J.W.SHIMON,E.A.BAYER,R.LAMED,F.FROLOW REVDAT 1 18-SEP-13 4B96 0 JRNL AUTH O.YANIV,Y.H.K.REDDY,E.A.BAYER,R.LAMED,F.FROLOW JRNL TITL STRUCTURE OF CBM3B FROM THE BIOMASS SENSORING SYSTEM OF JRNL TITL 2 CLOSTRIDIUM CLARIFALVUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.911 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.278 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.36 REMARK 3 COMPLETENESS FOR RANGE (%) : 47.92 REMARK 3 NUMBER OF REFLECTIONS : 20626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1546 REMARK 3 R VALUE (WORKING SET) : 0.1528 REMARK 3 FREE R VALUE : 0.1889 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2948 - 3.8224 0.57 2936 129 0.1422 0.1510 REMARK 3 2 3.8224 - 3.0341 0.54 2755 155 0.1328 0.1785 REMARK 3 3 3.0341 - 2.6506 0.54 2726 166 0.1585 0.2223 REMARK 3 4 2.6506 - 2.4083 0.53 2718 124 0.1644 0.2187 REMARK 3 5 2.4083 - 2.2356 0.51 2613 162 0.1738 0.1951 REMARK 3 6 2.2356 - 2.1038 0.49 2496 139 0.1698 0.2145 REMARK 3 7 2.1038 - 1.9985 0.42 2142 106 0.1831 0.2209 REMARK 3 8 1.9985 - 1.9115 0.23 1189 70 0.1990 0.2250 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.69 REMARK 3 B_SOL : 378 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.13 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.277 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1361 REMARK 3 ANGLE : 1.667 1851 REMARK 3 CHIRALITY : 0.149 183 REMARK 3 PLANARITY : 0.008 239 REMARK 3 DIHEDRAL : 13.853 489 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.0019 53.9790 5.2808 REMARK 3 T TENSOR REMARK 3 T11: 0.1625 T22: 0.2430 REMARK 3 T33: 0.1974 T12: -0.0238 REMARK 3 T13: -0.0041 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 3.5243 L22: 4.7663 REMARK 3 L33: 2.2954 L12: -3.4652 REMARK 3 L13: 0.3881 L23: -0.1877 REMARK 3 S TENSOR REMARK 3 S11: -0.2103 S12: -0.2462 S13: -0.7549 REMARK 3 S21: 0.0650 S22: 0.1168 S23: 0.4694 REMARK 3 S31: -0.0293 S32: -0.5353 S33: 0.0445 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 10 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 88.8460 49.6955 8.3476 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.2351 REMARK 3 T33: 0.2653 T12: 0.0291 REMARK 3 T13: -0.0160 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 9.4573 L22: 6.1856 REMARK 3 L33: 7.2309 L12: 1.6649 REMARK 3 L13: 2.2944 L23: -1.1058 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: -0.1824 S13: -0.9089 REMARK 3 S21: 0.0212 S22: 0.1313 S23: -0.5347 REMARK 3 S31: 0.2172 S32: 0.0040 S33: -0.0762 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 20 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 77.5756 58.5048 -0.0595 REMARK 3 T TENSOR REMARK 3 T11: 0.1424 T22: 0.1225 REMARK 3 T33: 0.1175 T12: -0.0010 REMARK 3 T13: -0.0059 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.7124 L22: 1.7430 REMARK 3 L33: 1.8137 L12: 0.1584 REMARK 3 L13: 0.1293 L23: 0.1654 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: 0.2320 S13: 0.0580 REMARK 3 S21: -0.2120 S22: 0.0478 S23: 0.0576 REMARK 3 S31: -0.0746 S32: -0.0324 S33: 0.0118 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 65 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 81.9304 64.3831 -4.0539 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.2300 REMARK 3 T33: 0.1747 T12: 0.0345 REMARK 3 T13: 0.0374 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 2.9176 L22: 0.9428 REMARK 3 L33: 4.7743 L12: 0.1378 REMARK 3 L13: -0.4361 L23: -2.0356 REMARK 3 S TENSOR REMARK 3 S11: -0.0490 S12: 0.4889 S13: 0.1783 REMARK 3 S21: -0.8130 S22: 0.2442 S23: -0.2350 REMARK 3 S31: -0.7952 S32: 0.4590 S33: -0.2576 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 76 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 78.9790 61.6249 2.3274 REMARK 3 T TENSOR REMARK 3 T11: 0.1529 T22: 0.1452 REMARK 3 T33: 0.1405 T12: -0.0206 REMARK 3 T13: 0.0111 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.0829 L22: 2.4548 REMARK 3 L33: 1.9728 L12: 0.5009 REMARK 3 L13: 0.5718 L23: -0.1442 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: 0.0773 S13: 0.2563 REMARK 3 S21: -0.1189 S22: 0.0075 S23: 0.0358 REMARK 3 S31: -0.1682 S32: -0.0775 S33: 0.0878 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 110 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 96.6654 58.8393 5.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.1934 T22: 0.2761 REMARK 3 T33: 0.2750 T12: -0.0616 REMARK 3 T13: -0.0075 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 3.4761 L22: 9.2247 REMARK 3 L33: 5.4396 L12: 4.6617 REMARK 3 L13: -4.0592 L23: -6.7913 REMARK 3 S TENSOR REMARK 3 S11: -0.1918 S12: 0.1842 S13: -0.0812 REMARK 3 S21: -0.5359 S22: 0.3475 S23: -0.2628 REMARK 3 S31: 0.5376 S32: -0.1568 S33: 0.0617 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 117 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.5631 56.4408 10.7585 REMARK 3 T TENSOR REMARK 3 T11: 0.0952 T22: 0.1129 REMARK 3 T33: 0.0958 T12: -0.0354 REMARK 3 T13: 0.0107 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 3.5808 L22: 1.7383 REMARK 3 L33: 3.3263 L12: -0.3345 REMARK 3 L13: 0.3845 L23: 0.2987 REMARK 3 S TENSOR REMARK 3 S11: 0.0345 S12: -0.1620 S13: 0.0091 REMARK 3 S21: 0.0485 S22: -0.0314 S23: -0.0740 REMARK 3 S31: 0.1525 S32: 0.0421 S33: 0.0035 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-12. REMARK 100 THE PDBE ID CODE IS EBI-53939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED REMARK 200 CHANNEL-CUT SILICON REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23184 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.91 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.68 REMARK 200 R MERGE (I) : 0.12 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.6 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CLOSTRIDIUM THERMOCELLUM 0404 CBM3B REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.7 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M NACL, 0.1 M NA ACETATE PH REMARK 280 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.21533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.10767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.16150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.05383 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.26917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.21533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 18.10767 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 9.05383 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 27.16150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.26917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 135.21200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.16150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2068 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER A 1 O B HOH A 2002 2.02 REMARK 500 O HOH A 2020 O A HOH A 2051 2.08 REMARK 500 O B HOH A 2051 O B HOH A 2053 1.89 REMARK 500 O B HOH A 2068 O HOH A 2158 1.95 REMARK 500 O HOH A 2089 O HOH A 2090 2.19 REMARK 500 O HOH A 2159 O HOH A 2160 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O A HOH A 2002 O HOH A 2168 11655 2.13 REMARK 500 O B HOH A 2068 O HOH A 2158 11655 1.95 REMARK 500 O HOH A 2073 O HOH A 2073 11655 0.86 REMARK 500 O HOH A 2156 O HOH A 2158 11655 2.13 REMARK 500 O HOH A 2159 O HOH A 2159 11655 1.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 78 94.77 -68.98 REMARK 500 SER A 79 122.48 92.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER A 79 24.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1155 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 ASN A 116 O 102.0 REMARK 620 3 HOH A2076 O 144.5 82.2 REMARK 620 4 HOH A2077 O 138.6 97.9 73.9 REMARK 620 5 HOH A2078 O 71.7 90.4 73.0 144.3 REMARK 620 6 ASP A 119 OD1 78.4 80.6 136.6 69.5 146.2 REMARK 620 7 LYS A 47 O 87.3 169.4 87.3 77.9 87.7 106.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1155 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B97 RELATED DB: PDB REMARK 900 BIOMASS SENSING MODULES FROM PUTATIVE RSGI-LIKE PROTEINS REMARK 900 OF CLOSTRIDIUM THERMOCELLUM RESEMBLE FAMILY 3 CARBOHYDRATE- REMARK 900 BINDING MODULE OF CELLULOSOME DBREF 4B96 A 4 151 UNP G8LST1 G8LST1_CLOCD 333 480 SEQADV 4B96 SER A 1 UNP G8LST1 EXPRESSION TAG SEQADV 4B96 HIS A 2 UNP G8LST1 EXPRESSION TAG SEQADV 4B96 MET A 3 UNP G8LST1 EXPRESSION TAG SEQRES 1 A 151 SER HIS MET ILE LEU LYS LEU LYS HIS TYR ASN GLU GLN SEQRES 2 A 151 GLN SER LEU TYR SER LYS ALA ILE ARG TRP ASP PHE VAL SEQRES 3 A 151 ILE GLU ASN THR GLY ASN SER TYR ILE ASP LEU ARG ASN SEQRES 4 A 151 VAL LYS VAL ARG TYR TYR PHE LYS ASP ASP TYR LYS ASN SEQRES 5 A 151 ILE ASN PHE ALA VAL TYR PHE TYR SER LEU GLY ASP GLU SEQRES 6 A 151 LYS ASN ASP VAL LYS GLY LYS VAL TYR ASN ILE ARG GLN SEQRES 7 A 151 SER ASP SER SER HIS LYS TYR LEU GLU VAL THR PHE GLU SEQRES 8 A 151 LYS GLY SER ILE PRO PRO GLY ASP ALA ALA TRP VAL PHE SEQRES 9 A 151 GLY ALA ILE THR ARG ASP ASP TRP THR GLU PHE ASN GLN SEQRES 10 A 151 GLU ASP ASP TRP SER PHE LEU GLN GLY ASN SER THR PHE SEQRES 11 A 151 SER TYR TRP ASP LYS MET THR VAL TYR ILE SER ASP LYS SEQRES 12 A 151 LEU VAL TRP GLY ILE GLU PRO TYR HET CL A1152 1 HET CL A1153 1 HET CL A1154 1 HET CA A1155 1 HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 2 CL 3(CL 1-) FORMUL 3 CA CA 2+ FORMUL 4 HOH *168(H2 O) HELIX 1 1 ASP A 64 ASP A 68 1 5 HELIX 2 2 GLU A 118 ASP A 120 5 3 SHEET 1 AA 2 ALA A 20 ARG A 22 0 SHEET 2 AA 2 ALA A 100 ARG A 109 1 O ILE A 107 N ILE A 21 SHEET 1 AB 2 ILE A 53 TYR A 60 0 SHEET 2 AB 2 ALA A 100 ARG A 109 -1 O PHE A 104 N TYR A 58 SHEET 1 AC 5 SER A 131 TYR A 132 0 SHEET 2 AC 5 LEU A 5 HIS A 9 -1 O HIS A 9 N SER A 131 SHEET 3 AC 5 PHE A 25 ASN A 29 -1 O VAL A 26 N LYS A 8 SHEET 4 AC 5 ALA A 100 ARG A 109 -1 O ALA A 101 N ILE A 27 SHEET 5 AC 5 ILE A 53 TYR A 60 -1 O ASN A 54 N THR A 108 SHEET 1 AD 5 SER A 131 TYR A 132 0 SHEET 2 AD 5 LEU A 5 HIS A 9 -1 O HIS A 9 N SER A 131 SHEET 3 AD 5 PHE A 25 ASN A 29 -1 O VAL A 26 N LYS A 8 SHEET 4 AD 5 ALA A 100 ARG A 109 -1 O ALA A 101 N ILE A 27 SHEET 5 AD 5 ALA A 20 ARG A 22 1 O ILE A 21 N ILE A 107 SHEET 1 AE 2 TYR A 17 SER A 18 0 SHEET 2 AE 2 PHE A 115 ASN A 116 -1 O PHE A 115 N SER A 18 SHEET 1 AF 2 ILE A 35 ASP A 36 0 SHEET 2 AF 2 SER A 94 ILE A 95 -1 O ILE A 95 N ILE A 35 SHEET 1 AG 5 VAL A 69 ASN A 75 0 SHEET 2 AG 5 HIS A 83 PHE A 90 -1 O TYR A 85 N TYR A 74 SHEET 3 AG 5 VAL A 40 LYS A 47 -1 O VAL A 42 N VAL A 88 SHEET 4 AG 5 MET A 136 ILE A 140 -1 O THR A 137 N ARG A 43 SHEET 5 AG 5 LYS A 143 TRP A 146 -1 O LYS A 143 N ILE A 140 LINK CA CA A1155 OD1 ASP A 120 1555 1555 2.46 LINK CA CA A1155 O ASN A 116 1555 1555 2.24 LINK CA CA A1155 O HOH A2076 1555 1555 2.49 LINK CA CA A1155 O HOH A2077 1555 1555 2.60 LINK CA CA A1155 O HOH A2078 1555 1555 2.37 LINK CA CA A1155 OD1 ASP A 119 1555 1555 2.45 LINK CA CA A1155 O LYS A 47 1555 1555 2.25 CISPEP 1 SER A 79 ASP A 80 0 -6.43 SITE 1 AC1 3 HIS A 2 MET A 3 LYS A 135 SITE 1 AC2 2 SER A 131 TYR A 132 SITE 1 AC3 3 LEU A 144 GLU A 149 PRO A 150 SITE 1 AC4 7 LYS A 47 ASN A 116 ASP A 119 ASP A 120 SITE 2 AC4 7 HOH A2076 HOH A2077 HOH A2078 CRYST1 135.212 135.212 54.323 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007396 0.004270 0.000000 0.00000 SCALE2 0.000000 0.008540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018408 0.00000