HEADER ALLERGEN 06-SEP-12 4B9R TITLE CRYSTAL STRUCTURE OF THE MAJOR BIRCH POLLEN ALLERGEN BET V 1.0101 TITLE 2 (ISOFORM A) NITRATED IN VITRO WITH TETRANITROMETHAN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR POLLEN ALLERGEN BET V 1-A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALLERGEN BET V I-A, BET V 1-A; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: NITRATION OF TYR5,66,83 AND 150 TO META-NITRO-TYROSINE COMPND 7 (NIY) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BETULA PENDULA; SOURCE 3 ORGANISM_COMMON: EUROPEAN WHITE BIRCH; SOURCE 4 ORGANISM_TAXID: 3505; SOURCE 5 TISSUE: POLLEN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS ALLERGEN, NITRATION, NITROTYROSINE EXPDTA X-RAY DIFFRACTION AUTHOR S.KOFLER,C.ACKAERT,H.BRANDSTETTER REVDAT 3 20-DEC-23 4B9R 1 REMARK LINK REVDAT 2 27-AUG-14 4B9R 1 JRNL REVDAT 1 16-OCT-13 4B9R 0 JRNL AUTH C.ACKAERT,S.KOFLER,J.HOREJS-HOECK,N.ZULEHNER,C.ASAM, JRNL AUTH 2 S.VON GRAFENSTEIN,J.E.FUCHS,P.BRIZA,K.R.LIEDL,B.BOHLE, JRNL AUTH 3 F.FERREIRA,H.BRANDSTETTER,G.J.OOSTINGH,A.DUSCHL JRNL TITL THE IMPACT OF NITRATION ON THE STRUCTURE AND IMMUNOGENICITY JRNL TITL 2 OF THE MAJOR BIRCH POLLEN ALLERGEN BET V 1.0101. JRNL REF PLOS ONE V. 9 4520 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25126882 JRNL DOI 10.1371/JOURNAL.PONE.0104520 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 11984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 625 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 784 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1230 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.483 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1297 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 876 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1752 ; 1.281 ; 2.029 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2127 ; 0.861 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 158 ; 5.210 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;37.310 ;26.038 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 211 ;13.853 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;21.387 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 192 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1424 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 235 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 353 ; 0.391 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 932 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 608 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 633 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 45 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.245 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.095 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1297 ; 7.695 ; 2.241 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 876 ;83.800 ;73.347 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1750 ;10.104 ; 3.319 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2159 ; 1.596 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 36 ;35.496 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2206 ; 9.321 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. RESIDUES 124-126 REMARK 3 DISORDERED AND THEIR SIDE CHAINS HAVE BEEN DELETED REMARK 4 REMARK 4 4B9R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290053994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12627 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 37.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4A8U REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE 1.5% 2-METHYL-2,4 REMARK 280 -PENTANDIOL, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.57000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 125 CG OD1 OD2 REMARK 470 HIS A 126 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 129 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 4 C NIY A 5 N 0.295 REMARK 500 NIY A 5 C GLU A 6 N 0.188 REMARK 500 ASN A 82 C NIY A 83 N 0.250 REMARK 500 ASN A 82 C NIY A 83 N 0.251 REMARK 500 NIY A 83 C SER A 84 N 0.250 REMARK 500 NIY A 83 C SER A 84 N 0.248 REMARK 500 SER A 149 C NIY A 150 N 0.238 REMARK 500 NIY A 150 C LEU A 151 N -0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 NIY A 66 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 NIY A 150 CA - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1160 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B6F RELATED DB: PDB REMARK 900 BIRCH POLLEN ALLERGEN BET V 1 REMARK 900 RELATED ID: 1BTV RELATED DB: PDB REMARK 900 STRUCTURE OF BET V 1, NMR, 20 STRUCTURES REMARK 900 RELATED ID: 1BV1 RELATED DB: PDB REMARK 900 BIRCH POLLEN ALLERGEN BET V 1 REMARK 900 RELATED ID: 1FSK RELATED DB: PDB REMARK 900 COMPLEX FORMATION BETWEEN A FAB FRAGMENT OF A MONOCLONALIGG REMARK 900 ANTIBODY AND THE MAJOR ALLERGEN FROM BIRCH POLLEN BET V1 REMARK 900 RELATED ID: 1LLT RELATED DB: PDB REMARK 900 BIRCH POLLEN ALLERGEN BET V 1 MUTANT E45S REMARK 900 RELATED ID: 1QMR RELATED DB: PDB REMARK 900 BIRCH POLLEN ALLERGEN BET V 1 MUTANT N28T, K32Q, E45S, P108G REMARK 900 RELATED ID: 4A80 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN REMARK 900 COMPLEX WITH 8-ANILINONAPHTHALENE-1-SULFONATE (ANS) REMARK 900 RELATED ID: 4A81 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN REMARK 900 TERNARY COMPLEX WITH 8-ANILINONAPHTHALENE-1- SULFONATE (ANS) AND REMARK 900 DEOXYCHOLIC ACID REMARK 900 RELATED ID: 4A83 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN REMARK 900 COMPLEX WITH DEOXYCHOLATE. REMARK 900 RELATED ID: 4A84 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A F30V REMARK 900 MUTANT IN COMPLEX WITH DEOXYCHOLATE. REMARK 900 RELATED ID: 4A85 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN REMARK 900 COMPLEX WITH KINETIN. REMARK 900 RELATED ID: 4A86 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN REMARK 900 TERNARY COMPLEX WITH KINETIN AND 8- ANILINONAPHTHALENE-1-SULFONATE REMARK 900 (ANS) REMARK 900 RELATED ID: 4A87 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN REMARK 900 COMPLEX WITH NARINGENIN. REMARK 900 RELATED ID: 4A88 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NATIVE MAJOR BIRCH POLLEN ALLERGEN BET V 1 REMARK 900 ISOFORM A REMARK 900 RELATED ID: 4A8G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MAJOR BIRCH POLLEN ALLERGEN BET V 1 A IN REMARK 900 COMPLEX WITH DIMETHYLBENZYLAMMONIUM PROPANE SULFONATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL METHIONINE PROCESSED, TYROSINES 5 66 83 AND 150 REMARK 999 NITRATED DBREF 4B9R A 1 159 UNP P15494 BEV1A_BETPN 2 160 SEQRES 1 A 159 GLY VAL PHE ASN NIY GLU THR GLU THR THR SER VAL ILE SEQRES 2 A 159 PRO ALA ALA ARG LEU PHE LYS ALA PHE ILE LEU ASP GLY SEQRES 3 A 159 ASP ASN LEU PHE PRO LYS VAL ALA PRO GLN ALA ILE SER SEQRES 4 A 159 SER VAL GLU ASN ILE GLU GLY ASN GLY GLY PRO GLY THR SEQRES 5 A 159 ILE LYS LYS ILE SER PHE PRO GLU GLY PHE PRO PHE LYS SEQRES 6 A 159 NIY VAL LYS ASP ARG VAL ASP GLU VAL ASP HIS THR ASN SEQRES 7 A 159 PHE LYS TYR ASN NIY SER VAL ILE GLU GLY GLY PRO ILE SEQRES 8 A 159 GLY ASP THR LEU GLU LYS ILE SER ASN GLU ILE LYS ILE SEQRES 9 A 159 VAL ALA THR PRO ASP GLY GLY SER ILE LEU LYS ILE SER SEQRES 10 A 159 ASN LYS TYR HIS THR LYS GLY ASP HIS GLU VAL LYS ALA SEQRES 11 A 159 GLU GLN VAL LYS ALA SER LYS GLU MET GLY GLU THR LEU SEQRES 12 A 159 LEU ARG ALA VAL GLU SER NIY LEU LEU ALA HIS SER ASP SEQRES 13 A 159 ALA TYR ASN MODRES 4B9R NIY A 5 TYR META-NITRO-TYROSINE MODRES 4B9R NIY A 66 TYR META-NITRO-TYROSINE MODRES 4B9R NIY A 83 TYR META-NITRO-TYROSINE MODRES 4B9R NIY A 150 TYR META-NITRO-TYROSINE HET NIY A 5 15 HET NIY A 66 15 HET NIY A 83 30 HET NIY A 150 15 HET SO4 A1160 5 HETNAM NIY META-NITRO-TYROSINE HETNAM SO4 SULFATE ION FORMUL 1 NIY 4(C9 H10 N2 O5) FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *104(H2 O) HELIX 1 1 PRO A 14 ILE A 23 1 10 HELIX 2 2 ASP A 25 ALA A 34 1 10 HELIX 3 3 LYS A 129 HIS A 154 1 26 SHEET 1 AA 7 VAL A 2 SER A 11 0 SHEET 2 AA 7 SER A 112 THR A 122 -1 O SER A 112 N SER A 11 SHEET 3 AA 7 LEU A 95 ALA A 106 -1 N GLU A 96 O HIS A 121 SHEET 4 AA 7 LYS A 80 GLY A 88 -1 O TYR A 81 N ILE A 102 SHEET 5 AA 7 NIY A 66 ASP A 75 -1 O LYS A 68 N ILE A 86 SHEET 6 AA 7 ILE A 53 SER A 57 -1 O LYS A 54 N ASP A 69 SHEET 7 AA 7 SER A 40 GLU A 45 -1 O SER A 40 N SER A 57 LINK C ASN A 4 N NIY A 5 1555 1555 1.63 LINK C NIY A 5 N GLU A 6 1555 1555 1.52 LINK C LYS A 65 N NIY A 66 1555 1555 1.39 LINK C NIY A 66 N VAL A 67 1555 1555 1.45 LINK C ASN A 82 N BNIY A 83 1555 1555 1.59 LINK C ASN A 82 N ANIY A 83 1555 1555 1.59 LINK C ANIY A 83 N SER A 84 1555 1555 1.59 LINK C BNIY A 83 N SER A 84 1555 1555 1.58 LINK C SER A 149 N NIY A 150 1555 1555 1.57 LINK C NIY A 150 N LEU A 151 1555 1555 1.18 SITE 1 AC1 4 LYS A 65 NIY A 66 HIS A 76 HOH A2104 CRYST1 32.410 55.140 37.610 90.00 92.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030855 0.000000 0.001493 0.00000 SCALE2 0.000000 0.018136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026620 0.00000