HEADER TRANSFERASE/DNA 06-SEP-12 4B9U TITLE STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE TITLE 2 FORMAMIDOPYRIMIDINE-DG DNA LESION -DA BASEPAIR IN THE POST-INSERTION TITLE 3 SITE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA POLYMERASE I; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*GP*AP)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: OXIDATIVE DNA LESION FAPYG AT C4; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*AP*AP*FOXP*CP*GP*AP*GP*TP*CP*AP*GP*GP*CP*TP)-3'; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: OXIDATIVE DNA LESION FAPYG AT C4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST007; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS DSM NO. 22; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 13 ORGANISM_TAXID: 1422; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 17 ORGANISM_TAXID: 1422 KEYWDS TRANSFERASE-DNA COMPLEX, OXIDATIVE DNA LESION, DNA DAMAGE, KEYWDS 2 TRANSLESION DNA SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR T.H.GEHRKE,U.LISCHKE,S.ARNOLD,S.SCHNEIDER,T.CARELL REVDAT 5 20-DEC-23 4B9U 1 REMARK LINK REVDAT 4 03-JUL-13 4B9U 1 JRNL REVDAT 3 29-MAY-13 4B9U 1 JRNL REVDAT 2 22-MAY-13 4B9U 1 AUTHOR JRNL REVDAT 1 17-APR-13 4B9U 0 JRNL AUTH T.H.GEHRKE,U.LISCHKE,K.L.GASTEIGER,S.SCHNEIDER,S.ARNOLD, JRNL AUTH 2 H.C.MULLER,D.S.STEPHENSON,H.ZIPSE,T.CARELL JRNL TITL UNEXPECTED NON-HOOGSTEEN-BASED MUTAGENICITY MECHANISM OF JRNL TITL 2 FAPY-DNA LESIONS. JRNL REF NAT.CHEM.BIOL. V. 9 455 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23685671 JRNL DOI 10.1038/NCHEMBIO.1254 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 49156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2590 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3348 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4653 REMARK 3 NUCLEIC ACID ATOMS : 495 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.97000 REMARK 3 B22 (A**2) : -1.94000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.420 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5315 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3547 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7289 ; 1.576 ; 1.915 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8626 ; 0.998 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 581 ; 5.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;35.914 ;24.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 875 ;14.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;22.637 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 799 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5539 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1082 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3489 -21.0094 -54.2200 REMARK 3 T TENSOR REMARK 3 T11: 0.1084 T22: 0.1034 REMARK 3 T33: 0.0323 T12: -0.0061 REMARK 3 T13: 0.0335 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.1655 L22: 2.0135 REMARK 3 L33: 1.5037 L12: 0.8051 REMARK 3 L13: 0.2235 L23: 0.7765 REMARK 3 S TENSOR REMARK 3 S11: -0.0895 S12: 0.4658 S13: -0.1000 REMARK 3 S21: -0.2336 S22: 0.1483 S23: -0.0257 REMARK 3 S31: 0.0521 S32: 0.0560 S33: -0.0588 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 349 A 408 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6727 -13.7256 -46.3523 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.0146 REMARK 3 T33: 0.0457 T12: 0.0010 REMARK 3 T13: 0.0016 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.8840 L22: 1.0502 REMARK 3 L33: 1.2381 L12: 0.5181 REMARK 3 L13: -0.5907 L23: -0.0649 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: 0.1421 S13: 0.1250 REMARK 3 S21: -0.1570 S22: 0.0290 S23: 0.0767 REMARK 3 S31: 0.0601 S32: 0.0145 S33: 0.0068 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 409 A 498 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3201 -20.2029 -39.8876 REMARK 3 T TENSOR REMARK 3 T11: 0.0270 T22: 0.0068 REMARK 3 T33: 0.0166 T12: 0.0051 REMARK 3 T13: 0.0058 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.9001 L22: 1.3124 REMARK 3 L33: 0.7311 L12: 0.5815 REMARK 3 L13: 0.0715 L23: 0.3256 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.0216 S13: -0.0792 REMARK 3 S21: -0.0310 S22: 0.0105 S23: -0.0273 REMARK 3 S31: 0.0751 S32: 0.0119 S33: 0.0048 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 499 A 597 REMARK 3 ORIGIN FOR THE GROUP (A): 38.6759 -7.9651 -12.2425 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.2128 REMARK 3 T33: 0.1467 T12: 0.0254 REMARK 3 T13: -0.0261 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.3700 L22: 0.5706 REMARK 3 L33: 3.8305 L12: -0.0691 REMARK 3 L13: 1.1706 L23: -0.4348 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: 0.0671 S13: 0.0442 REMARK 3 S21: 0.0620 S22: -0.1053 S23: -0.0560 REMARK 3 S31: 0.0709 S32: 0.2160 S33: 0.0888 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 598 A 654 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4730 0.6816 -28.3948 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.0505 REMARK 3 T33: 0.0624 T12: 0.0066 REMARK 3 T13: -0.0062 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.1281 L22: 1.5654 REMARK 3 L33: 0.5213 L12: 0.1386 REMARK 3 L13: -0.2191 L23: 0.0995 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: -0.1244 S13: 0.0317 REMARK 3 S21: 0.1259 S22: -0.0100 S23: -0.2066 REMARK 3 S31: 0.0631 S32: 0.1329 S33: -0.0193 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 655 A 734 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9810 -0.8911 -3.4704 REMARK 3 T TENSOR REMARK 3 T11: 0.0672 T22: 0.0317 REMARK 3 T33: 0.0464 T12: -0.0100 REMARK 3 T13: -0.0149 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.8560 L22: 1.1103 REMARK 3 L33: 1.5500 L12: 0.0042 REMARK 3 L13: 0.8856 L23: 0.1334 REMARK 3 S TENSOR REMARK 3 S11: 0.0845 S12: -0.1911 S13: -0.1009 REMARK 3 S21: 0.1492 S22: 0.0090 S23: -0.1180 REMARK 3 S31: 0.0740 S32: 0.0200 S33: -0.0935 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 735 A 796 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6642 -16.2659 -9.9983 REMARK 3 T TENSOR REMARK 3 T11: 0.1127 T22: 0.0329 REMARK 3 T33: 0.0503 T12: -0.0194 REMARK 3 T13: -0.0157 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 1.0245 L22: 1.8034 REMARK 3 L33: 0.8860 L12: 0.1589 REMARK 3 L13: -0.2652 L23: 1.0543 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: -0.1524 S13: -0.1144 REMARK 3 S21: 0.3140 S22: -0.0587 S23: -0.1066 REMARK 3 S31: 0.1803 S32: 0.0509 S33: 0.0115 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 797 A 876 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5550 7.3733 -29.5074 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.0064 REMARK 3 T33: 0.0480 T12: 0.0036 REMARK 3 T13: 0.0130 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.3216 L22: 1.1955 REMARK 3 L33: 1.2320 L12: 0.4478 REMARK 3 L13: -0.6183 L23: -0.6528 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.0263 S13: 0.0840 REMARK 3 S21: 0.0329 S22: -0.0008 S23: -0.0199 REMARK 3 S31: -0.0889 S32: 0.0021 S33: -0.0465 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 5 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8019 -25.7744 -24.5289 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.2475 REMARK 3 T33: 0.1510 T12: 0.0413 REMARK 3 T13: 0.0143 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 1.7135 L22: 4.7915 REMARK 3 L33: 12.0022 L12: 2.2403 REMARK 3 L13: 4.4965 L23: 5.4778 REMARK 3 S TENSOR REMARK 3 S11: 0.2169 S12: -0.0257 S13: -0.0554 REMARK 3 S21: 0.2902 S22: -0.0717 S23: 0.0455 REMARK 3 S31: 0.5328 S32: -0.2268 S33: -0.1453 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5839 -9.1756 -15.6009 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.0528 REMARK 3 T33: 0.0685 T12: -0.0130 REMARK 3 T13: 0.0311 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.4484 L22: 0.2004 REMARK 3 L33: 1.2319 L12: 0.2973 REMARK 3 L13: -0.0305 L23: 0.0338 REMARK 3 S TENSOR REMARK 3 S11: 0.1252 S12: -0.0362 S13: 0.1292 REMARK 3 S21: 0.1087 S22: -0.0542 S23: 0.0842 REMARK 3 S31: 0.0361 S32: -0.0929 S33: -0.0711 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 7 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6257 -14.5084 -15.3707 REMARK 3 T TENSOR REMARK 3 T11: 0.3089 T22: 0.2216 REMARK 3 T33: 0.2056 T12: 0.0118 REMARK 3 T13: 0.0160 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 3.4651 L22: 2.0416 REMARK 3 L33: 5.8041 L12: 1.9514 REMARK 3 L13: -2.9663 L23: -1.5061 REMARK 3 S TENSOR REMARK 3 S11: -0.1393 S12: -0.4241 S13: -0.0575 REMARK 3 S21: 0.3608 S22: -0.1932 S23: 0.0264 REMARK 3 S31: 0.3640 S32: 0.1398 S33: 0.3326 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1899 -20.6726 -21.1947 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.1981 REMARK 3 T33: 0.1841 T12: 0.0443 REMARK 3 T13: -0.0078 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 4.4876 L22: 0.9614 REMARK 3 L33: 1.0307 L12: -0.0823 REMARK 3 L13: 0.6002 L23: 0.9403 REMARK 3 S TENSOR REMARK 3 S11: 0.0754 S12: 0.0132 S13: -0.3720 REMARK 3 S21: 0.2788 S22: 0.0062 S23: -0.0027 REMARK 3 S31: 0.3160 S32: 0.0349 S33: -0.0816 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4B9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290053998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51802 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4B9M REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.37400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.82400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.92650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.82400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.37400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.92650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 258 REMARK 465 ALA A 259 REMARK 465 SER A 260 REMARK 465 TRP A 261 REMARK 465 SER A 262 REMARK 465 HIS A 263 REMARK 465 PRO A 264 REMARK 465 GLN A 265 REMARK 465 PHE A 266 REMARK 465 GLU A 267 REMARK 465 LYS A 268 REMARK 465 GLY A 269 REMARK 465 ALA A 270 REMARK 465 SER A 271 REMARK 465 THR A 272 REMARK 465 SER A 273 REMARK 465 LEU A 274 REMARK 465 TYR A 275 REMARK 465 LYS A 276 REMARK 465 LYS A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 279 REMARK 465 SER A 280 REMARK 465 ALA A 281 REMARK 465 ALA A 282 REMARK 465 ALA A 283 REMARK 465 VAL A 284 REMARK 465 LEU A 285 REMARK 465 GLU A 286 REMARK 465 GLU A 287 REMARK 465 ASN A 288 REMARK 465 LEU A 289 REMARK 465 TYR A 290 REMARK 465 PHE A 291 REMARK 465 GLN A 292 REMARK 465 GLY A 293 REMARK 465 SER A 294 REMARK 465 PHE A 295 REMARK 465 THR A 296 REMARK 465 DC C 1 REMARK 465 DA C 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 298 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 598 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 ARG A 615 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 750 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 DG C 6 O5' - P - OP1 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 402 97.80 -167.66 REMARK 500 ALA A 421 38.33 -88.92 REMARK 500 GLU A 540 -58.22 -121.05 REMARK 500 ILE A 588 -60.75 -98.86 REMARK 500 LEU A 610 -54.09 -124.98 REMARK 500 ILE A 628 -27.84 -147.62 REMARK 500 HIS A 768 19.37 80.52 REMARK 500 HIS A 829 -61.33 70.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ((1R,2S,4R)-4-{[2-AMINO-5-(FORMYLAMINO)-6-OXO-3, REMARK 600 6-DIHYDROPYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL)METHYL REMARK 600 5'-PHOSPHATE (FOX): ALSO PRESENT IN PDB CODE 1TDZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1882 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 653 OD2 REMARK 620 2 TYR A 654 O 82.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1877 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1878 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1879 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1880 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1881 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1882 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XO7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DA:O-ALLYLHYDROXYLAMINE-DC BASEPAIR IN REMARK 900 COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ARTIFICIAL SALEN-COPPER BASEPAIR IN COMPLEX REMARK 900 WITH FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SALICYLIC ALDEHYDE BASEPAIR IN COMPLEX WITH REMARK 900 FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SALICYLIC ALDEHYDE BASE IN THE PRE-INSERTION REMARK 900 SITE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2Y1I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A S-DIASTEREOMER ANALOGUE OF THE SPORE REMARK 900 PHOTOPRODUCT IN COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM REMARK 900 BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2Y1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A R-DIASTEREOMER ANALOGUE OF THE SPORE REMARK 900 PHOTOPRODUCT IN COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM REMARK 900 BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 4B9L RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH THE OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE A DNA LESION IN THE PRE-INSERTION SITE. REMARK 900 RELATED ID: 4B9M RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE A DNA LESION -THYMINE BASEPAIR IN THE POST- REMARK 900 INSERTION SITE. REMARK 900 RELATED ID: 4B9N RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I CORRECTLY BYPASSING REMARK 900 THE OXIDATIVE FORMAMIDOPYRIMIDINE A DNA LESION. REMARK 900 RELATED ID: 4B9S RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE DG DNA LESION OUTSIDE OF THE PRE-INSERTION SITE. REMARK 900 RELATED ID: 4B9T RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE DG DNA LESION -DC BASEPAIR IN THE POST- REMARK 900 INSERTION SITE. REMARK 900 RELATED ID: 4B9V RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH EXTENDING FROM REMARK 900 AN OXIDATIVE FORMAMIDOPYRIMIDINE DG DNA LESION -DA BASEPAIR. REMARK 999 REMARK 999 SEQUENCE REMARK 999 1-39 DISORDERED REMARK 999 RESIDUES 1 AND 2 ARE DISORDERED DBREF 4B9U A 297 876 UNP E1C9K5 E1C9K5_GEOSE 1 580 DBREF 4B9U B 1 11 PDB 4B9U 4B9U 1 11 DBREF 4B9U C 1 15 PDB 4B9U 4B9U 1 15 SEQADV 4B9U MET A 258 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U ALA A 259 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U SER A 260 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U TRP A 261 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U SER A 262 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U HIS A 263 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U PRO A 264 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U GLN A 265 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U PHE A 266 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U GLU A 267 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U LYS A 268 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U GLY A 269 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U ALA A 270 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U SER A 271 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U THR A 272 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U SER A 273 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U LEU A 274 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U TYR A 275 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U LYS A 276 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U LYS A 277 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U ALA A 278 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U GLY A 279 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U SER A 280 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U ALA A 281 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U ALA A 282 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U ALA A 283 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U VAL A 284 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U LEU A 285 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U GLU A 286 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U GLU A 287 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U ASN A 288 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U LEU A 289 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U TYR A 290 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U PHE A 291 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U GLN A 292 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U GLY A 293 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U SER A 294 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U PHE A 295 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9U THR A 296 UNP E1C9K5 EXPRESSION TAG SEQRES 1 A 619 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 619 SER THR SER LEU TYR LYS LYS ALA GLY SER ALA ALA ALA SEQRES 3 A 619 VAL LEU GLU GLU ASN LEU TYR PHE GLN GLY SER PHE THR SEQRES 4 A 619 ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 5 A 619 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 6 A 619 VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE SEQRES 7 A 619 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 8 A 619 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 9 A 619 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 10 A 619 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 11 A 619 CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 12 A 619 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 13 A 619 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 14 A 619 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 15 A 619 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 16 A 619 ALA ILE TRP ALA LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 17 A 619 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 18 A 619 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 19 A 619 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 20 A 619 GLU GLU LEU ALA GLU GLN LEU ARG THR VAL GLU GLN ARG SEQRES 21 A 619 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 22 A 619 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 23 A 619 LEU PRO VAL LEU LYS LYS SER LYS THR GLY TYR SER THR SEQRES 24 A 619 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 25 A 619 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 26 A 619 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 27 A 619 ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 28 A 619 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 29 A 619 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 30 A 619 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 31 A 619 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 32 A 619 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 33 A 619 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 34 A 619 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 35 A 619 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE SEQRES 36 A 619 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 37 A 619 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 38 A 619 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 39 A 619 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 40 A 619 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 41 A 619 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 42 A 619 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 43 A 619 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 44 A 619 GLU GLU ARG LEU GLN ALA ARG LEU LEU LEU GLN VAL HIS SEQRES 45 A 619 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 46 A 619 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 47 A 619 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 48 A 619 GLY SER THR TRP TYR ASP ALA LYS SEQRES 1 B 11 DG DC DC DT DG DA DC DT DC DG DA SEQRES 1 C 15 DC DA DA FOX DC DG DA DG DT DC DA DG DG SEQRES 2 C 15 DC DT MODRES 4B9U FOX C 4 DG HET FOX C 4 23 HET SO4 A1877 5 HET SO4 A1878 5 HET SO4 A1879 5 HET SO4 A1880 5 HET SO4 A1881 5 HET MG A1882 1 HETNAM FOX ((1R,2S,4R)-4-{[2-AMINO-5-(FORMYLAMINO)-6-OXO-3,6- HETNAM 2 FOX DIHYDROPYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL) HETNAM 3 FOX METHYL 5'-PHOSPHATE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 3 FOX C11 H18 N5 O7 P FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 MG MG 2+ FORMUL 10 HOH *191(H2 O) HELIX 1 1 THR A 308 ALA A 313 5 6 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 TRP A 382 1 11 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 GLY A 430 1 7 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 LEU A 477 1 8 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 GLY A 523 1 28 HELIX 14 14 SER A 530 GLU A 540 1 11 HELIX 15 15 SER A 557 ALA A 565 1 9 HELIX 16 16 PRO A 566 HIS A 568 5 3 HELIX 17 17 GLU A 569 ILE A 588 1 20 HELIX 18 18 ILE A 588 LYS A 593 1 6 HELIX 19 19 LEU A 630 LYS A 635 1 6 HELIX 20 20 ILE A 636 GLN A 638 5 3 HELIX 21 21 GLN A 656 GLU A 667 1 12 HELIX 22 22 ASP A 668 ARG A 677 1 10 HELIX 23 23 ASP A 680 GLN A 691 1 12 HELIX 24 24 SER A 693 VAL A 697 5 5 HELIX 25 25 THR A 698 GLY A 715 1 18 HELIX 26 26 SER A 717 ASN A 726 1 10 HELIX 27 27 SER A 728 PHE A 743 1 16 HELIX 28 28 PHE A 743 GLY A 761 1 19 HELIX 29 29 PRO A 774 SER A 778 5 5 HELIX 30 30 ASN A 780 GLU A 818 1 39 HELIX 31 31 GLU A 840 ALA A 855 1 16 SHEET 1 AA 6 THR A 302 LEU A 303 0 SHEET 2 AA 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 AA 6 GLY A 334 ASN A 339 -1 O ILE A 335 N LEU A 346 SHEET 4 AA 6 LYS A 315 GLU A 321 -1 O ALA A 317 N VAL A 338 SHEET 5 AA 6 LYS A 367 MET A 370 1 O LYS A 367 N ALA A 316 SHEET 6 AA 6 VAL A 390 ASP A 393 1 N SER A 391 O LYS A 368 SHEET 1 AB 3 LYS A 601 VAL A 602 0 SHEET 2 AB 3 VAL A 493 VAL A 495 -1 O VAL A 493 N VAL A 602 SHEET 3 AB 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 AC 2 ILE A 605 ASN A 607 0 SHEET 2 AC 2 SER A 617 THR A 619 -1 O SER A 617 N ASN A 607 SHEET 1 AD 4 ARG A 823 GLN A 827 0 SHEET 2 AD 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 AD 4 TRP A 647 TYR A 654 -1 O LEU A 648 N ALA A 836 SHEET 4 AD 4 VAL A 864 GLY A 869 -1 O ASP A 865 N ASP A 653 SHEET 1 AE 2 TYR A 762 THR A 764 0 SHEET 2 AE 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 LINK O3' DA C 3 P FOX C 4 1555 1555 1.63 LINK O3' FOX C 4 P DC C 5 1555 1555 1.60 LINK OD2 ASP A 653 MG MG A1882 1555 1555 2.68 LINK O TYR A 654 MG MG A1882 1555 1555 2.63 CISPEP 1 GLU A 620 PRO A 621 0 0.36 SITE 1 AC1 4 HIS A 682 ARG A 702 LYS A 706 HOH A2124 SITE 1 AC2 4 MET A 299 ALA A 300 ARG A 343 ARG A 677 SITE 1 AC3 2 ARG A 779 ARG A 819 SITE 1 AC4 5 SER A 655 GLN A 656 MG A1882 HOH A2122 SITE 2 AC4 5 HOH A2124 SITE 1 AC5 4 GLU A 321 VAL A 322 ASP A 425 TYR A 429 SITE 1 AC6 4 ASP A 653 TYR A 654 ASP A 830 SO4 A1880 CRYST1 88.748 93.853 105.648 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009465 0.00000