HEADER TRANSFERASE/DNA 06-SEP-12 4B9V TITLE STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH EXTENDING FROM AN TITLE 2 OXIDATIVE FORMAMIDOPYRIMIDINE-DG DNA LESION -DA BASEPAIR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA POLYMERASE I; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*TP*AP*AP)-3'; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: OXIDATIVE DNA LESION FAPYG AT C4; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*AP*TP*FOXP*AP*GP*AP*GP*TP*CP*AP*GP*GP*CP*TP)-3'; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: OXIDATIVE DNA LESION FAPYG AT C4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PDEST007; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS DSM NO. 22; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 13 ORGANISM_TAXID: 1422; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 17 ORGANISM_TAXID: 1422 KEYWDS TRANSFERASE-DNA COMPLEX, DNA POLYMERASE, OXIDATIVE DNA LESION, DNA KEYWDS 2 DAMAGE, TRANSLESION DNA SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR T.H.GEHRKE,U.LISCHKE,S.ARNOLD,S.SCHNEIDER,T.CARELL REVDAT 5 20-DEC-23 4B9V 1 REMARK LINK REVDAT 4 03-JUL-13 4B9V 1 JRNL REVDAT 3 29-MAY-13 4B9V 1 JRNL REVDAT 2 22-MAY-13 4B9V 1 AUTHOR JRNL REVDAT 1 17-APR-13 4B9V 0 JRNL AUTH T.H.GEHRKE,U.LISCHKE,K.L.GASTEIGER,S.SCHNEIDER,S.ARNOLD, JRNL AUTH 2 H.C.MULLER,D.S.STEPHENSON,H.ZIPSE,T.CARELL JRNL TITL UNEXPECTED NON-HOOGSTEEN-BASED MUTAGENICITY MECHANISM OF JRNL TITL 2 FAPY-DNA LESIONS. JRNL REF NAT.CHEM.BIOL. V. 9 455 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23685671 JRNL DOI 10.1038/NCHEMBIO.1254 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 56504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2965 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3897 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4648 REMARK 3 NUCLEIC ACID ATOMS : 473 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.12000 REMARK 3 B22 (A**2) : -1.19000 REMARK 3 B33 (A**2) : -0.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.150 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5325 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3562 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7307 ; 1.593 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8673 ; 0.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 592 ; 5.545 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;34.474 ;24.052 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 887 ;13.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;20.352 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 805 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5563 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1081 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4078 21.1037 54.0956 REMARK 3 T TENSOR REMARK 3 T11: 0.1323 T22: 0.0920 REMARK 3 T33: 0.0358 T12: 0.0063 REMARK 3 T13: -0.0171 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 4.1416 L22: 3.7943 REMARK 3 L33: 2.2008 L12: -2.2055 REMARK 3 L13: -0.6406 L23: 1.6023 REMARK 3 S TENSOR REMARK 3 S11: -0.1177 S12: -0.6114 S13: 0.2607 REMARK 3 S21: 0.3866 S22: 0.2588 S23: -0.1703 REMARK 3 S31: -0.1115 S32: 0.0703 S33: -0.1411 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 349 A 408 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6612 13.8418 46.2635 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.0348 REMARK 3 T33: 0.0342 T12: -0.0241 REMARK 3 T13: -0.0006 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 3.4344 L22: 1.3028 REMARK 3 L33: 2.2787 L12: -1.5516 REMARK 3 L13: 1.1398 L23: -0.0630 REMARK 3 S TENSOR REMARK 3 S11: -0.0813 S12: -0.2488 S13: -0.1636 REMARK 3 S21: 0.2292 S22: 0.0834 S23: 0.0840 REMARK 3 S31: -0.1005 S32: 0.0466 S33: -0.0021 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 409 A 498 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2997 20.3200 39.7807 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0173 REMARK 3 T33: 0.0234 T12: -0.0061 REMARK 3 T13: 0.0007 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.0103 L22: 2.2198 REMARK 3 L33: 1.1495 L12: -0.9124 REMARK 3 L13: -0.1307 L23: 0.5766 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0174 S13: 0.1411 REMARK 3 S21: -0.0002 S22: -0.0014 S23: -0.0748 REMARK 3 S31: -0.0944 S32: 0.0351 S33: 0.0004 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 499 A 597 REMARK 3 ORIGIN FOR THE GROUP (A): 38.4610 7.9211 12.1882 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.2266 REMARK 3 T33: 0.1621 T12: -0.0307 REMARK 3 T13: 0.0140 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.5620 L22: 1.1710 REMARK 3 L33: 7.3412 L12: 0.5188 REMARK 3 L13: -1.9919 L23: -1.4474 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.1013 S13: -0.0394 REMARK 3 S21: -0.1615 S22: -0.0296 S23: -0.0998 REMARK 3 S31: -0.0630 S32: 0.3077 S33: 0.0330 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 598 A 654 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3495 -0.6472 28.2462 REMARK 3 T TENSOR REMARK 3 T11: 0.0583 T22: 0.0414 REMARK 3 T33: 0.0404 T12: 0.0032 REMARK 3 T13: 0.0032 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.0130 L22: 2.4683 REMARK 3 L33: 0.9982 L12: -0.2311 REMARK 3 L13: 0.4045 L23: 0.0358 REMARK 3 S TENSOR REMARK 3 S11: 0.0558 S12: 0.1278 S13: -0.0217 REMARK 3 S21: -0.1224 S22: -0.0624 S23: -0.2817 REMARK 3 S31: -0.0055 S32: 0.1910 S33: 0.0065 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 655 A 734 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7158 0.9382 3.4508 REMARK 3 T TENSOR REMARK 3 T11: 0.1042 T22: 0.0514 REMARK 3 T33: 0.0468 T12: -0.0019 REMARK 3 T13: 0.0088 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 3.6892 L22: 1.8112 REMARK 3 L33: 3.2095 L12: -0.5173 REMARK 3 L13: -2.3773 L23: 0.3536 REMARK 3 S TENSOR REMARK 3 S11: 0.1332 S12: 0.2798 S13: 0.1890 REMARK 3 S21: -0.2468 S22: 0.0084 S23: -0.1959 REMARK 3 S31: -0.2273 S32: 0.0301 S33: -0.1416 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 735 A 796 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6056 16.3420 9.9735 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.0807 REMARK 3 T33: 0.0662 T12: 0.0272 REMARK 3 T13: 0.0152 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.4542 L22: 2.3695 REMARK 3 L33: 2.2737 L12: 0.2727 REMARK 3 L13: 1.1213 L23: 1.7853 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.2874 S13: 0.1335 REMARK 3 S21: -0.3716 S22: 0.0189 S23: -0.0989 REMARK 3 S31: -0.2056 S32: 0.1402 S33: -0.0055 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 797 A 876 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4073 -7.3073 29.4217 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.0075 REMARK 3 T33: 0.0379 T12: -0.0062 REMARK 3 T13: -0.0118 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.1069 L22: 1.8341 REMARK 3 L33: 1.3020 L12: -0.9163 REMARK 3 L13: 0.7787 L23: -0.8405 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: 0.0030 S13: -0.1837 REMARK 3 S21: -0.0493 S22: -0.0280 S23: 0.0158 REMARK 3 S31: 0.1177 S32: -0.0278 S33: -0.0397 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 5 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.1290 REMARK 3 T33: 0.1290 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.1290 REMARK 3 T33: 0.1290 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 7 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4730 12.8786 18.5721 REMARK 3 T TENSOR REMARK 3 T11: 0.7457 T22: 0.2509 REMARK 3 T33: 0.4110 T12: 0.0292 REMARK 3 T13: -0.2055 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 6.9751 L22: 0.3521 REMARK 3 L33: 1.1807 L12: -1.5477 REMARK 3 L13: -2.8649 L23: 0.6412 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: 1.2253 S13: -0.4307 REMARK 3 S21: -0.0917 S22: -0.2700 S23: 0.1348 REMARK 3 S31: -0.0840 S32: -0.5057 S33: 0.1950 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9778 20.6624 21.1122 REMARK 3 T TENSOR REMARK 3 T11: 0.5545 T22: 0.3220 REMARK 3 T33: 0.2612 T12: -0.0880 REMARK 3 T13: -0.0778 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 8.2763 L22: 0.6765 REMARK 3 L33: 3.0500 L12: -1.6109 REMARK 3 L13: -3.2403 L23: 1.4341 REMARK 3 S TENSOR REMARK 3 S11: 0.0955 S12: -0.3353 S13: 0.7674 REMARK 3 S21: -0.4423 S22: -0.0373 S23: -0.0247 REMARK 3 S31: -0.9765 S32: 0.0316 S33: -0.0582 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 4B9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290054000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59511 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDN ENTRY 4B9M REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.95050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.67050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.01750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.67050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.95050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.01750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 258 REMARK 465 ALA A 259 REMARK 465 SER A 260 REMARK 465 TRP A 261 REMARK 465 SER A 262 REMARK 465 HIS A 263 REMARK 465 PRO A 264 REMARK 465 GLN A 265 REMARK 465 PHE A 266 REMARK 465 GLU A 267 REMARK 465 LYS A 268 REMARK 465 GLY A 269 REMARK 465 ALA A 270 REMARK 465 SER A 271 REMARK 465 THR A 272 REMARK 465 SER A 273 REMARK 465 LEU A 274 REMARK 465 TYR A 275 REMARK 465 LYS A 276 REMARK 465 LYS A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 279 REMARK 465 SER A 280 REMARK 465 ALA A 281 REMARK 465 ALA A 282 REMARK 465 ALA A 283 REMARK 465 VAL A 284 REMARK 465 LEU A 285 REMARK 465 GLU A 286 REMARK 465 GLU A 287 REMARK 465 ASN A 288 REMARK 465 LEU A 289 REMARK 465 TYR A 290 REMARK 465 PHE A 291 REMARK 465 GLN A 292 REMARK 465 GLY A 293 REMARK 465 SER A 294 REMARK 465 PHE A 295 REMARK 465 THR A 296 REMARK 465 ALA A 297 REMARK 465 DC C 2 REMARK 465 DA C 3 REMARK 465 DT C 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 298 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 843 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 843 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 859 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 859 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 60.62 62.73 REMARK 500 ASP A 402 95.96 -167.15 REMARK 500 ALA A 421 43.15 -90.67 REMARK 500 LEU A 477 -65.57 -123.14 REMARK 500 GLN A 524 145.48 -176.78 REMARK 500 LEU A 610 -53.64 -121.42 REMARK 500 ILE A 628 -31.58 -149.33 REMARK 500 HIS A 768 19.51 87.38 REMARK 500 SER A 778 142.30 -25.35 REMARK 500 HIS A 829 -59.85 66.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ((1R,2S,4R)-4-{[2-AMINO-5-(FORMYLAMINO)-6-OXO-3, REMARK 600 6-DIHYDROPYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL)METHYL REMARK 600 5'-PHOSPHATE (FOX): ALSO PRESENT IN PDB CODE 1TDZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1883 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 653 OD2 REMARK 620 2 TYR A 654 O 78.2 REMARK 620 3 ASP A 830 OD2 126.7 75.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1877 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1878 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1879 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1880 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1881 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1882 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1883 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XO7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DA:O-ALLYLHYDROXYLAMINE-DC BASEPAIR IN REMARK 900 COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM BACILLUS REMARK 900 STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN ARTIFICIAL SALEN-COPPER BASEPAIR IN COMPLEX REMARK 900 WITH FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SALICYLIC ALDEHYDE BASEPAIR IN COMPLEX WITH REMARK 900 FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2XY7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SALICYLIC ALDEHYDE BASE IN THE PRE-INSERTION REMARK 900 SITE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2Y1I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A S-DIASTEREOMER ANALOGUE OF THE SPORE REMARK 900 PHOTOPRODUCT IN COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM REMARK 900 BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 2Y1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A R-DIASTEREOMER ANALOGUE OF THE SPORE REMARK 900 PHOTOPRODUCT IN COMPLEX WITH FRAGMENT DNA POLYMERASE I FROM REMARK 900 BACILLUS STEAROTHERMOPHILUS REMARK 900 RELATED ID: 4B9L RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH THE OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE-DA DNA LESION IN THE PRE-INSERTION SITE. REMARK 900 RELATED ID: 4B9M RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE-DA DNA LESION -THYMINE BASEPAIR IN THE POST- REMARK 900 INSERTION SITE. REMARK 900 RELATED ID: 4B9N RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I CORRECTLY BYPASSING REMARK 900 THE OXIDATIVE FORMAMIDOPYRIMIDINE-DA DNA LESION. REMARK 900 RELATED ID: 4B9S RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE-DG DNA LESION OUTSIDE OF THE PRE-INSERTION SITE. REMARK 900 RELATED ID: 4B9T RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE-DG DNA LESION -DC BASEPAIR IN THE POST- REMARK 900 INSERTION SITE. REMARK 900 RELATED ID: 4B9U RELATED DB: PDB REMARK 900 STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH AN OXIDATIVE REMARK 900 FORMAMIDOPYRIMIDINE-DG DNA LESION -DA BASEPAIR IN THE POST- REMARK 900 INSERTION SITE. REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAIN A 1-40 DISORDERED REMARK 999 CHAIN B RESI 1 DISORDERED REMARK 999 CHAIN C RESIDUES 1,2 AND 15 ARE DISORDERED DBREF 4B9V A 297 876 UNP E1C9K5 E1C9K5_GEOSE 1 580 DBREF 4B9V B 1 11 PDB 4B9V 4B9V 1 11 DBREF 4B9V C 2 16 PDB 4B9V 4B9V 2 16 SEQADV 4B9V MET A 258 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V ALA A 259 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V SER A 260 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V TRP A 261 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V SER A 262 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V HIS A 263 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V PRO A 264 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V GLN A 265 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V PHE A 266 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V GLU A 267 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V LYS A 268 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V GLY A 269 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V ALA A 270 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V SER A 271 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V THR A 272 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V SER A 273 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V LEU A 274 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V TYR A 275 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V LYS A 276 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V LYS A 277 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V ALA A 278 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V GLY A 279 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V SER A 280 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V ALA A 281 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V ALA A 282 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V ALA A 283 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V VAL A 284 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V LEU A 285 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V GLU A 286 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V GLU A 287 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V ASN A 288 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V LEU A 289 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V TYR A 290 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V PHE A 291 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V GLN A 292 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V GLY A 293 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V SER A 294 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V PHE A 295 UNP E1C9K5 EXPRESSION TAG SEQADV 4B9V THR A 296 UNP E1C9K5 EXPRESSION TAG SEQRES 1 A 619 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 619 SER THR SER LEU TYR LYS LYS ALA GLY SER ALA ALA ALA SEQRES 3 A 619 VAL LEU GLU GLU ASN LEU TYR PHE GLN GLY SER PHE THR SEQRES 4 A 619 ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU SEQRES 5 A 619 GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL SEQRES 6 A 619 VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE SEQRES 7 A 619 ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO SEQRES 8 A 619 GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU SEQRES 9 A 619 GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS SEQRES 10 A 619 ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU SEQRES 11 A 619 CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU SEQRES 12 A 619 LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA SEQRES 13 A 619 ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU SEQRES 14 A 619 ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP SEQRES 15 A 619 GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA SEQRES 16 A 619 ALA ILE TRP ALA LEU GLU ARG PRO PHE LEU ASP GLU LEU SEQRES 17 A 619 ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU SEQRES 18 A 619 GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA SEQRES 19 A 619 GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY SEQRES 20 A 619 GLU GLU LEU ALA GLU GLN LEU ARG THR VAL GLU GLN ARG SEQRES 21 A 619 ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER SEQRES 22 A 619 PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN SEQRES 23 A 619 LEU PRO VAL LEU LYS LYS SER LYS THR GLY TYR SER THR SEQRES 24 A 619 SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU SEQRES 25 A 619 ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS SEQRES 26 A 619 LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL SEQRES 27 A 619 ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN SEQRES 28 A 619 ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO SEQRES 29 A 619 ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG SEQRES 30 A 619 LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP SEQRES 31 A 619 LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG SEQRES 32 A 619 VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU SEQRES 33 A 619 ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA SEQRES 34 A 619 MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO SEQRES 35 A 619 ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE SEQRES 36 A 619 VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU SEQRES 37 A 619 ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG SEQRES 38 A 619 TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU SEQRES 39 A 619 ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR SEQRES 40 A 619 THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SEQRES 41 A 619 SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET SEQRES 42 A 619 ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE SEQRES 43 A 619 ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS SEQRES 44 A 619 GLU GLU ARG LEU GLN ALA ARG LEU LEU LEU GLN VAL HIS SEQRES 45 A 619 ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU SEQRES 46 A 619 ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA SEQRES 47 A 619 VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR SEQRES 48 A 619 GLY SER THR TRP TYR ASP ALA LYS SEQRES 1 B 11 DC DC DT DG DA DC DT DC DT DA DA SEQRES 1 C 15 DC DA DT FOX DA DG DA DG DT DC DA DG DG SEQRES 2 C 15 DC DT MODRES 4B9V FOX C 5 DG HET FOX C 5 23 HET SO4 A1877 5 HET SO4 A1878 5 HET SO4 A1879 5 HET SO4 A1880 5 HET SO4 A1881 5 HET SO4 A1882 5 HET MG A1883 1 HETNAM FOX ((1R,2S,4R)-4-{[2-AMINO-5-(FORMYLAMINO)-6-OXO-3,6- HETNAM 2 FOX DIHYDROPYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL) HETNAM 3 FOX METHYL 5'-PHOSPHATE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 3 FOX C11 H18 N5 O7 P FORMUL 4 SO4 6(O4 S 2-) FORMUL 10 MG MG 2+ FORMUL 11 HOH *175(H2 O) HELIX 1 1 THR A 308 ALA A 313 5 6 HELIX 2 2 ARG A 347 LEU A 352 1 6 HELIX 3 3 ASP A 354 ASP A 363 1 10 HELIX 4 4 ASP A 372 TRP A 382 1 11 HELIX 5 5 LEU A 394 ASP A 402 1 9 HELIX 6 6 PRO A 403 GLY A 406 5 4 HELIX 7 7 ASP A 409 MET A 416 1 8 HELIX 8 8 PRO A 424 GLY A 430 1 7 HELIX 9 9 LYS A 431 ARG A 435 5 5 HELIX 10 10 ASP A 439 ASN A 468 1 30 HELIX 11 11 GLN A 470 LEU A 477 1 8 HELIX 12 12 LEU A 477 GLY A 492 1 16 HELIX 13 13 ASP A 496 GLY A 523 1 28 HELIX 14 14 SER A 530 GLU A 540 1 11 HELIX 15 15 SER A 557 ALA A 565 1 9 HELIX 16 16 PRO A 566 HIS A 568 5 3 HELIX 17 17 GLU A 569 TYR A 587 1 19 HELIX 18 18 ILE A 588 LYS A 593 1 6 HELIX 19 19 LEU A 630 LYS A 635 1 6 HELIX 20 20 ILE A 636 GLN A 638 5 3 HELIX 21 21 GLN A 656 GLU A 667 1 12 HELIX 22 22 ASP A 668 ARG A 677 1 10 HELIX 23 23 ASP A 680 GLN A 691 1 12 HELIX 24 24 SER A 693 VAL A 697 5 5 HELIX 25 25 THR A 698 GLY A 715 1 18 HELIX 26 26 SER A 717 ASN A 726 1 10 HELIX 27 27 SER A 728 PHE A 743 1 16 HELIX 28 28 PHE A 743 GLY A 761 1 19 HELIX 29 29 PRO A 774 THR A 777 5 4 HELIX 30 30 ASN A 780 GLU A 818 1 39 HELIX 31 31 GLU A 840 GLN A 854 1 15 SHEET 1 AA 6 THR A 302 ALA A 304 0 SHEET 2 AA 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 AA 6 GLY A 334 ASN A 339 -1 O ILE A 335 N LEU A 346 SHEET 4 AA 6 LYS A 315 GLU A 321 -1 O ALA A 317 N VAL A 338 SHEET 5 AA 6 LYS A 367 MET A 370 1 O LYS A 367 N ALA A 316 SHEET 6 AA 6 VAL A 390 ASP A 393 1 N SER A 391 O LYS A 368 SHEET 1 AB 3 LYS A 601 VAL A 602 0 SHEET 2 AB 3 VAL A 493 VAL A 495 -1 O VAL A 493 N VAL A 602 SHEET 3 AB 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 AC 2 ILE A 605 ASN A 607 0 SHEET 2 AC 2 SER A 617 THR A 619 -1 O SER A 617 N ASN A 607 SHEET 1 AD 4 ARG A 823 GLN A 827 0 SHEET 2 AD 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 AD 4 TRP A 647 TYR A 654 -1 O LEU A 648 N ALA A 836 SHEET 4 AD 4 VAL A 864 GLY A 869 -1 O ASP A 865 N ASP A 653 SHEET 1 AE 2 TYR A 762 THR A 764 0 SHEET 2 AE 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 LINK O3' DT C 4 P FOX C 5 1555 1555 1.60 LINK O3' FOX C 5 P DA C 6 1555 1555 1.60 LINK OD2 ASP A 653 MG MG A1883 1555 1555 2.81 LINK O TYR A 654 MG MG A1883 1555 1555 2.75 LINK OD2 ASP A 830 MG MG A1883 1555 1555 2.94 CISPEP 1 GLU A 620 PRO A 621 0 6.09 SITE 1 AC1 4 HIS A 682 ARG A 702 LYS A 706 HOH A2123 SITE 1 AC2 4 MET A 299 ALA A 300 ARG A 343 ARG A 677 SITE 1 AC3 4 GLU A 321 VAL A 322 ASP A 425 TYR A 429 SITE 1 AC4 6 GLU A 667 ASP A 668 ASP A 669 GLY A 745 SITE 2 AC4 6 ARG A 748 HOH A2128 SITE 1 AC5 3 HIS A 568 ARG A 779 ARG A 819 SITE 1 AC6 4 SER A 655 GLN A 656 MG A1883 HOH A2118 SITE 1 AC7 4 ASP A 653 TYR A 654 ASP A 830 SO4 A1882 CRYST1 87.901 94.035 105.341 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009493 0.00000