data_4B9W # _entry.id 4B9W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.305 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4B9W PDBE EBI-54012 WWPDB D_1290054012 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4B9X _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF EXTENDED TUDOR DOMAIN TD3 FROM MOUSE TDRD1' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4B9W _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-09-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mathioudakis, N.' 1 ? 'Palencia, A.' 2 ? 'Kadlec, J.' 3 ? 'Round, A.' 4 ? 'Tripsianes, K.' 5 ? 'Sattler, M.' 6 ? 'Pillai, R.S.' 7 ? 'Cusack, S.' 8 ? # _citation.id primary _citation.title 'The multiple Tudor domain-containing protein TDRD1 is a molecular scaffold for mouse Piwi proteins and piRNA biogenesis factors.' _citation.journal_abbrev Rna _citation.journal_volume 18 _citation.page_first 2056 _citation.page_last 2072 _citation.year 2012 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1469-9001 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22996915 _citation.pdbx_database_id_DOI 10.1261/rna.034181.112 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mathioudakis, N.' 1 ? primary 'Palencia, A.' 2 ? primary 'Kadlec, J.' 3 ? primary 'Round, A.' 4 ? primary 'Tripsianes, K.' 5 ? primary 'Sattler, M.' 6 ? primary 'Pillai, R.S.' 7 ? primary 'Cusack, S.' 8 ? # _cell.entry_id 4B9W _cell.length_a 39.940 _cell.length_b 53.960 _cell.length_c 60.790 _cell.angle_alpha 93.69 _cell.angle_beta 98.56 _cell.angle_gamma 111.68 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B9W _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TUDOR DOMAIN-CONTAINING PROTEIN 1' 22578.844 2 ? ? 'EXTENDED TUDOR DOMAIN TD3, RESIDUES 692-892' ? 2 polymer syn 'PIWI-LIKE PROTEIN 2' 1343.582 2 ? ? 'N-TERMINAL PEPTIDE CONTAINING METHYLATED ARG45, RESIDUES 38-50' 'ARG45 IS SYMMETRICALLY DIMETHYLATED' 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 water nat water 18.015 186 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 TDRD1 2 MILI # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPAEALEWTWVEFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDG NWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPPNKHWTKEATARFQACVVGLKL QARVVEITANGVGVELTDLSTPYPKIISDVLIREQLVLRCG ; ;GPAEALEWTWVEFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDG NWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPPNKHWTKEATARFQACVVGLKL QARVVEITANGVGVELTDLSTPYPKIISDVLIREQLVLRCG ; A,B ? 2 'polypeptide(L)' no yes 'GRAGPAG(2MR)GLVFR' GRAGPAGRGLVFR P,S ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 ALA n 1 4 GLU n 1 5 ALA n 1 6 LEU n 1 7 GLU n 1 8 TRP n 1 9 THR n 1 10 TRP n 1 11 VAL n 1 12 GLU n 1 13 PHE n 1 14 THR n 1 15 VAL n 1 16 ASP n 1 17 GLU n 1 18 THR n 1 19 VAL n 1 20 ASP n 1 21 VAL n 1 22 VAL n 1 23 VAL n 1 24 CYS n 1 25 MET n 1 26 MET n 1 27 TYR n 1 28 SER n 1 29 PRO n 1 30 GLY n 1 31 GLU n 1 32 PHE n 1 33 TYR n 1 34 CYS n 1 35 HIS n 1 36 PHE n 1 37 LEU n 1 38 LYS n 1 39 ASP n 1 40 ASP n 1 41 ALA n 1 42 LEU n 1 43 GLU n 1 44 LYS n 1 45 LEU n 1 46 ASP n 1 47 ASP n 1 48 LEU n 1 49 ASN n 1 50 GLN n 1 51 SER n 1 52 LEU n 1 53 ALA n 1 54 ASP n 1 55 TYR n 1 56 CYS n 1 57 ALA n 1 58 GLN n 1 59 LYS n 1 60 PRO n 1 61 PRO n 1 62 ASN n 1 63 GLY n 1 64 PHE n 1 65 LYS n 1 66 ALA n 1 67 GLU n 1 68 ILE n 1 69 GLY n 1 70 ARG n 1 71 PRO n 1 72 CYS n 1 73 CYS n 1 74 ALA n 1 75 PHE n 1 76 PHE n 1 77 SER n 1 78 GLY n 1 79 ASP n 1 80 GLY n 1 81 ASN n 1 82 TRP n 1 83 TYR n 1 84 ARG n 1 85 ALA n 1 86 LEU n 1 87 VAL n 1 88 LYS n 1 89 GLU n 1 90 ILE n 1 91 LEU n 1 92 PRO n 1 93 SER n 1 94 GLY n 1 95 ASN n 1 96 VAL n 1 97 LYS n 1 98 VAL n 1 99 HIS n 1 100 PHE n 1 101 VAL n 1 102 ASP n 1 103 TYR n 1 104 GLY n 1 105 ASN n 1 106 VAL n 1 107 GLU n 1 108 GLU n 1 109 VAL n 1 110 THR n 1 111 THR n 1 112 ASP n 1 113 GLN n 1 114 LEU n 1 115 GLN n 1 116 ALA n 1 117 ILE n 1 118 LEU n 1 119 PRO n 1 120 GLN n 1 121 PHE n 1 122 LEU n 1 123 LEU n 1 124 LEU n 1 125 PRO n 1 126 PHE n 1 127 GLN n 1 128 GLY n 1 129 MET n 1 130 GLN n 1 131 CYS n 1 132 TRP n 1 133 LEU n 1 134 VAL n 1 135 ASP n 1 136 ILE n 1 137 GLN n 1 138 PRO n 1 139 PRO n 1 140 ASN n 1 141 LYS n 1 142 HIS n 1 143 TRP n 1 144 THR n 1 145 LYS n 1 146 GLU n 1 147 ALA n 1 148 THR n 1 149 ALA n 1 150 ARG n 1 151 PHE n 1 152 GLN n 1 153 ALA n 1 154 CYS n 1 155 VAL n 1 156 VAL n 1 157 GLY n 1 158 LEU n 1 159 LYS n 1 160 LEU n 1 161 GLN n 1 162 ALA n 1 163 ARG n 1 164 VAL n 1 165 VAL n 1 166 GLU n 1 167 ILE n 1 168 THR n 1 169 ALA n 1 170 ASN n 1 171 GLY n 1 172 VAL n 1 173 GLY n 1 174 VAL n 1 175 GLU n 1 176 LEU n 1 177 THR n 1 178 ASP n 1 179 LEU n 1 180 SER n 1 181 THR n 1 182 PRO n 1 183 TYR n 1 184 PRO n 1 185 LYS n 1 186 ILE n 1 187 ILE n 1 188 SER n 1 189 ASP n 1 190 VAL n 1 191 LEU n 1 192 ILE n 1 193 ARG n 1 194 GLU n 1 195 GLN n 1 196 LEU n 1 197 VAL n 1 198 LEU n 1 199 ARG n 1 200 CYS n 1 201 GLY n 2 1 GLY n 2 2 ARG n 2 3 ALA n 2 4 GLY n 2 5 PRO n 2 6 ALA n 2 7 GLY n 2 8 2MR n 2 9 GLY n 2 10 LEU n 2 11 VAL n 2 12 PHE n 2 13 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PETM11 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'MUS MUSCULUS' _pdbx_entity_src_syn.organism_common_name 'HOUSE MOUSE' _pdbx_entity_src_syn.ncbi_taxonomy_id 10090 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP TDRD1_MOUSE 1 ? ? Q99MV1 ? 2 UNP PIWL2_MOUSE 2 ? ? Q8CDG1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4B9W A 1 ? 201 ? Q99MV1 692 ? 892 ? 692 892 2 1 4B9W B 1 ? 201 ? Q99MV1 692 ? 892 ? 692 892 3 2 4B9W P 1 ? 13 ? Q8CDG1 38 ? 50 ? 38 50 4 2 4B9W S 1 ? 13 ? Q8CDG1 38 ? 50 ? 38 50 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2MR 'L-peptide linking' n 'N3, N4-DIMETHYLARGININE' ? 'C8 H18 N4 O2' 202.254 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4B9W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_percent_sol 53.6 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;PROTEIN:PEPTIDE 1:5 RATIO, 0.2 M AMMONIUM ACETATE, 0.05 M SODIUM CACODYLATE PH 6.5, 30 % PEG8000, 0.01 M MAGNESIUM ACETATE TETRAHYDRATE ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-02-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.939 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.939 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4B9W _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.10 _reflns.number_obs 25755 _reflns.number_all ? _reflns.percent_possible_obs 95.5 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.28 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.20 _reflns_shell.percent_possible_all 95.8 _reflns_shell.Rmerge_I_obs 0.39 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.55 _reflns_shell.pdbx_redundancy 2.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4B9W _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 24480 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.94 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 95.49 _refine.ls_R_factor_obs 0.22262 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21949 _refine.ls_R_factor_R_free 0.28366 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1275 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.916 _refine.correlation_coeff_Fo_to_Fc_free 0.859 _refine.B_iso_mean 15.793 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] 0.08 _refine.aniso_B[1][2] 0.08 _refine.aniso_B[1][3] 0.07 _refine.aniso_B[2][3] 0.10 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.268 _refine.pdbx_overall_ESU_R_Free 0.230 _refine.overall_SU_ML 0.166 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.314 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3207 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 186 _refine_hist.number_atoms_total 3405 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 36.94 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.020 ? 3304 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 2193 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.377 1.964 ? 4492 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.861 3.000 ? 5360 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.684 5.000 ? 400 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.436 24.803 ? 152 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.557 15.000 ? 534 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.833 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.068 0.200 ? 503 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.021 ? 3660 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 672 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.154 _refine_ls_shell.number_reflns_R_work 1790 _refine_ls_shell.R_factor_R_work 0.284 _refine_ls_shell.percent_reflns_obs 94.52 _refine_ls_shell.R_factor_R_free 0.415 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2 given ? 0.999988 -0.000511 0.004916 -0.000503 -0.999998 -0.001670 0.004917 0.001667 -0.999987 -0.21223 70.61587 95.13131 # _struct.entry_id 4B9W _struct.title 'Structure of extended Tudor domain TD3 from mouse TDRD1 in complex with MILI peptide containing dimethylarginine 45.' _struct.pdbx_descriptor 'TUDOR DOMAIN-CONTAINING PROTEIN 1, PIWI-LIKE PROTEIN 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4B9W _struct_keywords.pdbx_keywords REPLICATION _struct_keywords.text REPLICATION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 40 ? GLN A 58 ? ASP A 731 GLN A 749 1 ? 19 HELX_P HELX_P2 2 THR A 110 ? ASP A 112 ? THR A 801 ASP A 803 5 ? 3 HELX_P HELX_P3 3 LEU A 118 ? LEU A 123 ? LEU A 809 LEU A 814 5 ? 6 HELX_P HELX_P4 4 THR A 144 ? VAL A 156 ? THR A 835 VAL A 847 1 ? 13 HELX_P HELX_P5 5 ILE A 187 ? GLU A 194 ? ILE A 878 GLU A 885 1 ? 8 HELX_P HELX_P6 6 ASP B 40 ? ALA B 57 ? ASP B 731 ALA B 748 1 ? 18 HELX_P HELX_P7 7 THR B 110 ? ASP B 112 ? THR B 801 ASP B 803 5 ? 3 HELX_P HELX_P8 8 LEU B 118 ? LEU B 123 ? LEU B 809 LEU B 814 5 ? 6 HELX_P HELX_P9 9 THR B 144 ? VAL B 156 ? THR B 835 VAL B 847 1 ? 13 HELX_P HELX_P10 10 ILE B 187 ? GLU B 194 ? ILE B 878 GLU B 885 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? C 2MR 8 N ? ? ? 1_555 C GLY 7 C ? ? P 2MR 45 P GLY 44 1_555 ? ? ? ? ? ? ? 1.339 ? covale2 covale both ? C 2MR 8 C ? ? ? 1_555 C GLY 9 N ? ? P 2MR 45 P GLY 46 1_555 ? ? ? ? ? ? ? 1.324 ? covale3 covale both ? D 2MR 8 C ? ? ? 1_555 D GLY 9 N ? ? S 2MR 45 S GLY 46 1_555 ? ? ? ? ? ? ? 1.323 ? covale4 covale both ? D 2MR 8 N ? ? ? 1_555 D GLY 7 C ? ? S 2MR 45 S GLY 44 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 59 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 750 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 60 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 751 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.54 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 7 ? AB ? 5 ? AC ? 2 ? BA ? 7 ? BB ? 5 ? BC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AC 1 2 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? parallel BA 3 4 ? parallel BA 4 5 ? anti-parallel BB 1 2 ? anti-parallel BB 2 3 ? anti-parallel BB 3 4 ? anti-parallel BB 4 5 ? anti-parallel BC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 18 ? SER A 28 ? THR A 709 SER A 719 AA 2 LEU A 160 ? THR A 168 ? LEU A 851 THR A 859 AA 3 GLY A 171 ? ASP A 178 ? GLY A 862 ASP A 869 AA 4 MET A 129 ? LEU A 133 ? MET A 820 LEU A 824 AA 5 GLU A 31 ? PHE A 36 ? GLU A 722 PHE A 727 AA 6 THR A 18 ? SER A 28 ? THR A 709 SER A 719 AB 1 VAL A 106 ? VAL A 109 ? VAL A 797 VAL A 800 AB 2 VAL A 96 ? PHE A 100 ? VAL A 787 PHE A 791 AB 3 TRP A 82 ? ILE A 90 ? TRP A 773 ILE A 781 AB 4 PRO A 71 ? PHE A 75 ? PRO A 762 PHE A 766 AB 5 LEU A 114 ? ALA A 116 ? LEU A 805 ALA A 807 AC 1 ILE A 136 ? GLN A 137 ? ILE A 827 GLN A 828 AC 2 LEU A 198 ? ARG A 199 ? LEU A 889 ARG A 890 BA 1 THR B 18 ? SER B 28 ? THR B 709 SER B 719 BA 2 LEU B 160 ? ILE B 167 ? LEU B 851 ILE B 858 BA 3 VAL B 172 ? ASP B 178 ? VAL B 863 ASP B 869 BA 4 MET B 129 ? LEU B 133 ? MET B 820 LEU B 824 BA 5 GLU B 31 ? PHE B 36 ? GLU B 722 PHE B 727 BA 6 THR B 18 ? SER B 28 ? THR B 709 SER B 719 BB 1 VAL B 106 ? VAL B 109 ? VAL B 797 VAL B 800 BB 2 VAL B 96 ? PHE B 100 ? VAL B 787 PHE B 791 BB 3 TRP B 82 ? ILE B 90 ? TRP B 773 ILE B 781 BB 4 PRO B 71 ? PHE B 75 ? PRO B 762 PHE B 766 BB 5 LEU B 114 ? GLN B 115 ? LEU B 805 GLN B 806 BC 1 ILE B 136 ? GLN B 137 ? ILE B 827 GLN B 828 BC 2 LEU B 198 ? ARG B 199 ? LEU B 889 ARG B 890 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 21 ? N VAL A 712 O LEU A 160 ? O LEU A 851 AA 2 3 N THR A 168 ? N THR A 859 O GLY A 171 ? O GLY A 862 AA 3 4 N VAL A 172 ? N VAL A 863 O GLN A 130 ? O GLN A 821 AA 4 5 N CYS A 131 ? N CYS A 822 O PHE A 32 ? O PHE A 723 AB 1 2 N VAL A 109 ? N VAL A 800 O VAL A 96 ? O VAL A 787 AB 2 3 N HIS A 99 ? N HIS A 790 O LEU A 86 ? O LEU A 777 AB 3 4 N ALA A 85 ? N ALA A 776 O CYS A 72 ? O CYS A 763 AB 4 5 N CYS A 73 ? N CYS A 764 O GLN A 115 ? O GLN A 806 AC 1 2 N GLN A 137 ? N GLN A 828 O LEU A 198 ? O LEU A 889 BA 1 2 N VAL B 21 ? N VAL B 712 O LEU B 160 ? O LEU B 851 BA 2 3 N VAL B 165 ? N VAL B 856 O GLY B 173 ? O GLY B 864 BA 3 4 N VAL B 172 ? N VAL B 863 O GLN B 130 ? O GLN B 821 BA 4 5 N CYS B 131 ? N CYS B 822 O PHE B 32 ? O PHE B 723 BB 1 2 N VAL B 109 ? N VAL B 800 O VAL B 96 ? O VAL B 787 BB 2 3 N HIS B 99 ? N HIS B 790 O LEU B 86 ? O LEU B 777 BB 3 4 N ALA B 85 ? N ALA B 776 O CYS B 72 ? O CYS B 763 BB 4 5 N CYS B 73 ? N CYS B 764 O GLN B 115 ? O GLN B 806 BC 1 2 N GLN B 137 ? N GLN B 828 O LEU B 198 ? O LEU B 889 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GOL B 1893' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 1893' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 VAL B 23 ? VAL B 714 . ? 1_555 ? 2 AC1 7 CYS B 24 ? CYS B 715 . ? 1_555 ? 3 AC1 7 MET B 25 ? MET B 716 . ? 1_555 ? 4 AC1 7 MET B 26 ? MET B 717 . ? 1_555 ? 5 AC1 7 GLN B 152 ? GLN B 843 . ? 1_555 ? 6 AC1 7 2MR D 8 ? 2MR S 45 . ? 1_555 ? 7 AC1 7 LEU D 10 ? LEU S 47 . ? 1_555 ? 8 AC2 5 CYS A 24 ? CYS A 715 . ? 1_555 ? 9 AC2 5 MET A 26 ? MET A 717 . ? 1_555 ? 10 AC2 5 GLN A 152 ? GLN A 843 . ? 1_555 ? 11 AC2 5 2MR C 8 ? 2MR P 45 . ? 1_555 ? 12 AC2 5 LEU C 10 ? LEU P 47 . ? 1_555 ? # _database_PDB_matrix.entry_id 4B9W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4B9W _atom_sites.fract_transf_matrix[1][1] 0.025038 _atom_sites.fract_transf_matrix[1][2] 0.009954 _atom_sites.fract_transf_matrix[1][3] 0.005105 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019943 _atom_sites.fract_transf_matrix[2][3] 0.002612 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016777 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 692 ? ? ? A . n A 1 2 PRO 2 693 ? ? ? A . n A 1 3 ALA 3 694 ? ? ? A . n A 1 4 GLU 4 695 ? ? ? A . n A 1 5 ALA 5 696 ? ? ? A . n A 1 6 LEU 6 697 697 LEU LEU A . n A 1 7 GLU 7 698 698 GLU GLU A . n A 1 8 TRP 8 699 699 TRP TRP A . n A 1 9 THR 9 700 700 THR THR A . n A 1 10 TRP 10 701 701 TRP TRP A . n A 1 11 VAL 11 702 702 VAL VAL A . n A 1 12 GLU 12 703 703 GLU GLU A . n A 1 13 PHE 13 704 704 PHE PHE A . n A 1 14 THR 14 705 705 THR THR A . n A 1 15 VAL 15 706 706 VAL VAL A . n A 1 16 ASP 16 707 707 ASP ASP A . n A 1 17 GLU 17 708 708 GLU GLU A . n A 1 18 THR 18 709 709 THR THR A . n A 1 19 VAL 19 710 710 VAL VAL A . n A 1 20 ASP 20 711 711 ASP ASP A . n A 1 21 VAL 21 712 712 VAL VAL A . n A 1 22 VAL 22 713 713 VAL VAL A . n A 1 23 VAL 23 714 714 VAL VAL A . n A 1 24 CYS 24 715 715 CYS CYS A . n A 1 25 MET 25 716 716 MET MET A . n A 1 26 MET 26 717 717 MET MET A . n A 1 27 TYR 27 718 718 TYR TYR A . n A 1 28 SER 28 719 719 SER SER A . n A 1 29 PRO 29 720 720 PRO PRO A . n A 1 30 GLY 30 721 721 GLY GLY A . n A 1 31 GLU 31 722 722 GLU GLU A . n A 1 32 PHE 32 723 723 PHE PHE A . n A 1 33 TYR 33 724 724 TYR TYR A . n A 1 34 CYS 34 725 725 CYS CYS A . n A 1 35 HIS 35 726 726 HIS HIS A . n A 1 36 PHE 36 727 727 PHE PHE A . n A 1 37 LEU 37 728 728 LEU LEU A . n A 1 38 LYS 38 729 729 LYS LYS A . n A 1 39 ASP 39 730 730 ASP ASP A . n A 1 40 ASP 40 731 731 ASP ASP A . n A 1 41 ALA 41 732 732 ALA ALA A . n A 1 42 LEU 42 733 733 LEU LEU A . n A 1 43 GLU 43 734 734 GLU GLU A . n A 1 44 LYS 44 735 735 LYS LYS A . n A 1 45 LEU 45 736 736 LEU LEU A . n A 1 46 ASP 46 737 737 ASP ASP A . n A 1 47 ASP 47 738 738 ASP ASP A . n A 1 48 LEU 48 739 739 LEU LEU A . n A 1 49 ASN 49 740 740 ASN ASN A . n A 1 50 GLN 50 741 741 GLN GLN A . n A 1 51 SER 51 742 742 SER SER A . n A 1 52 LEU 52 743 743 LEU LEU A . n A 1 53 ALA 53 744 744 ALA ALA A . n A 1 54 ASP 54 745 745 ASP ASP A . n A 1 55 TYR 55 746 746 TYR TYR A . n A 1 56 CYS 56 747 747 CYS CYS A . n A 1 57 ALA 57 748 748 ALA ALA A . n A 1 58 GLN 58 749 749 GLN GLN A . n A 1 59 LYS 59 750 750 LYS LYS A . n A 1 60 PRO 60 751 751 PRO PRO A . n A 1 61 PRO 61 752 752 PRO PRO A . n A 1 62 ASN 62 753 753 ASN ASN A . n A 1 63 GLY 63 754 754 GLY GLY A . n A 1 64 PHE 64 755 755 PHE PHE A . n A 1 65 LYS 65 756 756 LYS LYS A . n A 1 66 ALA 66 757 757 ALA ALA A . n A 1 67 GLU 67 758 758 GLU GLU A . n A 1 68 ILE 68 759 759 ILE ILE A . n A 1 69 GLY 69 760 760 GLY GLY A . n A 1 70 ARG 70 761 761 ARG ARG A . n A 1 71 PRO 71 762 762 PRO PRO A . n A 1 72 CYS 72 763 763 CYS CYS A . n A 1 73 CYS 73 764 764 CYS CYS A . n A 1 74 ALA 74 765 765 ALA ALA A . n A 1 75 PHE 75 766 766 PHE PHE A . n A 1 76 PHE 76 767 767 PHE PHE A . n A 1 77 SER 77 768 768 SER SER A . n A 1 78 GLY 78 769 769 GLY GLY A . n A 1 79 ASP 79 770 770 ASP ASP A . n A 1 80 GLY 80 771 771 GLY GLY A . n A 1 81 ASN 81 772 772 ASN ASN A . n A 1 82 TRP 82 773 773 TRP TRP A . n A 1 83 TYR 83 774 774 TYR TYR A . n A 1 84 ARG 84 775 775 ARG ARG A . n A 1 85 ALA 85 776 776 ALA ALA A . n A 1 86 LEU 86 777 777 LEU LEU A . n A 1 87 VAL 87 778 778 VAL VAL A . n A 1 88 LYS 88 779 779 LYS LYS A . n A 1 89 GLU 89 780 780 GLU GLU A . n A 1 90 ILE 90 781 781 ILE ILE A . n A 1 91 LEU 91 782 782 LEU LEU A . n A 1 92 PRO 92 783 783 PRO PRO A . n A 1 93 SER 93 784 784 SER SER A . n A 1 94 GLY 94 785 785 GLY GLY A . n A 1 95 ASN 95 786 786 ASN ASN A . n A 1 96 VAL 96 787 787 VAL VAL A . n A 1 97 LYS 97 788 788 LYS LYS A . n A 1 98 VAL 98 789 789 VAL VAL A . n A 1 99 HIS 99 790 790 HIS HIS A . n A 1 100 PHE 100 791 791 PHE PHE A . n A 1 101 VAL 101 792 792 VAL VAL A . n A 1 102 ASP 102 793 793 ASP ASP A . n A 1 103 TYR 103 794 794 TYR TYR A . n A 1 104 GLY 104 795 795 GLY GLY A . n A 1 105 ASN 105 796 796 ASN ASN A . n A 1 106 VAL 106 797 797 VAL VAL A . n A 1 107 GLU 107 798 798 GLU GLU A . n A 1 108 GLU 108 799 799 GLU GLU A . n A 1 109 VAL 109 800 800 VAL VAL A . n A 1 110 THR 110 801 801 THR THR A . n A 1 111 THR 111 802 802 THR THR A . n A 1 112 ASP 112 803 803 ASP ASP A . n A 1 113 GLN 113 804 804 GLN GLN A . n A 1 114 LEU 114 805 805 LEU LEU A . n A 1 115 GLN 115 806 806 GLN GLN A . n A 1 116 ALA 116 807 807 ALA ALA A . n A 1 117 ILE 117 808 808 ILE ILE A . n A 1 118 LEU 118 809 809 LEU LEU A . n A 1 119 PRO 119 810 810 PRO PRO A . n A 1 120 GLN 120 811 811 GLN GLN A . n A 1 121 PHE 121 812 812 PHE PHE A . n A 1 122 LEU 122 813 813 LEU LEU A . n A 1 123 LEU 123 814 814 LEU LEU A . n A 1 124 LEU 124 815 815 LEU LEU A . n A 1 125 PRO 125 816 816 PRO PRO A . n A 1 126 PHE 126 817 817 PHE PHE A . n A 1 127 GLN 127 818 818 GLN GLN A . n A 1 128 GLY 128 819 819 GLY GLY A . n A 1 129 MET 129 820 820 MET MET A . n A 1 130 GLN 130 821 821 GLN GLN A . n A 1 131 CYS 131 822 822 CYS CYS A . n A 1 132 TRP 132 823 823 TRP TRP A . n A 1 133 LEU 133 824 824 LEU LEU A . n A 1 134 VAL 134 825 825 VAL VAL A . n A 1 135 ASP 135 826 826 ASP ASP A . n A 1 136 ILE 136 827 827 ILE ILE A . n A 1 137 GLN 137 828 828 GLN GLN A . n A 1 138 PRO 138 829 829 PRO PRO A . n A 1 139 PRO 139 830 830 PRO PRO A . n A 1 140 ASN 140 831 831 ASN ASN A . n A 1 141 LYS 141 832 832 LYS LYS A . n A 1 142 HIS 142 833 833 HIS HIS A . n A 1 143 TRP 143 834 834 TRP TRP A . n A 1 144 THR 144 835 835 THR THR A . n A 1 145 LYS 145 836 836 LYS LYS A . n A 1 146 GLU 146 837 837 GLU GLU A . n A 1 147 ALA 147 838 838 ALA ALA A . n A 1 148 THR 148 839 839 THR THR A . n A 1 149 ALA 149 840 840 ALA ALA A . n A 1 150 ARG 150 841 841 ARG ARG A . n A 1 151 PHE 151 842 842 PHE PHE A . n A 1 152 GLN 152 843 843 GLN GLN A . n A 1 153 ALA 153 844 844 ALA ALA A . n A 1 154 CYS 154 845 845 CYS CYS A . n A 1 155 VAL 155 846 846 VAL VAL A . n A 1 156 VAL 156 847 847 VAL VAL A . n A 1 157 GLY 157 848 848 GLY GLY A . n A 1 158 LEU 158 849 849 LEU LEU A . n A 1 159 LYS 159 850 850 LYS LYS A . n A 1 160 LEU 160 851 851 LEU LEU A . n A 1 161 GLN 161 852 852 GLN GLN A . n A 1 162 ALA 162 853 853 ALA ALA A . n A 1 163 ARG 163 854 854 ARG ARG A . n A 1 164 VAL 164 855 855 VAL VAL A . n A 1 165 VAL 165 856 856 VAL VAL A . n A 1 166 GLU 166 857 857 GLU GLU A . n A 1 167 ILE 167 858 858 ILE ILE A . n A 1 168 THR 168 859 859 THR THR A . n A 1 169 ALA 169 860 860 ALA ALA A . n A 1 170 ASN 170 861 861 ASN ASN A . n A 1 171 GLY 171 862 862 GLY GLY A . n A 1 172 VAL 172 863 863 VAL VAL A . n A 1 173 GLY 173 864 864 GLY GLY A . n A 1 174 VAL 174 865 865 VAL VAL A . n A 1 175 GLU 175 866 866 GLU GLU A . n A 1 176 LEU 176 867 867 LEU LEU A . n A 1 177 THR 177 868 868 THR THR A . n A 1 178 ASP 178 869 869 ASP ASP A . n A 1 179 LEU 179 870 870 LEU LEU A . n A 1 180 SER 180 871 871 SER SER A . n A 1 181 THR 181 872 872 THR THR A . n A 1 182 PRO 182 873 873 PRO PRO A . n A 1 183 TYR 183 874 874 TYR TYR A . n A 1 184 PRO 184 875 875 PRO PRO A . n A 1 185 LYS 185 876 876 LYS LYS A . n A 1 186 ILE 186 877 877 ILE ILE A . n A 1 187 ILE 187 878 878 ILE ILE A . n A 1 188 SER 188 879 879 SER SER A . n A 1 189 ASP 189 880 880 ASP ASP A . n A 1 190 VAL 190 881 881 VAL VAL A . n A 1 191 LEU 191 882 882 LEU LEU A . n A 1 192 ILE 192 883 883 ILE ILE A . n A 1 193 ARG 193 884 884 ARG ARG A . n A 1 194 GLU 194 885 885 GLU GLU A . n A 1 195 GLN 195 886 886 GLN GLN A . n A 1 196 LEU 196 887 887 LEU LEU A . n A 1 197 VAL 197 888 888 VAL VAL A . n A 1 198 LEU 198 889 889 LEU LEU A . n A 1 199 ARG 199 890 890 ARG ARG A . n A 1 200 CYS 200 891 891 CYS CYS A . n A 1 201 GLY 201 892 892 GLY GLY A . n B 1 1 GLY 1 692 ? ? ? B . n B 1 2 PRO 2 693 ? ? ? B . n B 1 3 ALA 3 694 ? ? ? B . n B 1 4 GLU 4 695 ? ? ? B . n B 1 5 ALA 5 696 ? ? ? B . n B 1 6 LEU 6 697 697 LEU LEU B . n B 1 7 GLU 7 698 698 GLU GLU B . n B 1 8 TRP 8 699 699 TRP TRP B . n B 1 9 THR 9 700 700 THR THR B . n B 1 10 TRP 10 701 701 TRP TRP B . n B 1 11 VAL 11 702 702 VAL VAL B . n B 1 12 GLU 12 703 703 GLU GLU B . n B 1 13 PHE 13 704 704 PHE PHE B . n B 1 14 THR 14 705 705 THR THR B . n B 1 15 VAL 15 706 706 VAL VAL B . n B 1 16 ASP 16 707 707 ASP ASP B . n B 1 17 GLU 17 708 708 GLU GLU B . n B 1 18 THR 18 709 709 THR THR B . n B 1 19 VAL 19 710 710 VAL VAL B . n B 1 20 ASP 20 711 711 ASP ASP B . n B 1 21 VAL 21 712 712 VAL VAL B . n B 1 22 VAL 22 713 713 VAL VAL B . n B 1 23 VAL 23 714 714 VAL VAL B . n B 1 24 CYS 24 715 715 CYS CYS B . n B 1 25 MET 25 716 716 MET MET B . n B 1 26 MET 26 717 717 MET MET B . n B 1 27 TYR 27 718 718 TYR TYR B . n B 1 28 SER 28 719 719 SER SER B . n B 1 29 PRO 29 720 720 PRO PRO B . n B 1 30 GLY 30 721 721 GLY GLY B . n B 1 31 GLU 31 722 722 GLU GLU B . n B 1 32 PHE 32 723 723 PHE PHE B . n B 1 33 TYR 33 724 724 TYR TYR B . n B 1 34 CYS 34 725 725 CYS CYS B . n B 1 35 HIS 35 726 726 HIS HIS B . n B 1 36 PHE 36 727 727 PHE PHE B . n B 1 37 LEU 37 728 728 LEU LEU B . n B 1 38 LYS 38 729 729 LYS LYS B . n B 1 39 ASP 39 730 730 ASP ASP B . n B 1 40 ASP 40 731 731 ASP ASP B . n B 1 41 ALA 41 732 732 ALA ALA B . n B 1 42 LEU 42 733 733 LEU LEU B . n B 1 43 GLU 43 734 734 GLU GLU B . n B 1 44 LYS 44 735 735 LYS LYS B . n B 1 45 LEU 45 736 736 LEU LEU B . n B 1 46 ASP 46 737 737 ASP ASP B . n B 1 47 ASP 47 738 738 ASP ASP B . n B 1 48 LEU 48 739 739 LEU LEU B . n B 1 49 ASN 49 740 740 ASN ASN B . n B 1 50 GLN 50 741 741 GLN GLN B . n B 1 51 SER 51 742 742 SER SER B . n B 1 52 LEU 52 743 743 LEU LEU B . n B 1 53 ALA 53 744 744 ALA ALA B . n B 1 54 ASP 54 745 745 ASP ASP B . n B 1 55 TYR 55 746 746 TYR TYR B . n B 1 56 CYS 56 747 747 CYS CYS B . n B 1 57 ALA 57 748 748 ALA ALA B . n B 1 58 GLN 58 749 749 GLN GLN B . n B 1 59 LYS 59 750 ? ? ? B . n B 1 60 PRO 60 751 ? ? ? B . n B 1 61 PRO 61 752 ? ? ? B . n B 1 62 ASN 62 753 ? ? ? B . n B 1 63 GLY 63 754 ? ? ? B . n B 1 64 PHE 64 755 755 PHE PHE B . n B 1 65 LYS 65 756 756 LYS LYS B . n B 1 66 ALA 66 757 757 ALA ALA B . n B 1 67 GLU 67 758 758 GLU GLU B . n B 1 68 ILE 68 759 759 ILE ILE B . n B 1 69 GLY 69 760 760 GLY GLY B . n B 1 70 ARG 70 761 761 ARG ARG B . n B 1 71 PRO 71 762 762 PRO PRO B . n B 1 72 CYS 72 763 763 CYS CYS B . n B 1 73 CYS 73 764 764 CYS CYS B . n B 1 74 ALA 74 765 765 ALA ALA B . n B 1 75 PHE 75 766 766 PHE PHE B . n B 1 76 PHE 76 767 767 PHE PHE B . n B 1 77 SER 77 768 768 SER SER B . n B 1 78 GLY 78 769 769 GLY GLY B . n B 1 79 ASP 79 770 770 ASP ASP B . n B 1 80 GLY 80 771 771 GLY GLY B . n B 1 81 ASN 81 772 772 ASN ASN B . n B 1 82 TRP 82 773 773 TRP TRP B . n B 1 83 TYR 83 774 774 TYR TYR B . n B 1 84 ARG 84 775 775 ARG ARG B . n B 1 85 ALA 85 776 776 ALA ALA B . n B 1 86 LEU 86 777 777 LEU LEU B . n B 1 87 VAL 87 778 778 VAL VAL B . n B 1 88 LYS 88 779 779 LYS LYS B . n B 1 89 GLU 89 780 780 GLU GLU B . n B 1 90 ILE 90 781 781 ILE ILE B . n B 1 91 LEU 91 782 782 LEU LEU B . n B 1 92 PRO 92 783 783 PRO PRO B . n B 1 93 SER 93 784 784 SER SER B . n B 1 94 GLY 94 785 785 GLY GLY B . n B 1 95 ASN 95 786 786 ASN ASN B . n B 1 96 VAL 96 787 787 VAL VAL B . n B 1 97 LYS 97 788 788 LYS LYS B . n B 1 98 VAL 98 789 789 VAL VAL B . n B 1 99 HIS 99 790 790 HIS HIS B . n B 1 100 PHE 100 791 791 PHE PHE B . n B 1 101 VAL 101 792 792 VAL VAL B . n B 1 102 ASP 102 793 793 ASP ASP B . n B 1 103 TYR 103 794 794 TYR TYR B . n B 1 104 GLY 104 795 795 GLY GLY B . n B 1 105 ASN 105 796 796 ASN ASN B . n B 1 106 VAL 106 797 797 VAL VAL B . n B 1 107 GLU 107 798 798 GLU GLU B . n B 1 108 GLU 108 799 799 GLU GLU B . n B 1 109 VAL 109 800 800 VAL VAL B . n B 1 110 THR 110 801 801 THR THR B . n B 1 111 THR 111 802 802 THR THR B . n B 1 112 ASP 112 803 803 ASP ASP B . n B 1 113 GLN 113 804 804 GLN GLN B . n B 1 114 LEU 114 805 805 LEU LEU B . n B 1 115 GLN 115 806 806 GLN GLN B . n B 1 116 ALA 116 807 807 ALA ALA B . n B 1 117 ILE 117 808 808 ILE ILE B . n B 1 118 LEU 118 809 809 LEU LEU B . n B 1 119 PRO 119 810 810 PRO PRO B . n B 1 120 GLN 120 811 811 GLN GLN B . n B 1 121 PHE 121 812 812 PHE PHE B . n B 1 122 LEU 122 813 813 LEU LEU B . n B 1 123 LEU 123 814 814 LEU LEU B . n B 1 124 LEU 124 815 815 LEU LEU B . n B 1 125 PRO 125 816 816 PRO PRO B . n B 1 126 PHE 126 817 817 PHE PHE B . n B 1 127 GLN 127 818 818 GLN GLN B . n B 1 128 GLY 128 819 819 GLY GLY B . n B 1 129 MET 129 820 820 MET MET B . n B 1 130 GLN 130 821 821 GLN GLN B . n B 1 131 CYS 131 822 822 CYS CYS B . n B 1 132 TRP 132 823 823 TRP TRP B . n B 1 133 LEU 133 824 824 LEU LEU B . n B 1 134 VAL 134 825 825 VAL VAL B . n B 1 135 ASP 135 826 826 ASP ASP B . n B 1 136 ILE 136 827 827 ILE ILE B . n B 1 137 GLN 137 828 828 GLN GLN B . n B 1 138 PRO 138 829 829 PRO PRO B . n B 1 139 PRO 139 830 830 PRO PRO B . n B 1 140 ASN 140 831 831 ASN ASN B . n B 1 141 LYS 141 832 832 LYS LYS B . n B 1 142 HIS 142 833 833 HIS HIS B . n B 1 143 TRP 143 834 834 TRP TRP B . n B 1 144 THR 144 835 835 THR THR B . n B 1 145 LYS 145 836 836 LYS LYS B . n B 1 146 GLU 146 837 837 GLU GLU B . n B 1 147 ALA 147 838 838 ALA ALA B . n B 1 148 THR 148 839 839 THR THR B . n B 1 149 ALA 149 840 840 ALA ALA B . n B 1 150 ARG 150 841 841 ARG ARG B . n B 1 151 PHE 151 842 842 PHE PHE B . n B 1 152 GLN 152 843 843 GLN GLN B . n B 1 153 ALA 153 844 844 ALA ALA B . n B 1 154 CYS 154 845 845 CYS CYS B . n B 1 155 VAL 155 846 846 VAL VAL B . n B 1 156 VAL 156 847 847 VAL VAL B . n B 1 157 GLY 157 848 848 GLY GLY B . n B 1 158 LEU 158 849 849 LEU LEU B . n B 1 159 LYS 159 850 850 LYS LYS B . n B 1 160 LEU 160 851 851 LEU LEU B . n B 1 161 GLN 161 852 852 GLN GLN B . n B 1 162 ALA 162 853 853 ALA ALA B . n B 1 163 ARG 163 854 854 ARG ARG B . n B 1 164 VAL 164 855 855 VAL VAL B . n B 1 165 VAL 165 856 856 VAL VAL B . n B 1 166 GLU 166 857 857 GLU GLU B . n B 1 167 ILE 167 858 858 ILE ILE B . n B 1 168 THR 168 859 859 THR THR B . n B 1 169 ALA 169 860 860 ALA ALA B . n B 1 170 ASN 170 861 861 ASN ASN B . n B 1 171 GLY 171 862 862 GLY GLY B . n B 1 172 VAL 172 863 863 VAL VAL B . n B 1 173 GLY 173 864 864 GLY GLY B . n B 1 174 VAL 174 865 865 VAL VAL B . n B 1 175 GLU 175 866 866 GLU GLU B . n B 1 176 LEU 176 867 867 LEU LEU B . n B 1 177 THR 177 868 868 THR THR B . n B 1 178 ASP 178 869 869 ASP ASP B . n B 1 179 LEU 179 870 870 LEU LEU B . n B 1 180 SER 180 871 871 SER SER B . n B 1 181 THR 181 872 872 THR THR B . n B 1 182 PRO 182 873 873 PRO PRO B . n B 1 183 TYR 183 874 874 TYR TYR B . n B 1 184 PRO 184 875 875 PRO PRO B . n B 1 185 LYS 185 876 876 LYS LYS B . n B 1 186 ILE 186 877 877 ILE ILE B . n B 1 187 ILE 187 878 878 ILE ILE B . n B 1 188 SER 188 879 879 SER SER B . n B 1 189 ASP 189 880 880 ASP ASP B . n B 1 190 VAL 190 881 881 VAL VAL B . n B 1 191 LEU 191 882 882 LEU LEU B . n B 1 192 ILE 192 883 883 ILE ILE B . n B 1 193 ARG 193 884 884 ARG ARG B . n B 1 194 GLU 194 885 885 GLU GLU B . n B 1 195 GLN 195 886 886 GLN GLN B . n B 1 196 LEU 196 887 887 LEU LEU B . n B 1 197 VAL 197 888 888 VAL VAL B . n B 1 198 LEU 198 889 889 LEU LEU B . n B 1 199 ARG 199 890 890 ARG ARG B . n B 1 200 CYS 200 891 891 CYS CYS B . n B 1 201 GLY 201 892 892 GLY GLY B . n C 2 1 GLY 1 38 ? ? ? P . n C 2 2 ARG 2 39 ? ? ? P . n C 2 3 ALA 3 40 ? ? ? P . n C 2 4 GLY 4 41 ? ? ? P . n C 2 5 PRO 5 42 ? ? ? P . n C 2 6 ALA 6 43 43 ALA ALA P . n C 2 7 GLY 7 44 44 GLY GLY P . n C 2 8 2MR 8 45 45 2MR 2MR P . n C 2 9 GLY 9 46 46 GLY GLY P . n C 2 10 LEU 10 47 47 LEU LEU P . n C 2 11 VAL 11 48 48 VAL VAL P . n C 2 12 PHE 12 49 49 PHE PHE P . n C 2 13 ARG 13 50 50 ARG ARG P . n D 2 1 GLY 1 38 ? ? ? S . n D 2 2 ARG 2 39 ? ? ? S . n D 2 3 ALA 3 40 ? ? ? S . n D 2 4 GLY 4 41 ? ? ? S . n D 2 5 PRO 5 42 ? ? ? S . n D 2 6 ALA 6 43 43 ALA ALA S . n D 2 7 GLY 7 44 44 GLY GLY S . n D 2 8 2MR 8 45 45 2MR 2MR S . n D 2 9 GLY 9 46 46 GLY GLY S . n D 2 10 LEU 10 47 47 LEU LEU S . n D 2 11 VAL 11 48 48 VAL VAL S . n D 2 12 PHE 12 49 49 PHE PHE S . n D 2 13 ARG 13 50 50 ARG ARG S . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL 1 1893 1893 GOL GOL A . F 3 GOL 1 1893 1893 GOL GOL B . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . G 4 HOH 7 2007 2007 HOH HOH A . G 4 HOH 8 2008 2008 HOH HOH A . G 4 HOH 9 2009 2009 HOH HOH A . G 4 HOH 10 2010 2010 HOH HOH A . G 4 HOH 11 2011 2011 HOH HOH A . G 4 HOH 12 2012 2012 HOH HOH A . G 4 HOH 13 2013 2013 HOH HOH A . G 4 HOH 14 2014 2014 HOH HOH A . G 4 HOH 15 2015 2015 HOH HOH A . G 4 HOH 16 2016 2016 HOH HOH A . G 4 HOH 17 2017 2017 HOH HOH A . G 4 HOH 18 2018 2018 HOH HOH A . G 4 HOH 19 2019 2019 HOH HOH A . G 4 HOH 20 2020 2020 HOH HOH A . G 4 HOH 21 2021 2021 HOH HOH A . G 4 HOH 22 2022 2022 HOH HOH A . G 4 HOH 23 2023 2023 HOH HOH A . G 4 HOH 24 2024 2024 HOH HOH A . G 4 HOH 25 2025 2025 HOH HOH A . G 4 HOH 26 2026 2026 HOH HOH A . G 4 HOH 27 2027 2027 HOH HOH A . G 4 HOH 28 2028 2028 HOH HOH A . G 4 HOH 29 2029 2029 HOH HOH A . G 4 HOH 30 2030 2030 HOH HOH A . G 4 HOH 31 2031 2031 HOH HOH A . G 4 HOH 32 2032 2032 HOH HOH A . G 4 HOH 33 2033 2033 HOH HOH A . G 4 HOH 34 2034 2034 HOH HOH A . G 4 HOH 35 2035 2035 HOH HOH A . G 4 HOH 36 2036 2036 HOH HOH A . G 4 HOH 37 2037 2037 HOH HOH A . G 4 HOH 38 2038 2038 HOH HOH A . G 4 HOH 39 2039 2039 HOH HOH A . G 4 HOH 40 2040 2040 HOH HOH A . G 4 HOH 41 2041 2041 HOH HOH A . G 4 HOH 42 2042 2042 HOH HOH A . G 4 HOH 43 2043 2043 HOH HOH A . G 4 HOH 44 2044 2044 HOH HOH A . G 4 HOH 45 2045 2045 HOH HOH A . G 4 HOH 46 2046 2046 HOH HOH A . G 4 HOH 47 2047 2047 HOH HOH A . G 4 HOH 48 2048 2048 HOH HOH A . G 4 HOH 49 2049 2049 HOH HOH A . G 4 HOH 50 2050 2050 HOH HOH A . G 4 HOH 51 2051 2051 HOH HOH A . G 4 HOH 52 2052 2052 HOH HOH A . G 4 HOH 53 2053 2053 HOH HOH A . G 4 HOH 54 2054 2054 HOH HOH A . G 4 HOH 55 2055 2055 HOH HOH A . G 4 HOH 56 2056 2056 HOH HOH A . G 4 HOH 57 2057 2057 HOH HOH A . G 4 HOH 58 2058 2058 HOH HOH A . G 4 HOH 59 2059 2059 HOH HOH A . G 4 HOH 60 2060 2060 HOH HOH A . G 4 HOH 61 2061 2061 HOH HOH A . G 4 HOH 62 2062 2062 HOH HOH A . G 4 HOH 63 2063 2063 HOH HOH A . G 4 HOH 64 2064 2064 HOH HOH A . G 4 HOH 65 2065 2065 HOH HOH A . G 4 HOH 66 2066 2066 HOH HOH A . G 4 HOH 67 2067 2067 HOH HOH A . G 4 HOH 68 2068 2068 HOH HOH A . G 4 HOH 69 2069 2069 HOH HOH A . G 4 HOH 70 2070 2070 HOH HOH A . G 4 HOH 71 2071 2071 HOH HOH A . G 4 HOH 72 2072 2072 HOH HOH A . G 4 HOH 73 2073 2073 HOH HOH A . G 4 HOH 74 2074 2074 HOH HOH A . G 4 HOH 75 2075 2075 HOH HOH A . G 4 HOH 76 2076 2076 HOH HOH A . G 4 HOH 77 2077 2077 HOH HOH A . G 4 HOH 78 2078 2078 HOH HOH A . G 4 HOH 79 2079 2079 HOH HOH A . G 4 HOH 80 2080 2080 HOH HOH A . G 4 HOH 81 2081 2081 HOH HOH A . G 4 HOH 82 2082 2082 HOH HOH A . G 4 HOH 83 2083 2083 HOH HOH A . G 4 HOH 84 2084 2084 HOH HOH A . G 4 HOH 85 2085 2085 HOH HOH A . G 4 HOH 86 2086 2086 HOH HOH A . G 4 HOH 87 2087 2087 HOH HOH A . G 4 HOH 88 2088 2088 HOH HOH A . G 4 HOH 89 2089 2089 HOH HOH A . G 4 HOH 90 2090 2090 HOH HOH A . G 4 HOH 91 2091 2091 HOH HOH A . H 4 HOH 1 2001 2001 HOH HOH B . H 4 HOH 2 2002 2002 HOH HOH B . H 4 HOH 3 2003 2003 HOH HOH B . H 4 HOH 4 2004 2004 HOH HOH B . H 4 HOH 5 2005 2005 HOH HOH B . H 4 HOH 6 2006 2006 HOH HOH B . H 4 HOH 7 2007 2007 HOH HOH B . H 4 HOH 8 2008 2008 HOH HOH B . H 4 HOH 9 2009 2009 HOH HOH B . H 4 HOH 10 2010 2010 HOH HOH B . H 4 HOH 11 2011 2011 HOH HOH B . H 4 HOH 12 2012 2012 HOH HOH B . H 4 HOH 13 2013 2013 HOH HOH B . H 4 HOH 14 2014 2014 HOH HOH B . H 4 HOH 15 2015 2015 HOH HOH B . H 4 HOH 16 2016 2016 HOH HOH B . H 4 HOH 17 2017 2017 HOH HOH B . H 4 HOH 18 2018 2018 HOH HOH B . H 4 HOH 19 2019 2019 HOH HOH B . H 4 HOH 20 2020 2020 HOH HOH B . H 4 HOH 21 2021 2021 HOH HOH B . H 4 HOH 22 2022 2022 HOH HOH B . H 4 HOH 23 2023 2023 HOH HOH B . H 4 HOH 24 2024 2024 HOH HOH B . H 4 HOH 25 2025 2025 HOH HOH B . H 4 HOH 26 2026 2026 HOH HOH B . H 4 HOH 27 2027 2027 HOH HOH B . H 4 HOH 28 2028 2028 HOH HOH B . H 4 HOH 29 2029 2029 HOH HOH B . H 4 HOH 30 2030 2030 HOH HOH B . H 4 HOH 31 2031 2031 HOH HOH B . H 4 HOH 32 2032 2032 HOH HOH B . H 4 HOH 33 2033 2033 HOH HOH B . H 4 HOH 34 2034 2034 HOH HOH B . H 4 HOH 35 2035 2035 HOH HOH B . H 4 HOH 36 2036 2036 HOH HOH B . H 4 HOH 37 2037 2037 HOH HOH B . H 4 HOH 38 2038 2038 HOH HOH B . H 4 HOH 39 2039 2039 HOH HOH B . H 4 HOH 40 2040 2040 HOH HOH B . H 4 HOH 41 2041 2041 HOH HOH B . H 4 HOH 42 2042 2042 HOH HOH B . H 4 HOH 43 2043 2043 HOH HOH B . H 4 HOH 44 2044 2044 HOH HOH B . H 4 HOH 45 2045 2045 HOH HOH B . H 4 HOH 46 2046 2046 HOH HOH B . H 4 HOH 47 2047 2047 HOH HOH B . H 4 HOH 48 2048 2048 HOH HOH B . H 4 HOH 49 2049 2049 HOH HOH B . H 4 HOH 50 2050 2050 HOH HOH B . H 4 HOH 51 2051 2051 HOH HOH B . H 4 HOH 52 2052 2052 HOH HOH B . H 4 HOH 53 2053 2053 HOH HOH B . H 4 HOH 54 2054 2054 HOH HOH B . H 4 HOH 55 2055 2055 HOH HOH B . H 4 HOH 56 2056 2056 HOH HOH B . H 4 HOH 57 2057 2057 HOH HOH B . H 4 HOH 58 2058 2058 HOH HOH B . H 4 HOH 59 2059 2059 HOH HOH B . H 4 HOH 60 2060 2060 HOH HOH B . H 4 HOH 61 2061 2061 HOH HOH B . H 4 HOH 62 2062 2062 HOH HOH B . H 4 HOH 63 2063 2063 HOH HOH B . H 4 HOH 64 2064 2064 HOH HOH B . H 4 HOH 65 2065 2065 HOH HOH B . H 4 HOH 66 2066 2066 HOH HOH B . H 4 HOH 67 2067 2067 HOH HOH B . H 4 HOH 68 2068 2068 HOH HOH B . H 4 HOH 69 2069 2069 HOH HOH B . H 4 HOH 70 2070 2070 HOH HOH B . H 4 HOH 71 2071 2071 HOH HOH B . H 4 HOH 72 2072 2072 HOH HOH B . H 4 HOH 73 2073 2073 HOH HOH B . H 4 HOH 74 2074 2074 HOH HOH B . H 4 HOH 75 2075 2075 HOH HOH B . H 4 HOH 76 2076 2076 HOH HOH B . H 4 HOH 77 2077 2077 HOH HOH B . H 4 HOH 78 2078 2078 HOH HOH B . H 4 HOH 79 2079 2079 HOH HOH B . H 4 HOH 80 2080 2080 HOH HOH B . H 4 HOH 81 2081 2081 HOH HOH B . H 4 HOH 82 2082 2082 HOH HOH B . H 4 HOH 83 2083 2083 HOH HOH B . H 4 HOH 84 2084 2084 HOH HOH B . H 4 HOH 85 2085 2085 HOH HOH B . H 4 HOH 86 2086 2086 HOH HOH B . H 4 HOH 87 2087 2087 HOH HOH B . H 4 HOH 88 2088 2088 HOH HOH B . I 4 HOH 1 2001 2001 HOH HOH P . I 4 HOH 2 2002 2002 HOH HOH P . I 4 HOH 3 2003 2003 HOH HOH P . J 4 HOH 1 2001 2001 HOH HOH S . J 4 HOH 2 2002 2002 HOH HOH S . J 4 HOH 3 2003 2003 HOH HOH S . J 4 HOH 4 2004 2004 HOH HOH S . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C 2MR 8 P 2MR 45 ? ARG 'N3, N4-DIMETHYLARGININE' 2 D 2MR 8 S 2MR 45 ? ARG 'N3, N4-DIMETHYLARGININE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4640 ? 1 MORE -26.1 ? 1 'SSA (A^2)' 19930 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-17 2 'Structure model' 1 1 2012-10-31 3 'Structure model' 1 2 2019-04-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Experimental preparation' 6 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' exptl_crystal_grow 3 3 'Structure model' pdbx_database_proc 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' struct_biol 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_abbrev' 2 3 'Structure model' '_citation.journal_id_ISSN' 3 3 'Structure model' '_citation.page_last' 4 3 'Structure model' '_citation.pdbx_database_id_DOI' 5 3 'Structure model' '_citation.title' 6 3 'Structure model' '_exptl_crystal_grow.method' 7 3 'Structure model' '_exptl_crystal_grow.temp' 8 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 9 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 3 'Structure model' '_struct_ref.db_code' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language XDS 'data reduction' . ? 1 ? ? ? ? XSCALE 'data scaling' . ? 2 ? ? ? ? SHARP phasing . ? 3 ? ? ? ? RESOLVE phasing . ? 4 ? ? ? ? REFMAC refinement 5.6.0116 ? 5 ? ? ? ? # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 4B9W _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details 'GLYCEROL (GOL): FROM CRYOPROTECTANT' _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 A GLU 722 ? ? O A HOH 2021 ? ? 2.08 2 1 O A HOH 2009 ? ? O A HOH 2035 ? ? 2.12 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 841 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 841 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 841 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.70 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.40 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 722 ? ? -160.58 93.23 2 1 TYR A 794 ? ? -137.90 -37.93 3 1 ASN A 831 ? ? -102.04 -124.91 4 1 GLU B 722 ? ? -163.49 97.85 5 1 TYR B 794 ? ? -134.32 -37.06 6 1 ASN B 831 ? ? -103.75 -109.36 7 1 ARG B 890 ? ? -48.05 151.79 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 692 ? A GLY 1 2 1 Y 1 A PRO 693 ? A PRO 2 3 1 Y 1 A ALA 694 ? A ALA 3 4 1 Y 1 A GLU 695 ? A GLU 4 5 1 Y 1 A ALA 696 ? A ALA 5 6 1 Y 1 B GLY 692 ? B GLY 1 7 1 Y 1 B PRO 693 ? B PRO 2 8 1 Y 1 B ALA 694 ? B ALA 3 9 1 Y 1 B GLU 695 ? B GLU 4 10 1 Y 1 B ALA 696 ? B ALA 5 11 1 Y 1 B LYS 750 ? B LYS 59 12 1 Y 1 B PRO 751 ? B PRO 60 13 1 Y 1 B PRO 752 ? B PRO 61 14 1 Y 1 B ASN 753 ? B ASN 62 15 1 Y 1 B GLY 754 ? B GLY 63 16 1 Y 1 P GLY 38 ? C GLY 1 17 1 Y 1 P ARG 39 ? C ARG 2 18 1 Y 1 P ALA 40 ? C ALA 3 19 1 Y 1 P GLY 41 ? C GLY 4 20 1 Y 1 P PRO 42 ? C PRO 5 21 1 Y 1 S GLY 38 ? D GLY 1 22 1 Y 1 S ARG 39 ? D ARG 2 23 1 Y 1 S ALA 40 ? D ALA 3 24 1 Y 1 S GLY 41 ? D GLY 4 25 1 Y 1 S PRO 42 ? D PRO 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH #