HEADER HYDROLASE 09-SEP-12 4B9Z TITLE CRYSTAL STRUCTURE OF AGD31B, ALPHA-TRANSGLUCOSYLASE, COMPLEXED WITH TITLE 2 ACARBOSE CAVEAT 4B9Z GLC B 1 HAS WRONG CHIRALITY AT ATOM C1 GLC B 1 HAS WRONG CAVEAT 2 4B9Z CHIRALITY AT ATOM C3 GLC B 1 HAS WRONG CHIRALITY AT ATOM C4 CAVEAT 3 4B9Z GLC B 2 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE, PUTATIVE, ADG31B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-TRANSGLUCOSYLASE; COMPND 5 EC: 3.2.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO JAPONICUS; SOURCE 3 ORGANISM_TAXID: 155077; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PENTR/SD/D-TOPO KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LARSBRINK,A.IZUMI,G.R.HEMSWORTH,G.J.DAVIES,H.BRUMER REVDAT 5 20-DEC-23 4B9Z 1 REMARK HETSYN REVDAT 4 29-JUL-20 4B9Z 1 CAVEAT COMPND REMARK HET REVDAT 4 2 1 HETNAM HETSYN FORMUL LINK REVDAT 4 3 1 SITE ATOM REVDAT 3 16-JAN-13 4B9Z 1 JRNL REVDAT 2 21-NOV-12 4B9Z 1 JRNL REVDAT 1 14-NOV-12 4B9Z 0 JRNL AUTH J.LARSBRINK,A.IZUMI,G.R.HEMSWORTH,G.J.DAVIES,H.BRUMER JRNL TITL STRUCTURAL ENZYMOLOGY OF CELLVIBRIO JAPONICUS AGD31B REVEALS JRNL TITL 2 ALPHA-TRANSGLUCOSYLASE ACTIVITY IN GLYCOSIDE HYDROLASE JRNL TITL 3 FAMILY 31 JRNL REF J.BIOL.CHEM. V. 287 43288 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 23132856 JRNL DOI 10.1074/JBC.M112.416511 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 79078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7497 - 6.0696 1.00 2958 147 0.1931 0.2185 REMARK 3 2 6.0696 - 4.8189 1.00 2772 150 0.1473 0.1758 REMARK 3 3 4.8189 - 4.2102 1.00 2736 165 0.1263 0.1360 REMARK 3 4 4.2102 - 3.8254 1.00 2724 141 0.1258 0.1555 REMARK 3 5 3.8254 - 3.5513 1.00 2716 136 0.1444 0.1452 REMARK 3 6 3.5513 - 3.3419 1.00 2723 133 0.1623 0.1835 REMARK 3 7 3.3419 - 3.1746 1.00 2695 134 0.1773 0.2018 REMARK 3 8 3.1746 - 3.0364 1.00 2699 126 0.1846 0.2089 REMARK 3 9 3.0364 - 2.9196 1.00 2681 153 0.1909 0.2084 REMARK 3 10 2.9196 - 2.8188 1.00 2651 169 0.1815 0.1983 REMARK 3 11 2.8188 - 2.7307 1.00 2658 151 0.1778 0.2088 REMARK 3 12 2.7307 - 2.6526 1.00 2661 149 0.1680 0.2219 REMARK 3 13 2.6526 - 2.5828 1.00 2669 137 0.1639 0.1808 REMARK 3 14 2.5828 - 2.5198 1.00 2667 144 0.1617 0.1973 REMARK 3 15 2.5198 - 2.4625 1.00 2663 136 0.1598 0.1896 REMARK 3 16 2.4625 - 2.4101 1.00 2652 155 0.1584 0.1763 REMARK 3 17 2.4101 - 2.3619 1.00 2628 150 0.1597 0.2267 REMARK 3 18 2.3619 - 2.3173 1.00 2661 141 0.1581 0.2190 REMARK 3 19 2.3173 - 2.2759 1.00 2656 142 0.1595 0.1836 REMARK 3 20 2.2759 - 2.2374 1.00 2667 119 0.1529 0.2099 REMARK 3 21 2.2374 - 2.2013 1.00 2628 158 0.1556 0.1862 REMARK 3 22 2.2013 - 2.1674 1.00 2674 131 0.1582 0.1844 REMARK 3 23 2.1674 - 2.1355 1.00 2627 134 0.1571 0.2297 REMARK 3 24 2.1355 - 2.1055 1.00 2661 139 0.1575 0.1913 REMARK 3 25 2.1055 - 2.0770 1.00 2653 129 0.1558 0.1745 REMARK 3 26 2.0770 - 2.0500 1.00 2645 136 0.1618 0.2097 REMARK 3 27 2.0500 - 2.0244 1.00 2628 152 0.1760 0.2161 REMARK 3 28 2.0244 - 2.0000 1.00 2651 117 0.1830 0.2280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 36.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.22530 REMARK 3 B22 (A**2) : -3.22530 REMARK 3 B33 (A**2) : 6.45050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6545 REMARK 3 ANGLE : 1.094 8853 REMARK 3 CHIRALITY : 0.078 935 REMARK 3 PLANARITY : 0.005 1141 REMARK 3 DIHEDRAL : 13.909 2419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 35:104) REMARK 3 ORIGIN FOR THE GROUP (A): 64.1416 14.8218 -2.6425 REMARK 3 T TENSOR REMARK 3 T11: 0.4458 T22: 0.3948 REMARK 3 T33: 0.3301 T12: 0.0252 REMARK 3 T13: -0.0812 T23: -0.1908 REMARK 3 L TENSOR REMARK 3 L11: 0.8175 L22: 0.7313 REMARK 3 L33: 3.1528 L12: 0.1392 REMARK 3 L13: -0.0344 L23: 0.6532 REMARK 3 S TENSOR REMARK 3 S11: -0.1162 S12: 0.3716 S13: -0.1634 REMARK 3 S21: -0.4718 S22: -0.0568 S23: 0.2103 REMARK 3 S31: 0.0880 S32: -0.5342 S33: 0.3157 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 105:156) REMARK 3 ORIGIN FOR THE GROUP (A): 75.7678 22.4403 -3.0920 REMARK 3 T TENSOR REMARK 3 T11: 0.4942 T22: 0.3055 REMARK 3 T33: 0.2538 T12: 0.0657 REMARK 3 T13: 0.0293 T23: -0.1318 REMARK 3 L TENSOR REMARK 3 L11: 1.3767 L22: 1.4027 REMARK 3 L33: 2.6041 L12: 0.4449 REMARK 3 L13: 0.2174 L23: 1.5328 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: 0.3164 S13: -0.1103 REMARK 3 S21: -0.5997 S22: -0.0388 S23: 0.0665 REMARK 3 S31: -0.2398 S32: -0.1279 S33: 0.0942 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 157:584) REMARK 3 ORIGIN FOR THE GROUP (A): 76.6663 18.5847 30.7409 REMARK 3 T TENSOR REMARK 3 T11: 0.1762 T22: 0.1098 REMARK 3 T33: 0.1963 T12: 0.0116 REMARK 3 T13: 0.0782 T23: -0.1664 REMARK 3 L TENSOR REMARK 3 L11: 0.2495 L22: 0.4831 REMARK 3 L33: 0.4351 L12: -0.0680 REMARK 3 L13: 0.0286 L23: 0.0132 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.1016 S13: -0.0901 REMARK 3 S21: -0.1404 S22: -0.0306 S23: 0.0013 REMARK 3 S31: 0.1153 S32: 0.0186 S33: -0.0135 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 585:743) REMARK 3 ORIGIN FOR THE GROUP (A): 72.1449 45.2885 27.6820 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.1570 REMARK 3 T33: 0.1818 T12: -0.0002 REMARK 3 T13: 0.0528 T23: -0.0891 REMARK 3 L TENSOR REMARK 3 L11: 0.6850 L22: 1.0420 REMARK 3 L33: 0.5236 L12: -0.3761 REMARK 3 L13: -0.0914 L23: -0.0833 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: 0.1295 S13: -0.0024 REMARK 3 S21: -0.1877 S22: -0.0588 S23: -0.0638 REMARK 3 S31: 0.0161 S32: -0.0193 S33: 0.0396 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 744:817) REMARK 3 ORIGIN FOR THE GROUP (A): 60.3413 58.7514 36.4046 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.1559 REMARK 3 T33: 0.2464 T12: 0.0389 REMARK 3 T13: -0.0021 T23: -0.0637 REMARK 3 L TENSOR REMARK 3 L11: 2.1963 L22: 2.3707 REMARK 3 L33: 1.2833 L12: 0.5097 REMARK 3 L13: -0.5016 L23: -0.2814 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: -0.0266 S13: 0.3121 REMARK 3 S21: 0.1046 S22: -0.0159 S23: 0.2095 REMARK 3 S31: -0.2060 S32: -0.0919 S33: -0.0309 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B9Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290054019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79078 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 51.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.50 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4B9Y REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.1 M HEPES REMARK 280 (PH7.0), 2% PEG400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 ILE A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 PHE A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 ILE A 11 REMARK 465 PHE A 12 REMARK 465 LEU A 13 REMARK 465 MET A 14 REMARK 465 LEU A 15 REMARK 465 PHE A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 MET A 23 REMARK 465 GLY A 24 REMARK 465 ASN A 25 REMARK 465 PRO A 26 REMARK 465 VAL A 27 REMARK 465 LYS A 28 REMARK 465 ARG A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 HIS A 32 REMARK 465 PRO A 33 REMARK 465 ASP A 34 REMARK 465 ASN A 138 REMARK 465 THR A 139 REMARK 465 ASP A 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 ARG A 44 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 141 CG CD CE NZ REMARK 470 LYS A 217 NZ REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 LYS A 388 CG CD CE NZ REMARK 470 ARG A 392 CD NE CZ NH1 NH2 REMARK 470 GLN A 447 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 45 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 737 OD1 ASN A 812 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 45 119.23 -179.48 REMARK 500 ASP A 46 32.92 -91.29 REMARK 500 ALA A 89 104.16 -161.86 REMARK 500 ASP A 124 -120.59 64.94 REMARK 500 GLU A 132 -100.45 -93.77 REMARK 500 LEU A 162 -6.19 -141.61 REMARK 500 SER A 182 -89.19 -131.92 REMARK 500 SER A 182 -86.20 -133.93 REMARK 500 GLN A 187 116.93 -160.34 REMARK 500 SER A 229 -163.73 -170.11 REMARK 500 ASP A 299 -168.07 -79.92 REMARK 500 HIS A 419 79.84 -152.24 REMARK 500 ASP A 515 -137.91 58.12 REMARK 500 LYS A 712 -21.92 -140.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B9Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO AGD31B, ALPHA-TRANSGLUCOSYLASE IN REMARK 900 GLYCOSIDE HYDROLASE FAMILY 31 REMARK 900 RELATED ID: 4BA0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AGD31B, ALPHA-TRANSGLUCOSYLASE, COMPLEXED WITH REMARK 900 5F-ALPHA-GLCF REMARK 999 REMARK 999 SEQUENCE REMARK 999 K817 IS DERIVED FROM THE EXPRESSION VECTOR. DBREF 4B9Z A 1 816 UNP B3PEE6 B3PEE6_CELJU 1 816 SEQADV 4B9Z LYS A 817 UNP B3PEE6 EXPRESSION TAG SEQRES 1 A 817 MET PHE ARG ARG ILE ALA GLY PHE SER PRO ILE PHE LEU SEQRES 2 A 817 MET LEU PHE GLY SER SER LEU PRO THR MET GLY ASN PRO SEQRES 3 A 817 VAL LYS ARG GLU ILE HIS PRO ASP ALA VAL PHE TYR LYS SEQRES 4 A 817 GLU HIS LYS LEU ARG ASN ASP GLY LEU VAL ILE THR THR SEQRES 5 A 817 ASN GLN GLY ASN ILE ARG LEU GLN PHE LYS SER GLU ALA SEQRES 6 A 817 ALA ILE GLU VAL LEU TYR ARG ALA ASP SER LYS GLN LEU SEQRES 7 A 817 PRO SER PHE ALA LEU ALA GLN PRO GLU SER ALA ILE LYS SEQRES 8 A 817 ALA GLN LEU THR GLU THR GLU ASN HIS LEU GLN PHE SER SEQRES 9 A 817 GLY GLY THR LEU THR ALA ARG ILE GLN LYS ARG PRO PHE SEQRES 10 A 817 ALA ILE SER TYR TYR ARG ASP SER GLU LEU LEU LEU ALA SEQRES 11 A 817 GLU GLU SER GLY PHE GLN VAL ASN THR ASP LYS ILE ASN SEQRES 12 A 817 PHE ARG PHE TYR LEU SER PRO GLY GLU LYS ILE LEU GLY SEQRES 13 A 817 GLY GLY GLN ARG ILE LEU GLY MET ASP ARG ARG GLY GLN SEQRES 14 A 817 ARG PHE PRO LEU TYR ASN ARG ALA HIS TYR GLY TYR SER SEQRES 15 A 817 ASP HIS SER GLY GLN MET TYR PHE GLY LEU PRO ALA ILE SEQRES 16 A 817 MET SER SER LYS GLN TYR ILE LEU VAL PHE ASP ASN SER SEQRES 17 A 817 ALA SER GLY ALA MET ASP ILE GLY LYS THR GLU SER ASP SEQRES 18 A 817 ILE LEU GLN LEU GLU ALA LYS SER GLY ARG SER ALA TYR SEQRES 19 A 817 ILE LEU VAL ALA GLY ASN SER TYR PRO SER LEU ILE GLU SEQRES 20 A 817 ASN PHE THR GLN VAL THR GLY ARG GLN PRO LEU PRO PRO SEQRES 21 A 817 ARG TRP ALA LEU GLY SER PHE ALA SER ARG PHE GLY TYR SEQRES 22 A 817 ARG SER GLU ALA GLU THR ARG ALA THR VAL GLN LYS TYR SEQRES 23 A 817 LYS THR GLU ASP PHE PRO LEU ASP THR ILE VAL LEU ASP SEQRES 24 A 817 LEU TYR TRP PHE GLY LYS ASP ILE LYS GLY HIS MET GLY SEQRES 25 A 817 ASN LEU ASP TRP ASP LYS GLU ASN PHE PRO THR PRO LEU SEQRES 26 A 817 ASP MET MET ALA ASP PHE LYS GLN GLN GLY VAL LYS THR SEQRES 27 A 817 VAL LEU ILE THR GLU PRO PHE VAL LEU THR SER SER LYS SEQRES 28 A 817 ARG TRP ASP ASP ALA VAL LYS ALA LYS ALA LEU ALA LYS SEQRES 29 A 817 ASP PRO GLN GLY GLN PRO LYS ALA PHE GLU LEU TYR PHE SEQRES 30 A 817 GLY ASN GLY GLY ILE ILE ASP VAL PHE SER LYS GLU GLY SEQRES 31 A 817 SER ARG TRP PHE SER SER ILE TYR LYS ASP LEU SER LYS SEQRES 32 A 817 GLN GLY VAL ALA GLY TRP TRP GLY ASP LEU GLY GLU PRO SEQRES 33 A 817 GLU MET HIS PRO GLU ASP THR GLN HIS ALA ILE GLY ASP SEQRES 34 A 817 ALA ASP THR VAL HIS ASN ALA TYR GLY HIS ARG TRP ALA SEQRES 35 A 817 GLU MET LEU TYR GLN GLN GLN LEU ASP GLN PHE PRO GLU SEQRES 36 A 817 LEU ARG PRO PHE ILE MET MET ARG ALA GLY PHE VAL GLY SEQRES 37 A 817 SER GLN ARG TYR GLY MET ILE PRO TRP THR GLY ASP VAL SEQRES 38 A 817 SER ARG THR TRP GLY GLY LEU ALA SER GLN VAL GLU LEU SEQRES 39 A 817 ALA LEU GLN MET SER LEU LEU GLY PHE GLY TYR ILE HIS SEQRES 40 A 817 SER ASP LEU GLY GLY PHE ALA ASP GLY GLU THR LEU ASP SEQRES 41 A 817 LYS GLU MET TYR ILE ARG TRP LEU GLN TYR GLY VAL PHE SEQRES 42 A 817 GLN PRO VAL TYR ARG PRO HIS GLY GLN ASP HIS ILE PRO SEQRES 43 A 817 SER GLU PRO VAL PHE GLN ASP GLU GLU THR LYS ALA ILE SEQRES 44 A 817 LEU ARG PRO LEU VAL LYS LEU ARG TYR ARG MET LEU PRO SEQRES 45 A 817 TYR ILE TYR THR ALA ALA TYR GLN ASN THR LEU THR GLY SEQRES 46 A 817 MET PRO LEU MET ARG PRO LEU PHE PHE SER ASP GLU LYS SEQRES 47 A 817 ASN PRO ALA LEU ILE ASP ASN LYS THR SER TYR PHE TRP SEQRES 48 A 817 GLY ASP SER LEU LEU VAL THR PRO ILE THR GLN ALA GLY SEQRES 49 A 817 VAL GLU SER VAL SER ILE PRO ALA PRO LYS GLY VAL TRP SEQRES 50 A 817 PHE ASP PHE TRP LYS ASP THR ARG TYR GLN THR ASP GLY SEQRES 51 A 817 ALA PRO LEU THR LEU PRO THR ASP LEU HIS THR ILE PRO SEQRES 52 A 817 VAL LEU VAL LYS ALA GLY ALA PHE MET PRO TYR VAL PRO SEQRES 53 A 817 ALA VAL SER THR THR GLU ASP TYR ARG SER ASP SER LEU SEQRES 54 A 817 GLU ILE HIS TYR TYR ALA ASP ALA SER VAL PRO LEU ALA SEQRES 55 A 817 GLN GLY GLU ILE PHE GLU ASP ASP GLY LYS ASP PRO ASN SEQRES 56 A 817 SER ILE LYS ARG ASN GLN PHE ASP LEU LEU THR LEU GLN SEQRES 57 A 817 ALA THR HIS THR ASP ASN GLN LEU HIS PHE GLN LEU ALA SEQRES 58 A 817 ARG THR GLY LYS GLY TYR ARG GLY MET PRO GLU ARG ARG SEQRES 59 A 817 ALA THR THR LEU VAL ILE HIS ASN ALA SER ASP GLN TYR SEQRES 60 A 817 GLN HIS LEU ASP ILE ASN GLY LYS THR ILE ALA ILE ALA SEQRES 61 A 817 GLN ALA ASP CYS ALA SER THR PRO ALA LEU ALA CYS TYR SEQRES 62 A 817 ASP GLN GLU ARG ARG GLN LEU GLN LEU VAL PHE THR TRP SEQRES 63 A 817 GLY ARG GLU ALA LEU ASN LEU ARG LEU HIS LYS HET GLC B 1 12 HET GLC B 2 11 HET AC1 B 3 21 HET SO4 A1819 5 HET SO4 A1820 5 HET SO4 A1821 5 HET SO4 A1822 5 HET SO4 A1823 5 HET OXL A1824 6 HET PEG A1825 7 HET EDO A1826 4 HET EDO A1827 4 HET EDO A1828 4 HET EDO A1829 4 HET EDO A1830 4 HET EDO A1831 4 HET EDO A1832 4 HET EDO A1833 4 HET EDO A1834 4 HET EDO A1835 4 HET EDO A1836 4 HET EDO A1837 4 HET EDO A1838 4 HET EDO A1839 4 HET EDO A1840 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM AC1 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETNAM 2 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETNAM 3 AC1 GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM OXL OXALATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN AC1 6-METHYL-5-(4,5,6-TRIHYDROXY-3-HYDROXYMETHYL-CYCLOHEX- HETSYN 2 AC1 2-ENYLAMINO)-TETRAHYDRO-PYRAN-2,3,4-TRIOL; 4,6- HETSYN 3 AC1 DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETSYN 4 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETSYN 5 AC1 GLUCOSE; 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6- HETSYN 6 AC1 TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}- HETSYN 7 AC1 D-GLUCOSE; 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6- HETSYN 8 AC1 TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}- HETSYN 9 AC1 GLUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GLC 2(C6 H12 O6) FORMUL 2 AC1 C13 H23 N O8 FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 OXL C2 O4 2- FORMUL 9 PEG C4 H10 O3 FORMUL 10 EDO 15(C2 H6 O2) FORMUL 25 HOH *444(H2 O) HELIX 1 1 SER A 241 GLY A 254 1 14 HELIX 2 2 PRO A 260 GLY A 265 5 6 HELIX 3 3 SER A 275 ASP A 290 1 16 HELIX 4 4 ASP A 299 PHE A 303 5 5 HELIX 5 5 THR A 323 GLN A 334 1 12 HELIX 6 6 ARG A 352 ALA A 359 1 8 HELIX 7 7 SER A 387 GLY A 405 1 19 HELIX 8 8 ALA A 430 HIS A 434 1 5 HELIX 9 9 ALA A 436 PHE A 453 1 18 HELIX 10 10 GLY A 468 TYR A 472 5 5 HELIX 11 11 THR A 484 SER A 490 1 7 HELIX 12 12 SER A 490 LEU A 501 1 12 HELIX 13 13 ASP A 520 PHE A 533 1 14 HELIX 14 14 GLU A 548 GLN A 552 5 5 HELIX 15 15 ASP A 553 MET A 570 1 18 HELIX 16 16 MET A 570 GLY A 585 1 16 HELIX 17 17 PHE A 593 ASP A 596 5 4 HELIX 18 18 ASN A 599 ASN A 605 5 7 HELIX 19 19 THR A 680 TYR A 684 5 5 SHEET 1 AA 8 TYR A 38 LEU A 43 0 SHEET 2 AA 8 LEU A 48 THR A 52 -1 O VAL A 49 N LYS A 42 SHEET 3 AA 8 ASN A 56 SER A 63 -1 O ILE A 57 N ILE A 50 SHEET 4 AA 8 ALA A 66 LEU A 70 -1 O ALA A 66 N LYS A 62 SHEET 5 AA 8 ALA A 233 ALA A 238 -1 O TYR A 234 N VAL A 69 SHEET 6 AA 8 TYR A 201 PHE A 205 -1 O ILE A 202 N VAL A 237 SHEET 7 AA 8 GLY A 191 SER A 197 -1 O PRO A 193 N PHE A 205 SHEET 8 AA 8 ILE A 154 GLY A 158 -1 O LEU A 155 N MET A 196 SHEET 1 AB 9 GLN A 93 GLU A 96 0 SHEET 2 AB 9 HIS A 100 SER A 104 -1 O GLN A 102 N THR A 95 SHEET 3 AB 9 LEU A 108 GLN A 113 -1 O ALA A 110 N PHE A 103 SHEET 4 AB 9 ALA A 118 ARG A 123 -1 O ALA A 118 N GLN A 113 SHEET 5 AB 9 GLU A 126 GLN A 136 -1 O GLU A 126 N ARG A 123 SHEET 6 AB 9 ILE A 142 TYR A 147 -1 O ASN A 143 N GLN A 136 SHEET 7 AB 9 ILE A 222 ALA A 227 -1 O LEU A 223 N PHE A 146 SHEET 8 AB 9 GLY A 211 ILE A 215 -1 O ALA A 212 N GLU A 226 SHEET 9 AB 9 GLN A 169 LEU A 173 -1 O GLN A 169 N ILE A 215 SHEET 1 AC 6 PHE A 267 ALA A 268 0 SHEET 2 AC 6 THR A 295 LEU A 298 1 O THR A 295 N ALA A 268 SHEET 3 AC 6 LYS A 337 THR A 342 1 O LYS A 337 N ILE A 296 SHEET 4 AC 6 GLY A 408 GLY A 411 1 O GLY A 408 N LEU A 340 SHEET 5 AC 6 ILE A 460 MET A 462 1 O MET A 461 N GLY A 411 SHEET 6 AC 6 MET A 474 PRO A 476 1 O ILE A 475 N MET A 462 SHEET 1 AD 3 PHE A 345 LEU A 347 0 SHEET 2 AD 3 GLY A 378 ILE A 382 -1 O GLY A 381 N VAL A 346 SHEET 3 AD 3 PHE A 373 LEU A 375 -1 O PHE A 373 N GLY A 380 SHEET 1 AE 2 GLN A 424 HIS A 425 0 SHEET 2 AE 2 GLY A 428 ASP A 429 -1 O GLY A 428 N HIS A 425 SHEET 1 AF 6 MET A 589 PRO A 591 0 SHEET 2 AF 6 TYR A 609 TRP A 611 -1 O PHE A 610 N ARG A 590 SHEET 3 AF 6 LEU A 615 VAL A 617 -1 O LEU A 615 N TRP A 611 SHEET 4 AF 6 VAL A 664 LYS A 667 -1 O LEU A 665 N LEU A 616 SHEET 5 AF 6 GLY A 635 ASP A 639 -1 O PHE A 638 N VAL A 666 SHEET 6 AF 6 ARG A 645 THR A 648 -1 O TYR A 646 N TRP A 637 SHEET 1 AG 2 SER A 627 ILE A 630 0 SHEET 2 AG 2 LEU A 653 PRO A 656 -1 O LEU A 653 N ILE A 630 SHEET 1 AH 5 PHE A 671 TYR A 674 0 SHEET 2 AH 5 SER A 688 TYR A 694 -1 O GLU A 690 N TYR A 674 SHEET 3 AH 5 ARG A 754 HIS A 761 1 O ALA A 755 N LEU A 689 SHEET 4 AH 5 GLN A 799 TRP A 806 -1 O LEU A 800 N ILE A 760 SHEET 5 AH 5 ALA A 791 ASP A 794 -1 O CYS A 792 N GLN A 801 SHEET 1 AI 6 LEU A 701 GLU A 708 0 SHEET 2 AI 6 ASP A 723 HIS A 731 -1 O ASP A 723 N GLU A 708 SHEET 3 AI 6 GLN A 735 THR A 743 -1 O HIS A 737 N THR A 730 SHEET 4 AI 6 LEU A 811 HIS A 816 -1 O LEU A 811 N LEU A 740 SHEET 5 AI 6 HIS A 769 ILE A 772 -1 O HIS A 769 N HIS A 816 SHEET 6 AI 6 LYS A 775 ALA A 778 -1 O LYS A 775 N ILE A 772 SSBOND 1 CYS A 784 CYS A 792 1555 1555 2.05 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.42 LINK O4 GLC B 2 C1 AC1 B 3 1555 1555 1.43 CISPEP 1 ARG A 44 ASN A 45 0 2.11 CISPEP 2 ASN A 45 ASP A 46 0 3.84 CISPEP 3 ARG A 115 PRO A 116 0 -6.60 CISPEP 4 PHE A 271 GLY A 272 0 0.15 CISPEP 5 GLU A 415 PRO A 416 0 -10.36 CRYST1 196.880 196.880 102.760 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005079 0.002932 0.000000 0.00000 SCALE2 0.000000 0.005865 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009731 0.00000