HEADER HYDROLASE 13-SEP-12 4BAD TITLE HEN EGG-WHITE LYSOZYME STRUCTURE IN COMPLEX WITH THE EUROPIUM TRIS- TITLE 2 HYDROXYMETHYLTRIAZOLEDIPICOLINATE COMPLEX AT 1.35 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV, GAL D 4, COMPND 5 HEWL, MURAMIDASE, MUCOPEPTIDE N-ACETYLMURAMOYL-HYDROLASE; COMPND 6 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKENS, BANTAM; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 ORGAN: EGG; SOURCE 6 OTHER_DETAILS: ROCHE APPLIED SCIENCE POWDER, CATALOG NUMBER SOURCE 7 10837059001 KEYWDS HYDROLASE, CLICK-CHEMISTRY, ANOMALOUS SCATTERING, DE NOVO PHASING, KEYWDS 2 EXPERIMENTAL PHASING, LANTHANIDE COMPLEX, DIPICOLINATE EXPDTA X-RAY DIFFRACTION AUTHOR R.TALON,R.KAHN,A.GAUTIER,L.NAUTON,E.GIRARD REVDAT 5 23-OCT-24 4BAD 1 REMARK LINK REVDAT 4 06-MAR-19 4BAD 1 REMARK REVDAT 3 25-MAR-15 4BAD 1 JRNL REVDAT 2 28-NOV-12 4BAD 1 JRNL REVDAT 1 14-NOV-12 4BAD 0 JRNL AUTH R.TALON,L.NAUTON,J.CANET,R.KAHN,E.GIRARD,A.GAUTIER JRNL TITL CLICKED EUROPIUM DIPICOLINATE COMPLEXES FOR PROTEIN X-RAY JRNL TITL 2 STRUCTURE DETERMINATION. JRNL REF CHEM.COMMUN.(CAMB.) V. 48 11886 2012 JRNL REFN ISSN 1359-7345 JRNL PMID 23123834 JRNL DOI 10.1039/C2CC36982F REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.POMPIDOR,A.D'ALEO,J.VICAT,L.TOUPET,N.GIRAUD,R.KAHN,O.MAURY REMARK 1 TITL PROTEIN CRYSTALLOGRAPHY THROUGH SUPRAMOLECULAR INTERACTIONS REMARK 1 TITL 2 BETWEEN A LANTHANIDE COMPLEX AND ARGININE. REMARK 1 REF ANGEW.CHEM.INT.ED.ENGL. V. 47 3388 2008 REMARK 1 REFN ISSN 1433-7851 REMARK 1 PMID 18350532 REMARK 1 DOI 10.1002/ANIE.200704683 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.POMPIDOR,O.MAURY,J.VICAT,R.KAHN REMARK 1 TITL A DIPICOLINATE LANTHANIDE COMPLEX FOR SOLVING PROTEIN REMARK 1 TITL 2 STRUCTURES USING ANOMALOUS DIFFRACTION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 66 762 2010 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 20606256 REMARK 1 DOI 10.1107/S0907444910010954 REMARK 1 REFERENCE 3 REMARK 1 AUTH E.GIRARD,L.CHANTALAT,J.VICAT,R.KAHN REMARK 1 TITL GD-HPDO3A, A COMPLEX TO OBTAIN HIGH-PHASING-POWER HEAVY-ATOM REMARK 1 TITL 2 DERIVATIVES FOR SAD AND MAD EXPERIMENTS: RESULTS WITH REMARK 1 TITL 3 TETRAGONAL HEN EGG-WHITE LYSOZYME. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 1 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11752774 REMARK 1 DOI 10.1107/S0907444901016444 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 26140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.7748 - 2.8051 0.98 2906 141 0.1627 0.1808 REMARK 3 2 2.8051 - 2.2277 1.00 2820 141 0.1485 0.1469 REMARK 3 3 2.2277 - 1.9464 1.00 2766 152 0.1412 0.1630 REMARK 3 4 1.9464 - 1.7686 1.00 2751 155 0.1379 0.1810 REMARK 3 5 1.7686 - 1.6419 1.00 2755 132 0.1409 0.1667 REMARK 3 6 1.6419 - 1.5452 1.00 2713 148 0.1387 0.1872 REMARK 3 7 1.5452 - 1.4678 1.00 2714 159 0.1467 0.1638 REMARK 3 8 1.4678 - 1.4039 1.00 2701 162 0.1617 0.1975 REMARK 3 9 1.4039 - 1.3499 0.99 2685 139 0.1892 0.2039 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 44.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25380 REMARK 3 B22 (A**2) : -0.25380 REMARK 3 B33 (A**2) : 0.50760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1210 REMARK 3 ANGLE : 1.815 1649 REMARK 3 CHIRALITY : 0.114 160 REMARK 3 PLANARITY : 0.009 221 REMARK 3 DIHEDRAL : 29.458 492 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 37.7944 18.6379 9.7564 REMARK 3 T TENSOR REMARK 3 T11: 0.0290 T22: 0.0488 REMARK 3 T33: 0.0451 T12: 0.0017 REMARK 3 T13: 0.0046 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.0043 L22: 1.6716 REMARK 3 L33: 1.1052 L12: 0.2291 REMARK 3 L13: 0.1876 L23: -0.0086 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.0248 S13: 0.0252 REMARK 3 S21: -0.0559 S22: -0.0181 S23: 0.0296 REMARK 3 S31: -0.0174 S32: -0.0307 S33: 0.0168 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ACCORDING TO THE HIGH RESOLUTION, REMARK 3 ANISOTROPIC ADP REFINEMENT WAS APPLIED FOR ALL ATOMS. LIGANDS REMARK 3 OCCUPANCIES WERE FIXED ACCORDING TO THE LANTHANIDE ION OCCUPANCY REMARK 4 REMARK 4 4BAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290053412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.886 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ BI-MORPH REMARK 200 MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAUNARY 30 2009 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26192 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 19.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 0.4-1.5 M REMARK 280 SODIUM CHLORIDE, 0.00025 M PROTEIN, 0.0027 M LANTHANIDE COMPLEX, REMARK 280 293 K, 3-7 DAYS REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.23650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.70150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.70150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.85475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.70150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.70150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.61825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.70150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.70150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.85475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.70150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.70150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.61825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.23650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2027 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2068 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2100 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2148 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2070 O HOH A 2071 1.99 REMARK 500 O2 HM6 A 1131 O HOH A 2012 2.12 REMARK 500 O HOH A 2025 O HOH A 2026 2.16 REMARK 500 O HOH A 2093 O HOH A 2156 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2070 O HOH A 2070 8665 1.68 REMARK 500 O HOH A 2064 O HOH A 2099 8665 2.00 REMARK 500 O HOH A 2051 O HOH A 2076 6455 2.05 REMARK 500 O HOH A 2063 O HOH A 2099 8665 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 18 CB ASP A 18 CG 0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 18 CB - CG - OD1 ANGL. DEV. = 9.5 DEGREES REMARK 500 ASP A 18 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 18 CB - CG - OD2 ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 112 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2051 DISTANCE = 6.42 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EU3 A1141 EU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HM6 A1130 O1 REMARK 620 2 HM6 A1130 N1 65.5 REMARK 620 3 HM6 A1130 O3 128.3 62.8 REMARK 620 4 HM6 A1131 O1 81.1 72.1 81.6 REMARK 620 5 HM6 A1131 N1 132.9 121.8 76.5 61.9 REMARK 620 6 HM6 A1131 O3 144.4 139.4 82.7 125.8 64.0 REMARK 620 7 HM6 A1144 O3 71.4 131.4 150.3 80.3 74.3 89.1 REMARK 620 8 HM6 A1144 N1 68.5 115.8 139.0 138.9 122.2 76.2 64.5 REMARK 620 9 HM6 A1144 O1 91.4 75.5 78.0 146.9 135.5 77.1 127.8 63.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EU3 A1143 EU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HM6 A1142 O3 REMARK 620 2 HM6 A1142 N1 62.7 REMARK 620 3 HM6 A1142 O1 127.6 64.8 REMARK 620 4 HM6 A1144 O5 91.3 78.3 77.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HM6 A 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HM6 A 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1138 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1139 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1140 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EU3 A 1141 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HM6 A 1142 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EU3 A 1143 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HM6 A 1144 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE PROVIDED CORRESPOND TO THE RESIDUES 19 TO 147, REMARK 999 I.E WITHOUT THE DELETED SIGNAL PEPTIDE DBREF 4BAD A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET HM6 A1130 19 HET HM6 A1131 19 HET ACT A1132 4 HET CL A1133 1 HET CL A1134 1 HET CL A1135 1 HET CL A1136 1 HET CL A1137 1 HET CL A1138 1 HET NA A1139 1 HET NA A1140 1 HET EU3 A1141 1 HET HM6 A1142 19 HET EU3 A1143 1 HET HM6 A1144 19 HETNAM HM6 4-(4-(HYDROXYMETHYL)-1H-1,2,3-TRIAZOL-1-YL)PYRIDINE-2, HETNAM 2 HM6 6-DICARBOXYLIC ACID HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM EU3 EUROPIUM (III) ION HETSYN HM6 HYDROXYMETHYLTRIAZOLE DIPICOLINIC ACID FORMUL 2 HM6 4(C10 H8 N4 O5) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 CL 6(CL 1-) FORMUL 11 NA 2(NA 1+) FORMUL 13 EU3 2(EU 3+) FORMUL 17 HOH *159(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 SER A 24 ASN A 37 1 14 HELIX 3 3 CYS A 80 SER A 85 5 6 HELIX 4 4 ILE A 88 SER A 100 1 13 HELIX 5 5 ASN A 103 ALA A 107 5 5 HELIX 6 6 TRP A 108 CYS A 115 1 8 HELIX 7 7 ASP A 119 ARG A 125 5 7 SHEET 1 AA 3 THR A 43 ARG A 45 0 SHEET 2 AA 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.06 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.07 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.05 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.06 LINK O1 HM6 A1130 EU EU3 A1141 1555 1555 2.62 LINK N1 HM6 A1130 EU EU3 A1141 1555 1555 2.54 LINK O3 HM6 A1130 EU EU3 A1141 1555 1555 2.79 LINK O1 HM6 A1131 EU EU3 A1141 1555 1555 2.50 LINK N1 HM6 A1131 EU EU3 A1141 1555 1555 2.54 LINK O3 HM6 A1131 EU EU3 A1141 1555 1555 2.48 LINK CL CL A1135 NA NA A1139 1555 1555 3.15 LINK EU EU3 A1141 O3 HM6 A1144 1555 1555 2.52 LINK EU EU3 A1141 N1 HM6 A1144 1555 1555 2.54 LINK EU EU3 A1141 O1 HM6 A1144 1555 1555 2.54 LINK O3 HM6 A1142 EU EU3 A1143 1555 1555 2.60 LINK N1 HM6 A1142 EU EU3 A1143 1555 1555 2.57 LINK O1 HM6 A1142 EU EU3 A1143 1555 1555 2.27 LINK EU EU3 A1143 O5 HM6 A1144 1556 1555 2.65 SITE 1 AC1 11 LYS A 33 PHE A 38 ASP A 101 TRP A 123 SITE 2 AC1 11 HM6 A1131 EU3 A1141 HM6 A1144 HOH A2011 SITE 3 AC1 11 HOH A2150 HOH A2151 HOH A2152 SITE 1 AC2 10 GLY A 4 ARG A 5 ARG A 73 LEU A 75 SITE 2 AC2 10 HM6 A1130 CL A1137 EU3 A1141 HM6 A1144 SITE 3 AC2 10 HOH A2012 HOH A2154 SITE 1 AC3 7 GLN A 57 ILE A 58 ASN A 59 TRP A 63 SITE 2 AC3 7 ALA A 107 TRP A 108 HOH A2089 SITE 1 AC4 2 TYR A 23 ASN A 113 SITE 1 AC5 5 SER A 24 GLY A 26 GLN A 121 NA A1140 SITE 2 AC5 5 HOH A2043 SITE 1 AC6 3 ASN A 65 PRO A 79 NA A1139 SITE 1 AC7 4 ASN A 65 GLY A 67 ARG A 68 THR A 69 SITE 1 AC8 6 GLY A 4 CYS A 6 GLU A 7 HM6 A1131 SITE 2 AC8 6 HOH A2012 HOH A2024 SITE 1 AC9 4 ALA A 42 ARG A 68 HOH A2057 HOH A2061 SITE 1 BC1 4 ASN A 74 ILE A 78 PRO A 79 CL A1135 SITE 1 BC2 2 ILE A 124 CL A1134 SITE 1 BC3 3 HM6 A1130 HM6 A1131 HM6 A1144 SITE 1 BC4 8 ASN A 103 ASN A 106 ALA A 107 ARG A 112 SITE 2 BC4 8 ARG A 125 EU3 A1143 HM6 A1144 HOH A2156 SITE 1 BC5 3 HM6 A1142 HM6 A1144 HOH A2156 SITE 1 BC6 13 TRP A 62 TRP A 63 LEU A 75 ARG A 125 SITE 2 BC6 13 HM6 A1130 HM6 A1131 EU3 A1141 HM6 A1142 SITE 3 BC6 13 EU3 A1143 HOH A2089 HOH A2157 HOH A2158 SITE 4 BC6 13 HOH A2159 CRYST1 77.403 77.403 38.473 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025992 0.00000