HEADER PLANT PROTEIN 14-SEP-12 4BAL TITLE THAUMATIN FROM THAUMATOCOCCUS DANIELLII STRUCTURE IN COMPLEX WITH THE TITLE 2 EUROPIUM TRIS-HYDROXYMETHYLTRIAZOLEDIPICOLINATE COMPLEX AT 1.30 A TITLE 3 RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: THAUMATIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THAUMATIN I, TDTHAU SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THAUMATOCOCCUS DANIELLII; SOURCE 3 ORGANISM_COMMON: KATEMFE, MIRACLE FRUIT; SOURCE 4 ORGANISM_TAXID: 4621; SOURCE 5 OTHER_DETAILS: SIGMA-ALDRICH POWDER, CATALOG REFERENCE T7638 KEYWDS PLANT PROTEIN, CLICK-CHEMISTRY, ANOMALOUS SCATTERING, DE NOVO KEYWDS 2 PHASING, EXPERIMENTAL PHASING, DIPICOLINATE EXPDTA X-RAY DIFFRACTION AUTHOR R.TALON,R.KAHN,A.GAUTIER,L.NAUTON,E.GIRARD REVDAT 5 20-DEC-23 4BAL 1 REMARK REVDAT 4 06-MAR-19 4BAL 1 REMARK REVDAT 3 01-APR-15 4BAL 1 JRNL REVDAT 2 28-NOV-12 4BAL 1 JRNL REVDAT 1 14-NOV-12 4BAL 0 JRNL AUTH R.TALON,L.NAUTON,J.-L.CANET,R.KAHN,E.GIRARD,A.GAUTIER JRNL TITL CLICKED EUROPIUM DIPICOLINATE COMPLEXES FOR PROTEIN X-RAY JRNL TITL 2 STRUCTURE DETERMINATION. JRNL REF CHEM.COMMUN.(CAMB.) V. 48 11886 2012 JRNL REFN ISSN 1359-7345 JRNL PMID 23123834 JRNL DOI 10.1039/C2CC36982F REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.POMPIDOR,A.D'ALEO,J.VICAT,L.TOUPET,N.GIRAUD,R.KAHN,O.MAURY REMARK 1 TITL PROTEIN CRYSTALLOGRAPHY THROUGH SUPRAMOLECULAR INTERACTIONS REMARK 1 TITL 2 BETWEEN A LANTHANIDE COMPLEX AND ARGININE. REMARK 1 REF ANGEW.CHEM.INT.ED.ENGL. V. 47 3388 2008 REMARK 1 REFN ISSN 1433-7851 REMARK 1 PMID 18350532 REMARK 1 DOI 10.1002/ANIE.200704683 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.POMPIDOR,O.MAURY,J.VICAT,R.KAHN REMARK 1 TITL A DIPICOLINATE LANTHANIDE COMPLEX FOR SOLVING PROTEIN REMARK 1 TITL 2 STRUCTURES USING ANOMALOUS DIFFRACTION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 66 762 2010 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 20606256 REMARK 1 DOI 10.1107/S0907444910010954 REMARK 1 REFERENCE 3 REMARK 1 AUTH E.GIRARD,L.CHANTALAT,J.VICAT,R.KAHN REMARK 1 TITL GD-HPDO3A, A COMPLEX TO OBTAIN HIGH-PHASING-POWER HEAVY-ATOM REMARK 1 TITL 2 DERIVATIVES FOR SAD AND MAD EXPERIMENTS: RESULTS WITH REMARK 1 TITL 3 TETRAGONAL HEN EGG-WHITE LYSOZYME. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 1 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11752774 REMARK 1 DOI 10.1107/S0907444901016444 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 64138 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0012 - 3.6897 0.99 2918 154 0.1699 0.1839 REMARK 3 2 3.6897 - 2.9295 1.00 2749 144 0.1519 0.1610 REMARK 3 3 2.9295 - 2.5595 1.00 2719 144 0.1525 0.1835 REMARK 3 4 2.5595 - 2.3256 1.00 2689 141 0.1427 0.1568 REMARK 3 5 2.3256 - 2.1589 1.00 2669 141 0.1246 0.1474 REMARK 3 6 2.1589 - 2.0317 1.00 2687 140 0.1209 0.1551 REMARK 3 7 2.0317 - 1.9300 1.00 2649 140 0.1101 0.1068 REMARK 3 8 1.9300 - 1.8460 1.00 2660 140 0.1103 0.1305 REMARK 3 9 1.8460 - 1.7749 1.00 2630 138 0.1089 0.1473 REMARK 3 10 1.7749 - 1.7137 1.00 2627 139 0.1046 0.1352 REMARK 3 11 1.7137 - 1.6601 1.00 2624 138 0.0994 0.1268 REMARK 3 12 1.6601 - 1.6126 1.00 2633 138 0.0999 0.1456 REMARK 3 13 1.6126 - 1.5702 1.00 2617 139 0.0961 0.1238 REMARK 3 14 1.5702 - 1.5319 1.00 2637 138 0.1028 0.1177 REMARK 3 15 1.5319 - 1.4971 1.00 2628 138 0.1086 0.1490 REMARK 3 16 1.4971 - 1.4652 1.00 2599 137 0.1129 0.1578 REMARK 3 17 1.4652 - 1.4359 1.00 2621 139 0.1215 0.1570 REMARK 3 18 1.4359 - 1.4088 1.00 2611 137 0.1303 0.1506 REMARK 3 19 1.4088 - 1.3836 1.00 2599 137 0.1415 0.1857 REMARK 3 20 1.3836 - 1.3602 1.00 2620 137 0.1488 0.1772 REMARK 3 21 1.3602 - 1.3382 1.00 2592 137 0.1666 0.1853 REMARK 3 22 1.3382 - 1.3177 1.00 2599 137 0.1711 0.2226 REMARK 3 23 1.3177 - 1.2983 0.98 2554 134 0.1946 0.2113 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 47.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34830 REMARK 3 B22 (A**2) : 0.34830 REMARK 3 B33 (A**2) : -0.69660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1695 REMARK 3 ANGLE : 1.268 2295 REMARK 3 CHIRALITY : 0.083 235 REMARK 3 PLANARITY : 0.007 306 REMARK 3 DIHEDRAL : 21.420 642 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ACCORDING TO THE HIGH RESOLUTION, REMARK 3 ANISOTROPIC ADP REFINEMENT WAS APPLIED FOR ALL ATOMS. LIGANDS REMARK 3 OCCUPANCIES WERE FIXED ACCORDING TO THE LANTHANIDE ION OCCUPANCY. REMARK 4 REMARK 4 4BAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290054114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : EITHER 111 OR 311 SILICON SINGLE REMARK 200 CRISTALS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JANUARY 30 2009 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.316 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64239 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BAR REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE PH 6.5, 0.3-0.9 REMARK 280 SODIUM POTASSIUM TARTRATE, 0.0006 M PROTEIN, 0.010 M LANTHANIDE REMARK 280 COMPLEX, 293 K, 5 DAYS REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.09200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.99400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.99400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.54600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.99400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.99400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.63800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.99400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.99400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.54600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.99400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.99400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 112.63800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.09200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 EU EU3 A1211 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2125 O HOH A 2156 1.97 REMARK 500 O HOH A 2125 O HOH A 2340 1.97 REMARK 500 O HOH A 2030 O HOH A 2076 1.97 REMARK 500 O HOH A 2038 O HOH A 2039 2.04 REMARK 500 O HOH A 2015 O HOH A 2117 2.05 REMARK 500 O HOH A 2046 O HOH A 2210 2.06 REMARK 500 O HOH A 2040 O HOH A 2100 2.12 REMARK 500 O HOH A 2141 O HOH A 2142 2.12 REMARK 500 O HOH A 2282 O HOH A 2288 2.14 REMARK 500 O HOH A 2221 O HOH A 2225 2.15 REMARK 500 O HOH A 2015 O HOH A 2368 2.16 REMARK 500 O4 HM6 A 1209 O HOH A 2055 2.17 REMARK 500 OD2 ASP A 55 O HOH A 2134 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2093 O HOH A 2312 4444 2.02 REMARK 500 O4 HM6 A 1208 O HOH A 2055 7465 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 25 -137.77 55.58 REMARK 500 CYS A 71 78.08 -113.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2173 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 EU3 A1211 EU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HM6 A1208 O2 REMARK 620 2 HM6 A1208 O2 0.0 REMARK 620 3 HM6 A1208 N1 64.6 64.6 REMARK 620 4 HM6 A1208 N1 64.6 64.6 0.0 REMARK 620 5 HM6 A1208 O3 131.8 131.8 67.3 67.3 REMARK 620 6 HM6 A1208 O3 131.8 131.8 67.3 67.3 0.0 REMARK 620 7 HM6 A1209 O2 75.7 75.7 72.6 72.6 86.4 86.4 REMARK 620 8 HM6 A1209 O2 75.7 75.7 72.6 72.6 86.4 86.4 0.0 REMARK 620 9 HM6 A1209 N1 69.7 69.7 121.4 121.4 137.6 137.6 61.8 61.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EU3 A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HM6 A 1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HM6 A 1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HM6 A 1210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KWN RELATED DB: PDB REMARK 900 1.2 A STRUCTURE OF THAUMATIN CRYSTALLIZED IN GEL REMARK 900 RELATED ID: 1LR2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THAUMATIN AT HIGH HYDROSTATIC PRESSURE REMARK 900 RELATED ID: 1LR3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THAUMATIN AT HIGH HYDROSTATIC PRESSURE REMARK 900 RELATED ID: 1LXZ RELATED DB: PDB REMARK 900 STRUCTURE OF THAUMATIN CRYSTALLIZED IN THE PRESENCE OF GLYCEROL REMARK 900 RELATED ID: 1LY0 RELATED DB: PDB REMARK 900 STRUCTURE OF THAUMATIN CRYSTALLIZED IN THE PRESENCE OF GLYCEROL REMARK 900 RELATED ID: 1PP3 RELATED DB: PDB REMARK 900 STRUCTURE OF THAUMATIN IN A HEXAGONAL SPACE GROUP REMARK 900 RELATED ID: 1RQW RELATED DB: PDB REMARK 900 THAUMATIN STRUCTURE AT 1.05 A RESOLUTION REMARK 900 RELATED ID: 1THI RELATED DB: PDB REMARK 900 THAUMATIN I REMARK 900 RELATED ID: 1THU RELATED DB: PDB REMARK 900 THAUMATIN ISOFORM B (MONOCLINIC CRYSTAL FORM) REMARK 900 RELATED ID: 1THV RELATED DB: PDB REMARK 900 THAUMATIN ISOFORM A (ORTHORHOMBIC CRYSTAL FORM) REMARK 900 RELATED ID: 1THW RELATED DB: PDB REMARK 900 THAUMATIN (TETRAGONAL CRYSTAL FORM) REMARK 900 RELATED ID: 2A7I RELATED DB: PDB REMARK 900 ON THE ROUTINE USE OF SOFT X-RAYS IN MACROMOLECULAR CRYSTALLOGRAPHY, REMARK 900 PART III- THE OPTIMAL DATA COLLECTION WAVELENGTH REMARK 900 RELATED ID: 2BLR RELATED DB: PDB REMARK 900 THAUMATIN BEFORE A HIGH DOSE X-RAY "BURN" REMARK 900 RELATED ID: 2BLU RELATED DB: PDB REMARK 900 THAUMATIN AFTER A HIGH DOSE X-RAY "BURN" REMARK 900 RELATED ID: 2D8O RELATED DB: PDB REMARK 900 STRUCTURE OF VIL-THAUMATIN REMARK 900 RELATED ID: 2D8P RELATED DB: PDB REMARK 900 STRUCTURE OF HYPER-VIL-THAUMATIN REMARK 900 RELATED ID: 2VHK RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION (0.94 A) STRUCTURE OF PURIFIED THAUMATIN I GROWN REMARK 900 IN SODIUM L-TARTRATE AT 22C REMARK 900 RELATED ID: 2VHR RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION (0.95A) STRUCTURE OF PURIFIED THAUMATIN I GROWN REMARK 900 IN SODIUM L-TARTRATE AT 4 C REMARK 900 RELATED ID: 2VI1 RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION (1.04 A) STRUCTURE OF PURIFIED THAUMATIN I GROWN REMARK 900 IN SODIUM D-TARTRATE AT 22 C. REMARK 900 RELATED ID: 2VI2 RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION (1.05 A) STRUCTURE OF PURIFIED THAUMATIN I GROWN REMARK 900 IN SODIUM D-TARTRATE AT 4C REMARK 900 RELATED ID: 2VI3 RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION (0.98 A) STRUCTURE OF PURIFIED THAUMATIN I GROWN REMARK 900 IN SODIUM DL-TARTRATE AT 20 C REMARK 900 RELATED ID: 2VI4 RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION (1.10 A) STRUCTURE OF PURIFIED THAUMATIN I GROWN REMARK 900 IN SODIUM DL-TARTRATE AT 6 C. REMARK 900 RELATED ID: 2VU6 RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION (0.95 A) STRUCTURE OF PURIFIED THAUMATIN I GROWN REMARK 900 IN SODIUM MESO-TARTRATE AT 19 C. REMARK 900 RELATED ID: 2VU7 RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION (1.08 A) STRUCTURE OF PURIFIED THAUMATIN I GROWN REMARK 900 IN SODIUM MESO-TARTRATE AT 4 C REMARK 900 RELATED ID: 2WBZ RELATED DB: PDB REMARK 900 1.6 A STRUCTURE OF THAUMATIN CRYSTALLIZED WITHOUT TARTRATE AT 4 C REMARK 900 RELATED ID: 4AXR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THAUMATIN FROM A AUTO-HARVESTED CRYSTAL REMARK 900 RELATED ID: 4AXU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THAUMATIN FROM AN AUTO-HARVESTED CRYSTAL, REMARK 900 CONTROL EXPERIMENT REMARK 900 RELATED ID: 4BAR RELATED DB: PDB REMARK 900 THAUMATIN FROM THAUMATOCOCCUS DANIELLII STRUCTURE IN COMPLEX WITH REMARK 900 THE EUROPIUM TRIS- HYDROXYETHYLTRIAZOLEDIPICOLINATE COMPLEX AT 1.20 REMARK 900 A RESOLUTION. DBREF 4BAL A 1 207 UNP P02883 THM1_THADA 1 207 SEQRES 1 A 207 ALA THR PHE GLU ILE VAL ASN ARG CYS SER TYR THR VAL SEQRES 2 A 207 TRP ALA ALA ALA SER LYS GLY ASP ALA ALA LEU ASP ALA SEQRES 3 A 207 GLY GLY ARG GLN LEU ASN SER GLY GLU SER TRP THR ILE SEQRES 4 A 207 ASN VAL GLU PRO GLY THR ASN GLY GLY LYS ILE TRP ALA SEQRES 5 A 207 ARG THR ASP CYS TYR PHE ASP ASP SER GLY SER GLY ILE SEQRES 6 A 207 CYS LYS THR GLY ASP CYS GLY GLY LEU LEU ARG CYS LYS SEQRES 7 A 207 ARG PHE GLY ARG PRO PRO THR THR LEU ALA GLU PHE SER SEQRES 8 A 207 LEU ASN GLN TYR GLY LYS ASP TYR ILE ASP ILE SER ASN SEQRES 9 A 207 ILE LYS GLY PHE ASN VAL PRO MET ASN PHE SER PRO THR SEQRES 10 A 207 THR ARG GLY CYS ARG GLY VAL ARG CYS ALA ALA ASP ILE SEQRES 11 A 207 VAL GLY GLN CYS PRO ALA LYS LEU LYS ALA PRO GLY GLY SEQRES 12 A 207 GLY CYS ASN ASP ALA CYS THR VAL PHE GLN THR SER GLU SEQRES 13 A 207 TYR CYS CYS THR THR GLY LYS CYS GLY PRO THR GLU TYR SEQRES 14 A 207 SER ARG PHE PHE LYS ARG LEU CYS PRO ASP ALA PHE SER SEQRES 15 A 207 TYR VAL LEU ASP LYS PRO THR THR VAL THR CYS PRO GLY SEQRES 16 A 207 SER SER ASN TYR ARG VAL THR PHE CYS PRO THR ALA HET HM6 A1208 19 HET HM6 A1209 19 HET HM6 A1210 19 HET EU3 A1211 1 HETNAM HM6 4-(4-(HYDROXYMETHYL)-1H-1,2,3-TRIAZOL-1-YL)PYRIDINE-2, HETNAM 2 HM6 6-DICARBOXYLIC ACID HETNAM EU3 EUROPIUM (III) ION HETSYN HM6 HYDROXYMETHYLTRIAZOLE DIPICOLINIC ACID FORMUL 2 HM6 3(C10 H8 N4 O5) FORMUL 5 EU3 EU 3+ FORMUL 6 HOH *376(H2 O) HELIX 1 1 ASP A 129 CYS A 134 1 6 HELIX 2 2 PRO A 135 LEU A 138 5 4 HELIX 3 3 ASP A 147 GLN A 153 1 7 HELIX 4 4 THR A 154 CYS A 159 1 6 HELIX 5 5 THR A 167 CYS A 177 1 11 SHEET 1 AA 5 SER A 36 ASN A 40 0 SHEET 2 AA 5 THR A 2 ASN A 7 -1 O PHE A 3 N ILE A 39 SHEET 3 AA 5 TYR A 199 PHE A 203 1 O TYR A 199 N GLU A 4 SHEET 4 AA 5 MET A 112 PRO A 116 -1 O ASN A 113 N THR A 202 SHEET 5 AA 5 VAL A 124 CYS A 126 -1 O VAL A 124 N PHE A 114 SHEET 1 AB 6 ALA A 23 LEU A 31 0 SHEET 2 AB 6 VAL A 13 SER A 18 -1 O VAL A 13 N LEU A 31 SHEET 3 AB 6 GLY A 48 ARG A 53 -1 O LYS A 49 N SER A 18 SHEET 4 AB 6 LEU A 87 GLN A 94 -1 O ALA A 88 N ILE A 50 SHEET 5 AB 6 LYS A 97 SER A 103 -1 O LYS A 97 N GLN A 94 SHEET 6 AB 6 VAL A 191 PRO A 194 -1 O VAL A 191 N ILE A 100 SHEET 1 AC 2 TYR A 57 PHE A 58 0 SHEET 2 AC 2 GLY A 64 ILE A 65 -1 O ILE A 65 N TYR A 57 SSBOND 1 CYS A 9 CYS A 204 1555 1555 2.11 SSBOND 2 CYS A 56 CYS A 66 1555 1555 2.08 SSBOND 3 CYS A 71 CYS A 77 1555 1555 2.04 SSBOND 4 CYS A 121 CYS A 193 1555 1555 2.08 SSBOND 5 CYS A 126 CYS A 177 1555 1555 2.10 SSBOND 6 CYS A 134 CYS A 145 1555 1555 2.08 SSBOND 7 CYS A 149 CYS A 158 1555 1555 2.05 SSBOND 8 CYS A 159 CYS A 164 1555 1555 2.09 LINK O2 HM6 A1208 EU EU3 A1211 1555 1555 2.63 LINK O2 HM6 A1208 EU EU3 A1211 1555 7465 2.63 LINK N1 HM6 A1208 EU EU3 A1211 1555 1555 2.47 LINK N1 HM6 A1208 EU EU3 A1211 1555 7465 2.70 LINK O3 HM6 A1208 EU EU3 A1211 1555 1555 2.58 LINK O3 HM6 A1208 EU EU3 A1211 1555 7465 2.79 LINK O2 HM6 A1209 EU EU3 A1211 1555 1555 2.62 LINK O2 HM6 A1209 EU EU3 A1211 1555 7465 2.62 LINK N1 HM6 A1209 EU EU3 A1211 1555 1555 2.71 LINK N1 HM6 A1209 EU EU3 A1211 1555 7465 2.47 LINK O3 HM6 A1209 EU EU3 A1211 1555 1555 2.71 LINK O3 HM6 A1209 EU EU3 A1211 1555 7465 2.50 LINK O1 HM6 A1210 EU EU3 A1211 1555 7465 2.81 LINK N1 HM6 A1210 EU EU3 A1211 1555 1555 2.64 LINK N1 HM6 A1210 EU EU3 A1211 1555 7465 2.65 LINK O3 HM6 A1210 EU EU3 A1211 1555 1555 2.73 LINK O3 HM6 A1210 EU EU3 A1211 1555 7465 2.59 LINK O1 HM6 A1210 EU EU3 A1211 1555 1555 2.66 CISPEP 1 PRO A 83 PRO A 84 0 6.25 SITE 1 AC1 3 HM6 A1208 HM6 A1209 HM6 A1210 SITE 1 AC2 9 GLY A 20 ARG A 79 PHE A 80 HM6 A1209 SITE 2 AC2 9 HM6 A1210 EU3 A1211 HOH A2055 HOH A2373 SITE 3 AC2 9 HOH A2374 SITE 1 AC3 10 LYS A 19 GLY A 20 ARG A 79 PHE A 80 SITE 2 AC3 10 HM6 A1208 HM6 A1210 EU3 A1211 HOH A2055 SITE 3 AC3 10 HOH A2373 HOH A2374 SITE 1 AC4 8 ARG A 82 HM6 A1208 HM6 A1209 EU3 A1211 SITE 2 AC4 8 HOH A2204 HOH A2207 HOH A2299 HOH A2376 CRYST1 57.988 57.988 150.184 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006658 0.00000