HEADER HYDROLASE 16-SEP-12 4BAU TITLE STRUCTURE OF A PUTATIVE EPOXIDE HYDROLASE T131D MUTANT FROM TITLE 2 PSEUDOMONAS AERUGINOSA, WITH BOUND MFA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE EPOXIDE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PA2086; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28 BASED KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.W.SCHMIDBERGER,R.SCHNELL,G.SCHNEIDER REVDAT 3 20-DEC-23 4BAU 1 REMARK REVDAT 2 17-JAN-18 4BAU 1 REMARK REVDAT 1 02-OCT-13 4BAU 0 JRNL AUTH J.W.SCHMIDBERGER,R.SCHNELL,G.SCHNEIDER JRNL TITL STRUCTURE OF A PUTATIVE EPOXIDE HYDROLASE T131D MUTANT FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA, WITH BOUND MFA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 67543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3590 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4483 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2329 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.177 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2518 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1690 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3439 ; 1.761 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4047 ; 1.130 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 5.312 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;31.584 ;22.283 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;11.077 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.241 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2846 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 558 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 948 ; 0.270 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1638 ; 0.237 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1154 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1077 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 64 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.134 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.304 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.039 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4208 ; 4.870 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 99 ;31.030 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4426 ;10.884 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4BAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290054125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04088 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71161 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 17.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 4B9A REMARK 200 REMARK 200 REMARK: STRUCTURE WAS ACTUALLY SOLVED BY REFINING AGAINST NATIVE REMARK 200 PA2086 STRUCTURE USING REFMAC. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LI2SO4, 1.25M (NH4)2SO4, 0.1 M REMARK 280 TRIS HCL PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.28500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.93000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.14250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.93000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.42750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.93000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.14250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.93000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.42750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.28500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -257.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2200 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 GLU A 75 REMARK 465 GLU A 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2304 O HOH A 2309 2.06 REMARK 500 OD1 ASP A 170 O HOH A 2221 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 43 CG HIS A 43 CD2 0.062 REMARK 500 HIS A 106 CG HIS A 106 CD2 0.073 REMARK 500 HIS A 274 CG HIS A 274 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 279 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 40 59.53 -99.49 REMARK 500 GLN A 41 -167.44 -117.49 REMARK 500 ASP A 107 -129.38 57.51 REMARK 500 ALA A 150 46.56 -102.45 REMARK 500 ALA A 150 46.56 -108.14 REMARK 500 ALA A 272 -178.86 -174.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2012 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A2015 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A2136 DISTANCE = 6.64 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAH A 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAH A 1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAH A 1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAH A 1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAH A 1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1316 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAH A 1317 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B9A RELATED DB: PDB REMARK 900 STRUCTURE OF A PUTATIVE EPOXIDE HYDROLASE FROM PSEUDOMONAS REMARK 900 AERUGINOSA. REMARK 900 RELATED ID: 4B9E RELATED DB: PDB REMARK 900 STRUCTURE OF A PUTATIVE EPOXIDE HYDROLASE FROM PSEUDOMONAS REMARK 900 AERUGINOSA, WITH BOUND MFA. REMARK 900 RELATED ID: 4BAT RELATED DB: PDB REMARK 900 STRUCTURE OF A PUTATIVE EPOXIDE HYDROLASE T131D MUTANT FROM REMARK 900 PSEUDOMONAS AERUGINOSA. REMARK 900 RELATED ID: 4BAV RELATED DB: PDB REMARK 900 STRUCTURE OF A PUTATIVE EPOXIDE HYDROLASE Q244E MUTANT FROM REMARK 900 PSEUDOMONAS AERUGINOSA. REMARK 900 RELATED ID: 4BAW RELATED DB: PDB REMARK 900 STRUCTURE OF A PUTATIVE EPOXIDE HYDROLASE Q244E MUTANT FROM REMARK 900 PSEUDOMONAS AERUGINOSA, WITH BOUND MFA REMARK 999 REMARK 999 SEQUENCE REMARK 999 CLONING AND CUTTING OF HIS TAG LEFT EXTRA N-TERMINAL REMARK 999 SERINE. T131D MUTANT. DBREF 4BAU A 1 300 UNP Q9I229 Q9I229_PSEAE 1 300 SEQADV 4BAU SER A 0 UNP Q9I229 EXPRESSION TAG SEQADV 4BAU ASP A 131 UNP Q9I229 THR 131 ENGINEERED MUTATION SEQRES 1 A 301 SER MET ASN THR ASP PRO LEU LEU PRO GLY PHE ASP TYR SEQRES 2 A 301 LEU THR LEU HIS THR SER ALA ALA ARG LEU ARG VAL ALA SEQRES 3 A 301 VAL LYS GLY SER GLY PRO PRO LEU LEU LEU LEU HIS GLY SEQRES 4 A 301 TYR PRO GLN THR HIS LEU ALA TRP HIS ARG ILE ALA PRO SEQRES 5 A 301 ARG LEU ALA GLU ASP TYR SER VAL VAL LEU ALA ASP LEU SEQRES 6 A 301 ARG GLY TYR GLY GLU SER ARG ALA LEU ASP GLU GLU GLY SEQRES 7 A 301 ALA ASP TYR SER LYS ALA ALA LEU ALA ARG ASP GLN LEU SEQRES 8 A 301 GLU THR MET GLY GLN LEU GLY PHE GLU ARG PHE ALA VAL SEQRES 9 A 301 ILE GLY HIS ASP ARG GLY ALA ARG VAL GLY TYR ARG LEU SEQRES 10 A 301 ALA LEU ASP HIS PRO GLN ALA VAL ALA ALA PHE VAL SER SEQRES 11 A 301 LEU ASP VAL VAL PRO ILE LEU ASP ASN TRP ALA ALA VAL SEQRES 12 A 301 ASN LYS VAL PHE ALA LEU ASN ALA TYR HIS TRP PHE LEU SEQRES 13 A 301 LEU ALA GLN PRO TYR ASP LEU PRO GLU ARG LEU ILE GLY SEQRES 14 A 301 ALA ASP PRO GLU HIS PHE LEU ASP TYR THR LEU ARG ARG SEQRES 15 A 301 MET ALA GLN GLY ARG ASP ILE TYR HIS PRO GLN ALA LEU SEQRES 16 A 301 GLU SER TYR ARG ARG ALA PHE ARG ASP PRO ALA VAL ARG SEQRES 17 A 301 HIS ALA MET CYS GLU ASP TYR ARG ALA ALA VAL GLY VAL SEQRES 18 A 301 ASP ALA ASP ALA ASP GLN ALA ASP ARG ASP ALA GLY ARG SEQRES 19 A 301 ARG LEU GLN CYS PRO VAL GLN VAL LEU TRP GLN GLU ARG SEQRES 20 A 301 PRO TYR ALA ALA GLY GLN HIS PRO LEU GLU ILE TRP LYS SEQRES 21 A 301 THR TRP ALA GLY GLN VAL GLU GLY ALA ALA ILE GLY ALA SEQRES 22 A 301 SER HIS MET LEU PRO GLU ASP ALA PRO ASP ALA VAL LEU SEQRES 23 A 301 GLU HIS LEU LEU GLY PHE LEU ALA SER HIS ARG GLU ALA SEQRES 24 A 301 LEU ARG HET SO4 A1301 5 HET SO4 A1302 5 HET SO4 A1303 5 HET SO4 A1304 5 HET SO4 A1305 5 HET SO4 A1306 5 HET SO4 A1307 5 HET SO4 A1308 5 HET SO4 A1309 5 HET SO4 A1310 5 HET FAH A1311 5 HET FAH A1312 5 HET FAH A1313 5 HET FAH A1314 5 HET FAH A1315 5 HET CL A1316 1 HET FAH A1317 5 HETNAM SO4 SULFATE ION HETNAM FAH FLUOROACETIC ACID HETNAM CL CHLORIDE ION FORMUL 2 SO4 10(O4 S 2-) FORMUL 12 FAH 6(C2 H3 F O2) FORMUL 17 CL CL 1- FORMUL 19 HOH *373(H2 O) HELIX 1 1 THR A 42 HIS A 47 5 6 HELIX 2 2 ILE A 49 ALA A 54 1 6 HELIX 3 3 SER A 81 GLY A 97 1 17 HELIX 4 4 ASP A 107 HIS A 120 1 14 HELIX 5 5 PRO A 134 ALA A 141 1 8 HELIX 6 6 ASN A 143 ALA A 150 1 8 HELIX 7 7 ALA A 150 LEU A 156 1 7 HELIX 8 8 ASP A 161 GLY A 168 1 8 HELIX 9 9 ASP A 170 ALA A 183 1 14 HELIX 10 10 HIS A 190 ARG A 202 1 13 HELIX 11 11 ASP A 203 GLY A 219 1 17 HELIX 12 12 GLY A 219 GLY A 232 1 14 HELIX 13 13 HIS A 253 ALA A 262 1 10 HELIX 14 14 MET A 275 ALA A 280 1 6 HELIX 15 15 ALA A 280 HIS A 295 1 16 HELIX 16 16 HIS A 295 ARG A 300 1 6 SHEET 1 AA 2 ASP A 11 HIS A 16 0 SHEET 2 AA 2 ALA A 20 LYS A 27 -1 O LEU A 22 N LEU A 15 SHEET 1 AB 2 ARG A 71 ALA A 72 0 SHEET 2 AB 2 ALA A 20 LYS A 27 1 O ARG A 21 N ARG A 71 SHEET 1 AC 8 VAL A 265 ILE A 270 0 SHEET 2 AC 8 VAL A 239 GLN A 244 1 O VAL A 239 N GLU A 266 SHEET 3 AC 8 VAL A 124 LEU A 130 1 O PHE A 127 N GLN A 240 SHEET 4 AC 8 PHE A 101 HIS A 106 1 O PHE A 101 N ALA A 125 SHEET 5 AC 8 PRO A 32 LEU A 36 1 O PRO A 32 N ALA A 102 SHEET 6 AC 8 SER A 58 ALA A 62 1 O SER A 58 N LEU A 33 SHEET 7 AC 8 ALA A 20 LYS A 27 -1 O ALA A 25 N LEU A 61 SHEET 8 AC 8 ARG A 71 ALA A 72 1 O ARG A 71 N ARG A 21 SHEET 1 AD 8 VAL A 265 ILE A 270 0 SHEET 2 AD 8 VAL A 239 GLN A 244 1 O VAL A 239 N GLU A 266 SHEET 3 AD 8 VAL A 124 LEU A 130 1 O PHE A 127 N GLN A 240 SHEET 4 AD 8 PHE A 101 HIS A 106 1 O PHE A 101 N ALA A 125 SHEET 5 AD 8 PRO A 32 LEU A 36 1 O PRO A 32 N ALA A 102 SHEET 6 AD 8 SER A 58 ALA A 62 1 O SER A 58 N LEU A 33 SHEET 7 AD 8 ALA A 20 LYS A 27 -1 O ALA A 25 N LEU A 61 SHEET 8 AD 8 ASP A 11 HIS A 16 -1 O ASP A 11 N VAL A 26 CISPEP 1 TYR A 39 PRO A 40 0 -6.07 CISPEP 2 TYR A 160 ASP A 161 0 8.73 SITE 1 AC1 5 ARG A 48 HIS A 190 HOH A2002 HOH A2360 SITE 2 AC1 5 HOH A2361 SITE 1 AC2 6 HIS A 120 PRO A 121 GLN A 122 ALA A 123 SITE 2 AC2 6 HOH A2362 HOH A2363 SITE 1 AC3 4 ARG A 199 GLN A 226 ARG A 229 HOH A2276 SITE 1 AC4 5 ARG A 234 GLN A 236 HOH A2287 HOH A2295 SITE 2 AC4 5 HOH A2300 SITE 1 AC5 8 ASP A 279 ALA A 280 PRO A 281 ASP A 282 SITE 2 AC5 8 ALA A 283 HOH A2344 HOH A2346 HOH A2364 SITE 1 AC6 7 GLN A 264 HIS A 295 GLU A 297 ALA A 298 SITE 2 AC6 7 HOH A2334 HOH A2355 HOH A2358 SITE 1 AC7 5 ALA A 19 ARG A 65 ASP A 79 ARG A 87 SITE 2 AC7 5 HOH A2107 SITE 1 AC8 1 ARG A 52 SITE 1 AC9 4 ARG A 199 FAH A1314 HOH A2256 HOH A2367 SITE 1 BC1 3 ARG A 198 HOH A2254 HOH A2368 SITE 1 BC2 9 ASP A 107 HIS A 152 TRP A 153 MET A 182 SITE 2 BC2 9 TYR A 214 HIS A 274 HOH A2160 HOH A2203 SITE 3 BC2 9 HOH A2369 SITE 1 BC3 6 ASP A 161 LEU A 162 ARG A 165 HIS A 173 SITE 2 BC3 6 TYR A 177 HOH A2370 SITE 1 BC4 5 ASP A 176 ARG A 180 TYR A 189 HOH A2371 SITE 2 BC4 5 HOH A2372 SITE 1 BC5 7 GLY A 68 GLU A 69 ARG A 199 ALA A 200 SITE 2 BC5 7 SO4 A1309 HOH A2111 HOH A2255 SITE 1 BC6 10 GLN A 240 GLU A 266 GLU A 286 HIS A 287 SITE 2 BC6 10 GLY A 290 PHE A 291 SER A 294 HOH A2302 SITE 3 BC6 10 HOH A2351 HOH A2373 SITE 1 BC7 5 ASP A 107 ARG A 108 ARG A 111 HOH A2160 SITE 2 BC7 5 HOH A2166 SITE 1 BC8 5 ALA A 83 ALA A 86 ARG A 87 ASP A 119 SITE 2 BC8 5 HIS A 120 CRYST1 83.860 83.860 140.570 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007114 0.00000