HEADER HYDROLASE 25-SEP-12 4BBJ TITLE COPPER-TRANSPORTING PIB-ATPASE IN COMPLEX WITH BERYLLIUM FLUORIDE TITLE 2 REPRESENTING THE E2P STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER EFFLUX ATPASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 91891; SOURCE 4 STRAIN: PHILADELPHIA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS HYDROLASE, CATION TRANSPORT PROTEINS, CELL MEMBRANE, HEPATOLENTICULAR KEYWDS 2 DEGENERATION, MENKES DISEASE, WILSON DISEASE, SARCOPLASMIC RETICULUM KEYWDS 3 CALCIUM-TRANSPORTING ATPASES, STRUCTURE-ACTIVITY RELATIONSHIP, KEYWDS 4 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MATTLE,P.GOURDON,P.NISSEN REVDAT 6 06-NOV-24 4BBJ 1 REMARK REVDAT 5 20-DEC-23 4BBJ 1 REMARK LINK REVDAT 4 15-APR-15 4BBJ 1 TITLE REVDAT 3 15-JAN-14 4BBJ 1 JRNL REVDAT 2 18-DEC-13 4BBJ 1 JRNL REVDAT 1 11-DEC-13 4BBJ 0 JRNL AUTH M.ANDERSSON,D.MATTLE,O.SITSEL,T.KLYMCHUK,A.NIELSEN, JRNL AUTH 2 L.B.MOLLER,S.H.WHITE,P.NISSEN,P.GOURDON JRNL TITL COPPER-TRANSPORTING P-TYPE ATPASES USE A UNIQUE ION-RELEASE JRNL TITL 2 PATHWAY JRNL REF NAT.STRUCT.MOL.BIOL. V. 21 43 2014 JRNL REFN ISSN 1545-9993 JRNL PMID 24317491 JRNL DOI 10.1038/NSMB.2721 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 30867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1793 - 6.9232 0.97 1883 150 0.1604 0.1716 REMARK 3 2 6.9232 - 5.4977 0.98 1830 144 0.1888 0.2150 REMARK 3 3 5.4977 - 4.8034 0.98 1821 146 0.1458 0.1899 REMARK 3 4 4.8034 - 4.3646 0.99 1850 148 0.1454 0.2063 REMARK 3 5 4.3646 - 4.0519 0.98 1802 144 0.1603 0.2102 REMARK 3 6 4.0519 - 3.8131 0.98 1797 143 0.1750 0.2347 REMARK 3 7 3.8131 - 3.6222 0.98 1803 145 0.1837 0.2514 REMARK 3 8 3.6222 - 3.4646 0.98 1808 145 0.1921 0.2267 REMARK 3 9 3.4646 - 3.3313 0.97 1804 144 0.2244 0.2681 REMARK 3 10 3.3313 - 3.2163 0.97 1771 140 0.2590 0.3758 REMARK 3 11 3.2163 - 3.1158 0.97 1768 139 0.2876 0.3812 REMARK 3 12 3.1158 - 3.0267 0.96 1771 144 0.3291 0.3978 REMARK 3 13 3.0267 - 2.9471 0.95 1734 138 0.3314 0.4322 REMARK 3 14 2.9471 - 2.8752 0.95 1721 144 0.3495 0.4000 REMARK 3 15 2.8752 - 2.8098 0.94 1722 134 0.3657 0.3775 REMARK 3 16 2.8098 - 2.7500 0.93 1718 116 0.4052 0.4647 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 49.05 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.01400 REMARK 3 B22 (A**2) : 16.16240 REMARK 3 B33 (A**2) : -6.14840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.26010 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5128 REMARK 3 ANGLE : 1.234 6967 REMARK 3 CHIRALITY : 0.070 835 REMARK 3 PLANARITY : 0.004 867 REMARK 3 DIHEDRAL : 16.640 1880 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 73:109) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6852 -16.1005 28.8016 REMARK 3 T TENSOR REMARK 3 T11: 0.2278 T22: 0.1321 REMARK 3 T33: 0.3736 T12: -0.1005 REMARK 3 T13: 0.0225 T23: 0.0673 REMARK 3 L TENSOR REMARK 3 L11: 2.5274 L22: 6.7131 REMARK 3 L33: 7.9710 L12: 0.4500 REMARK 3 L13: -0.2476 L23: 0.4153 REMARK 3 S TENSOR REMARK 3 S11: 0.2291 S12: -0.0569 S13: 0.7133 REMARK 3 S21: -0.2219 S22: -0.2022 S23: 0.0617 REMARK 3 S31: -0.0610 S32: 0.0341 S33: -0.1234 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 110:225) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1408 -19.5834 38.6800 REMARK 3 T TENSOR REMARK 3 T11: 0.1925 T22: 0.1729 REMARK 3 T33: 0.3299 T12: 0.0158 REMARK 3 T13: 0.0536 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 1.6956 L22: 1.7098 REMARK 3 L33: 3.2677 L12: 0.9386 REMARK 3 L13: 1.3437 L23: 0.0766 REMARK 3 S TENSOR REMARK 3 S11: -0.1628 S12: -0.1966 S13: 0.4046 REMARK 3 S21: 0.2559 S22: 0.0577 S23: -0.0275 REMARK 3 S31: -0.2606 S32: -0.1892 S33: 0.1191 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 226:334) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2479 -16.5046 23.1698 REMARK 3 T TENSOR REMARK 3 T11: 0.2919 T22: 0.4090 REMARK 3 T33: 0.3387 T12: -0.0005 REMARK 3 T13: 0.0934 T23: 0.0930 REMARK 3 L TENSOR REMARK 3 L11: 4.8188 L22: 2.8834 REMARK 3 L33: 3.2106 L12: -0.8377 REMARK 3 L13: 1.1998 L23: 1.0982 REMARK 3 S TENSOR REMARK 3 S11: -0.1893 S12: 0.1367 S13: 0.7717 REMARK 3 S21: -0.2515 S22: -0.0378 S23: -0.0547 REMARK 3 S31: -0.4682 S32: -0.3692 S33: 0.2215 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 335:560) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3703 -37.5343 19.2906 REMARK 3 T TENSOR REMARK 3 T11: 0.2798 T22: 0.3761 REMARK 3 T33: 0.2697 T12: -0.0136 REMARK 3 T13: 0.0768 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 4.7075 L22: 0.5294 REMARK 3 L33: 2.4226 L12: 0.7794 REMARK 3 L13: 2.9463 L23: 0.4241 REMARK 3 S TENSOR REMARK 3 S11: 0.1610 S12: -0.2031 S13: -0.2798 REMARK 3 S21: 0.0922 S22: -0.0150 S23: 0.0724 REMARK 3 S31: 0.1913 S32: -0.3527 S33: -0.1616 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 561:736) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3227 -37.8372 29.9086 REMARK 3 T TENSOR REMARK 3 T11: 0.3029 T22: 0.2730 REMARK 3 T33: 0.2986 T12: 0.0119 REMARK 3 T13: 0.0088 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 3.8079 L22: 0.3438 REMARK 3 L33: 0.9820 L12: 0.3396 REMARK 3 L13: 0.8186 L23: 0.0967 REMARK 3 S TENSOR REMARK 3 S11: 0.1356 S12: -0.0179 S13: -0.1014 REMARK 3 S21: 0.1910 S22: 0.0107 S23: -0.0355 REMARK 3 S31: 0.1287 S32: -0.2042 S33: -0.1527 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1290054191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32589 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.97000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3RFU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 121.00500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.68500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 121.00500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.68500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 3 REMARK 465 ASP A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 HIS A 9 REMARK 465 THR A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 GLY A 15 REMARK 465 HIS A 16 REMARK 465 ALA A 17 REMARK 465 CYS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 GLU A 21 REMARK 465 HIS A 22 REMARK 465 ASN A 23 REMARK 465 SER A 24 REMARK 465 PRO A 25 REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 465 GLN A 28 REMARK 465 GLN A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 SER A 32 REMARK 465 LYS A 33 REMARK 465 MET A 34 REMARK 465 GLU A 35 REMARK 465 GLY A 36 REMARK 465 PRO A 37 REMARK 465 ILE A 38 REMARK 465 VAL A 39 REMARK 465 TYR A 40 REMARK 465 THR A 41 REMARK 465 CYS A 42 REMARK 465 PRO A 43 REMARK 465 MET A 44 REMARK 465 HIS A 45 REMARK 465 PRO A 46 REMARK 465 GLU A 47 REMARK 465 ILE A 48 REMARK 465 ARG A 49 REMARK 465 GLN A 50 REMARK 465 SER A 51 REMARK 465 ALA A 52 REMARK 465 PRO A 53 REMARK 465 GLY A 54 REMARK 465 HIS A 55 REMARK 465 CYS A 56 REMARK 465 PRO A 57 REMARK 465 LEU A 58 REMARK 465 CYS A 59 REMARK 465 GLY A 60 REMARK 465 MET A 61 REMARK 465 ALA A 62 REMARK 465 LEU A 63 REMARK 465 GLU A 64 REMARK 465 PRO A 65 REMARK 465 GLU A 66 REMARK 465 THR A 67 REMARK 465 VAL A 68 REMARK 465 THR A 69 REMARK 465 VAL A 70 REMARK 465 SER A 71 REMARK 465 GLU A 72 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 PHE A 108 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 293 O HOH A 2009 2.13 REMARK 500 OG SER A 140 OG1 THR A 150 2.15 REMARK 500 OE1 GLU A 273 O HOH A 2014 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 108 33.87 -67.15 REMARK 500 ILE A 109 -168.30 42.87 REMARK 500 SER A 110 165.72 -47.47 REMARK 500 ALA A 176 -15.95 87.14 REMARK 500 VAL A 223 104.61 3.51 REMARK 500 GLU A 225 83.99 -68.20 REMARK 500 GLU A 286 -178.81 -171.69 REMARK 500 SER A 288 2.48 81.64 REMARK 500 ALA A 294 76.07 -112.37 REMARK 500 GLN A 298 -120.08 -81.06 REMARK 500 PHE A 302 152.92 179.28 REMARK 500 SER A 328 30.19 -82.04 REMARK 500 ILE A 332 106.44 58.88 REMARK 500 LYS A 427 -73.93 -91.13 REMARK 500 THR A 430 -64.12 -109.61 REMARK 500 ASP A 445 58.29 33.72 REMARK 500 ASP A 500 -123.17 36.27 REMARK 500 ASN A 519 61.82 -161.46 REMARK 500 ASP A 624 -20.80 -144.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 501 HIS A 502 -149.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAD A 800 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 750 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BFD A 426 OD2 REMARK 620 2 THR A 428 O 80.3 REMARK 620 3 ASP A 624 OD1 75.4 86.3 REMARK 620 4 HOH A2016 O 174.7 94.6 102.8 REMARK 620 5 HOH A2030 O 89.0 169.3 89.9 96.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CE1 A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PC A 950 DBREF 4BBJ A 1 736 UNP Q5ZWR1 Q5ZWR1_LEGPH 1 736 SEQRES 1 A 736 MET LYS HIS ASP HIS HIS GLN GLY HIS THR HIS SER GLY SEQRES 2 A 736 LYS GLY HIS ALA CYS HIS HIS GLU HIS ASN SER PRO LYS SEQRES 3 A 736 THR GLN GLN ALA SER SER LYS MET GLU GLY PRO ILE VAL SEQRES 4 A 736 TYR THR CYS PRO MET HIS PRO GLU ILE ARG GLN SER ALA SEQRES 5 A 736 PRO GLY HIS CYS PRO LEU CYS GLY MET ALA LEU GLU PRO SEQRES 6 A 736 GLU THR VAL THR VAL SER GLU VAL VAL SER PRO GLU TYR SEQRES 7 A 736 LEU ASP MET ARG ARG ARG PHE TRP ILE ALA LEU MET LEU SEQRES 8 A 736 THR ILE PRO VAL VAL ILE LEU GLU MET GLY GLY HIS GLY SEQRES 9 A 736 LEU LYS HIS PHE ILE SER GLY ASN GLY SER SER TRP ILE SEQRES 10 A 736 GLN LEU LEU LEU ALA THR PRO VAL VAL LEU TRP GLY GLY SEQRES 11 A 736 TRP PRO PHE PHE LYS ARG GLY TRP GLN SER LEU LYS THR SEQRES 12 A 736 GLY GLN LEU ASN MET PHE THR LEU ILE ALA MET GLY ILE SEQRES 13 A 736 GLY VAL ALA TRP ILE TYR SER MET VAL ALA VAL LEU TRP SEQRES 14 A 736 PRO GLY VAL PHE PRO HIS ALA PHE ARG SER GLN GLU GLY SEQRES 15 A 736 VAL VAL ALA VAL TYR PHE GLU ALA ALA ALA VAL ILE THR SEQRES 16 A 736 THR LEU VAL LEU LEU GLY GLN VAL LEU GLU LEU LYS ALA SEQRES 17 A 736 ARG GLU GLN THR GLY SER ALA ILE ARG ALA LEU LEU LYS SEQRES 18 A 736 LEU VAL PRO GLU SER ALA HIS ARG ILE LYS GLU ASP GLY SEQRES 19 A 736 SER GLU GLU GLU VAL SER LEU ASP ASN VAL ALA VAL GLY SEQRES 20 A 736 ASP LEU LEU ARG VAL ARG PRO GLY GLU LYS ILE PRO VAL SEQRES 21 A 736 ASP GLY GLU VAL GLN GLU GLY ARG SER PHE VAL ASP GLU SEQRES 22 A 736 SER MET VAL THR GLY GLU PRO ILE PRO VAL ALA LYS GLU SEQRES 23 A 736 ALA SER ALA LYS VAL ILE GLY ALA THR ILE ASN GLN THR SEQRES 24 A 736 GLY SER PHE VAL MET LYS ALA LEU HIS VAL GLY SER ASP SEQRES 25 A 736 THR MET LEU ALA ARG ILE VAL GLN MET VAL SER ASP ALA SEQRES 26 A 736 GLN ARG SER ARG ALA PRO ILE GLN ARG LEU ALA ASP THR SEQRES 27 A 736 VAL SER GLY TRP PHE VAL PRO ALA VAL ILE LEU VAL ALA SEQRES 28 A 736 VAL LEU SER PHE ILE VAL TRP ALA LEU LEU GLY PRO GLN SEQRES 29 A 736 PRO ALA LEU SER TYR GLY LEU ILE ALA ALA VAL SER VAL SEQRES 30 A 736 LEU ILE ILE ALA CYS PRO CYS ALA LEU GLY LEU ALA THR SEQRES 31 A 736 PRO MET SER ILE MET VAL GLY VAL GLY LYS GLY ALA GLN SEQRES 32 A 736 SER GLY VAL LEU ILE LYS ASN ALA GLU ALA LEU GLU ARG SEQRES 33 A 736 MET GLU LYS VAL ASN THR LEU VAL VAL BFD LYS THR GLY SEQRES 34 A 736 THR LEU THR GLU GLY HIS PRO LYS LEU THR ARG ILE VAL SEQRES 35 A 736 THR ASP ASP PHE VAL GLU ASP ASN ALA LEU ALA LEU ALA SEQRES 36 A 736 ALA ALA LEU GLU HIS GLN SER GLU HIS PRO LEU ALA ASN SEQRES 37 A 736 ALA ILE VAL HIS ALA ALA LYS GLU LYS GLY LEU SER LEU SEQRES 38 A 736 GLY SER VAL GLU ALA PHE GLU ALA PRO THR GLY LYS GLY SEQRES 39 A 736 VAL VAL GLY GLN VAL ASP GLY HIS HIS VAL ALA ILE GLY SEQRES 40 A 736 ASN ALA ARG LEU MET GLN GLU HIS GLY GLY ASP ASN ALA SEQRES 41 A 736 PRO LEU PHE GLU LYS ALA ASP GLU LEU ARG GLY LYS GLY SEQRES 42 A 736 ALA SER VAL MET PHE MET ALA VAL ASP GLY LYS THR VAL SEQRES 43 A 736 ALA LEU LEU VAL VAL GLU ASP PRO ILE LYS SER SER THR SEQRES 44 A 736 PRO GLU THR ILE LEU GLU LEU GLN GLN SER GLY ILE GLU SEQRES 45 A 736 ILE VAL MET LEU THR GLY ASP SER LYS ARG THR ALA GLU SEQRES 46 A 736 ALA VAL ALA GLY THR LEU GLY ILE LYS LYS VAL VAL ALA SEQRES 47 A 736 GLU ILE MET PRO GLU ASP LYS SER ARG ILE VAL SER GLU SEQRES 48 A 736 LEU LYS ASP LYS GLY LEU ILE VAL ALA MET ALA GLY ASP SEQRES 49 A 736 GLY VAL ASN ASP ALA PRO ALA LEU ALA LYS ALA ASP ILE SEQRES 50 A 736 GLY ILE ALA MET GLY THR GLY THR ASP VAL ALA ILE GLU SEQRES 51 A 736 SER ALA GLY VAL THR LEU LEU HIS GLY ASP LEU ARG GLY SEQRES 52 A 736 ILE ALA LYS ALA ARG ARG LEU SER GLU SER THR MET SER SEQRES 53 A 736 ASN ILE ARG GLN ASN LEU PHE PHE ALA PHE ILE TYR ASN SEQRES 54 A 736 VAL LEU GLY VAL PRO LEU ALA ALA GLY VAL LEU TYR PRO SEQRES 55 A 736 LEU THR GLY LEU LEU LEU SER PRO MET ILE ALA ALA ALA SEQRES 56 A 736 ALA MET ALA LEU SER SER VAL SER VAL ILE ILE ASN ALA SEQRES 57 A 736 LEU ARG LEU LYS ARG VAL THR LEU MODRES 4BBJ BFD A 426 ASP ASPARTATE BERYLLIUM TRIFLUORIDE HET BFD A 426 12 HET MG A 750 1 HET NAD A 800 44 HET CE1 A 900 37 HET PC A 950 11 HETNAM BFD ASPARTATE BERYLLIUM TRIFLUORIDE HETNAM MG MAGNESIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CE1 O-DODECANYL OCTAETHYLENE GLYCOL HETNAM PC PHOSPHOCHOLINE HETSYN CE1 THESIT FORMUL 1 BFD C4 H6 BE F3 N O4 2- FORMUL 2 MG MG 2+ FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 CE1 C28 H58 O9 FORMUL 5 PC C5 H15 N O4 P 1+ FORMUL 6 HOH *58(H2 O) HELIX 1 1 SER A 75 GLY A 102 1 28 HELIX 2 2 SER A 110 TRP A 128 1 19 HELIX 3 3 GLY A 130 GLY A 144 1 15 HELIX 4 4 ASN A 147 TRP A 169 1 23 HELIX 5 5 PRO A 170 PHE A 173 5 4 HELIX 6 6 TYR A 187 ALA A 218 1 32 HELIX 7 7 GLU A 273 GLY A 278 1 6 HELIX 8 8 VAL A 309 ASP A 312 5 4 HELIX 9 9 THR A 313 SER A 328 1 16 HELIX 10 10 ARG A 334 GLY A 362 1 29 HELIX 11 11 PRO A 365 CYS A 382 1 18 HELIX 12 12 ALA A 385 GLN A 403 1 19 HELIX 13 13 ASN A 410 GLU A 418 1 9 HELIX 14 14 VAL A 447 HIS A 460 1 14 HELIX 15 15 HIS A 464 GLY A 478 1 15 HELIX 16 16 ASN A 508 GLY A 516 1 9 HELIX 17 17 ASN A 519 LYS A 532 1 14 HELIX 18 18 SER A 558 SER A 569 1 12 HELIX 19 19 SER A 580 LEU A 591 1 12 HELIX 20 20 MET A 601 LYS A 615 1 15 HELIX 21 21 GLY A 625 ASN A 627 5 3 HELIX 22 22 ASP A 628 ALA A 635 1 8 HELIX 23 23 THR A 645 ALA A 652 1 8 HELIX 24 24 LEU A 661 GLY A 698 1 38 HELIX 25 25 SER A 709 LEU A 729 1 21 HELIX 26 26 ARG A 730 VAL A 734 5 5 SHEET 1 AA 6 GLU A 236 SER A 240 0 SHEET 2 AA 6 SER A 226 ILE A 230 -1 O ALA A 227 N VAL A 239 SHEET 3 AA 6 LEU A 249 VAL A 252 -1 O LEU A 249 N ILE A 230 SHEET 4 AA 6 SER A 301 HIS A 308 -1 O PHE A 302 N VAL A 252 SHEET 5 AA 6 ASP A 261 ASP A 272 -1 O ASP A 261 N LEU A 307 SHEET 6 AA 6 ILE A 296 ASN A 297 -1 O ILE A 296 N ASP A 272 SHEET 1 AB 6 GLU A 236 SER A 240 0 SHEET 2 AB 6 SER A 226 ILE A 230 -1 O ALA A 227 N VAL A 239 SHEET 3 AB 6 LEU A 249 VAL A 252 -1 O LEU A 249 N ILE A 230 SHEET 4 AB 6 SER A 301 HIS A 308 -1 O PHE A 302 N VAL A 252 SHEET 5 AB 6 ASP A 261 ASP A 272 -1 O ASP A 261 N LEU A 307 SHEET 6 AB 6 VAL A 283 GLU A 286 -1 O VAL A 283 N VAL A 271 SHEET 1 AC 2 LYS A 290 VAL A 291 0 SHEET 2 AC 2 ASP A 261 ASP A 272 -1 O GLY A 262 N VAL A 291 SHEET 1 AD 6 GLU A 236 SER A 240 0 SHEET 2 AD 6 SER A 226 ILE A 230 -1 O ALA A 227 N VAL A 239 SHEET 3 AD 6 LEU A 249 VAL A 252 -1 O LEU A 249 N ILE A 230 SHEET 4 AD 6 SER A 301 HIS A 308 -1 O PHE A 302 N VAL A 252 SHEET 5 AD 6 ASP A 261 ASP A 272 -1 O ASP A 261 N LEU A 307 SHEET 6 AD 6 LYS A 290 VAL A 291 -1 O VAL A 291 N GLY A 262 SHEET 1 AE 2 ILE A 296 ASN A 297 0 SHEET 2 AE 2 ASP A 261 ASP A 272 -1 O ASP A 272 N ILE A 296 SHEET 1 AF 7 VAL A 406 ILE A 408 0 SHEET 2 AF 7 VAL A 654 LEU A 656 -1 O THR A 655 N LEU A 407 SHEET 3 AF 7 ILE A 637 MET A 641 1 O GLY A 638 N VAL A 654 SHEET 4 AF 7 VAL A 619 GLY A 623 1 O MET A 621 N ILE A 639 SHEET 5 AF 7 THR A 422 VAL A 425 1 O THR A 422 N ALA A 620 SHEET 6 AF 7 GLU A 572 THR A 577 1 O GLU A 572 N LEU A 423 SHEET 7 AF 7 LYS A 595 ALA A 598 1 O LYS A 595 N MET A 575 SHEET 1 AG 6 LYS A 437 THR A 443 0 SHEET 2 AG 6 LYS A 544 GLU A 552 -1 O LEU A 548 N VAL A 442 SHEET 3 AG 6 SER A 535 VAL A 541 -1 O SER A 535 N VAL A 551 SHEET 4 AG 6 HIS A 502 GLY A 507 -1 O ALA A 505 N ALA A 540 SHEET 5 AG 6 GLY A 494 VAL A 499 -1 O VAL A 495 N ILE A 506 SHEET 6 AG 6 VAL A 484 GLU A 488 -1 O GLU A 485 N GLN A 498 LINK C VAL A 425 N BFD A 426 1555 1555 1.33 LINK C BFD A 426 N LYS A 427 1555 1555 1.33 LINK OD2 BFD A 426 MG MG A 750 1555 1555 2.13 LINK O THR A 428 MG MG A 750 1555 1555 2.05 LINK OD1 ASP A 624 MG MG A 750 1555 1555 2.17 LINK MG MG A 750 O HOH A2016 1555 1555 2.03 LINK MG MG A 750 O HOH A2030 1555 1555 2.03 CISPEP 1 GLY A 293 ALA A 294 0 -3.30 CISPEP 2 GLN A 364 PRO A 365 0 -6.64 SITE 1 AC1 5 BFD A 426 THR A 428 ASP A 624 HOH A2016 SITE 2 AC1 5 HOH A2030 SITE 1 AC2 8 GLU A 459 SER A 462 HIS A 464 GLY A 492 SITE 2 AC2 8 VAL A 495 ILE A 506 MET A 537 HOH A2042 SITE 1 AC3 11 ILE A 109 SER A 110 ASN A 112 TRP A 116 SITE 2 AC3 11 LEU A 120 VAL A 167 LEU A 168 GLN A 680 SITE 3 AC3 11 SER A 723 ARG A 730 HOH A2055 SITE 1 AC4 3 ARG A 84 TRP A 128 TRP A 131 CRYST1 242.010 71.370 72.430 90.00 100.01 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004132 0.000000 0.000729 0.00000 SCALE2 0.000000 0.014011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014020 0.00000