HEADER TRANSCRIPTION 02-OCT-12 4BCR TITLE STRUCTURE OF PPARALPHA IN COMPLEX WITH WY14643 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN, RESIDUES 195-468; COMPND 5 SYNONYM: PPARALPHA LBD, PPAR-ALPHA, NUCLEAR RECEPTOR SUBFAMILY 1 COMPND 6 GROUP; COMPND 7 EC: 2.3.1.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSCRIPTION, NUCLEAR RECEPTOR, PPAR, FIBRATE EXPDTA X-RAY DIFFRACTION AUTHOR A.BERNARDES,J.R.C.MUNIZ,I.POLIKARPOV REVDAT 4 08-MAY-24 4BCR 1 REMARK REVDAT 3 07-AUG-13 4BCR 1 JRNL REVDAT 2 05-JUN-13 4BCR 1 JRNL REVDAT 1 29-MAY-13 4BCR 0 JRNL AUTH A.BERNARDES,P.C.T SOUZA,J.R.C.MUNIZ,C.G.RICCI,S.D.AYERS, JRNL AUTH 2 N.M.PAREKH,A.S.GODOY,D.B.B.TRIVELLA,P.REINACH,P.WEBB, JRNL AUTH 3 M.S.SKAF,I.POLIKARPOV JRNL TITL MOLECULAR MECHANISM OF PEROXISOME PROLIFERATOR-ACTIVATED JRNL TITL 2 RECEPTOR ALPHA ACTIVATION BY WY14643: A NEW MODE OF LIGAND JRNL TITL 3 RECOGNITION AND RECEPTOR STABILIZATION JRNL REF J.MOL.BIOL. V. 425 2878 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23707408 JRNL DOI 10.1016/J.JMB.2013.05.010 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 22321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.7165 - 4.9593 0.90 2971 150 0.1238 0.1607 REMARK 3 2 4.9593 - 3.9535 0.93 2937 158 0.1159 0.1566 REMARK 3 3 3.9535 - 3.4587 0.67 2078 103 0.1621 0.2108 REMARK 3 4 3.4587 - 3.1448 0.82 2561 116 0.2002 0.2316 REMARK 3 5 3.1448 - 2.9207 0.94 2897 174 0.2335 0.2850 REMARK 3 6 2.9207 - 2.7493 0.94 2900 166 0.2526 0.2747 REMARK 3 7 2.7493 - 2.6121 0.66 2005 108 0.2800 0.3392 REMARK 3 8 2.6121 - 2.4988 0.90 2758 155 0.3136 0.3807 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 2.00 REMARK 3 B_SOL : 2.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.3900 REMARK 3 OPERATOR: K,H,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4262 REMARK 3 ANGLE : 1.350 5766 REMARK 3 CHIRALITY : 0.084 665 REMARK 3 PLANARITY : 0.006 734 REMARK 3 DIHEDRAL : 14.625 1566 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 205:238) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1396 -19.4368 -2.6578 REMARK 3 T TENSOR REMARK 3 T11: 0.3851 T22: 0.2525 REMARK 3 T33: 0.3686 T12: 0.0275 REMARK 3 T13: -0.0257 T23: -0.0765 REMARK 3 L TENSOR REMARK 3 L11: 5.9944 L22: 2.8895 REMARK 3 L33: 8.8829 L12: -1.5780 REMARK 3 L13: 3.4998 L23: -3.6753 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.2682 S13: -0.7274 REMARK 3 S21: -0.7003 S22: -0.1906 S23: 0.1516 REMARK 3 S31: 1.1160 S32: -0.1843 S33: 0.0757 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 239:261) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1316 3.2169 -12.6188 REMARK 3 T TENSOR REMARK 3 T11: 0.4379 T22: 0.3704 REMARK 3 T33: 0.3784 T12: -0.0096 REMARK 3 T13: -0.0388 T23: 0.1294 REMARK 3 L TENSOR REMARK 3 L11: 3.7012 L22: 4.7906 REMARK 3 L33: 9.4740 L12: -1.6470 REMARK 3 L13: -5.4660 L23: 0.4701 REMARK 3 S TENSOR REMARK 3 S11: 0.6536 S12: 0.5245 S13: 0.7593 REMARK 3 S21: -0.3622 S22: -0.2645 S23: 0.2229 REMARK 3 S31: -0.7327 S32: -0.4391 S33: -0.3755 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 262:367) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0120 -6.2173 1.2027 REMARK 3 T TENSOR REMARK 3 T11: 0.2556 T22: 0.1801 REMARK 3 T33: 0.2925 T12: -0.0292 REMARK 3 T13: 0.0062 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.6483 L22: 1.5288 REMARK 3 L33: 2.5460 L12: -0.8370 REMARK 3 L13: 0.5018 L23: 0.3643 REMARK 3 S TENSOR REMARK 3 S11: -0.1183 S12: 0.0199 S13: 0.3367 REMARK 3 S21: 0.1294 S22: -0.0343 S23: -0.1629 REMARK 3 S31: -0.1341 S32: 0.0240 S33: 0.1296 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 368:421) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5855 -24.2253 11.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.2211 T22: 0.2613 REMARK 3 T33: 0.3504 T12: 0.0197 REMARK 3 T13: -0.0142 T23: 0.1015 REMARK 3 L TENSOR REMARK 3 L11: 2.5104 L22: 4.9893 REMARK 3 L33: 6.1420 L12: -0.4193 REMARK 3 L13: 1.3094 L23: 1.8262 REMARK 3 S TENSOR REMARK 3 S11: -0.1321 S12: -0.1801 S13: -0.2193 REMARK 3 S21: 0.2683 S22: -0.0251 S23: 0.1450 REMARK 3 S31: 0.4353 S32: 0.3990 S33: 0.0780 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 422:466) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9032 -4.2761 7.1695 REMARK 3 T TENSOR REMARK 3 T11: 0.3696 T22: 0.2898 REMARK 3 T33: 0.3039 T12: -0.0117 REMARK 3 T13: -0.0623 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 3.4359 L22: 4.2516 REMARK 3 L33: 2.5263 L12: -0.2275 REMARK 3 L13: -0.4269 L23: 0.1435 REMARK 3 S TENSOR REMARK 3 S11: 0.1120 S12: -0.2796 S13: 0.5791 REMARK 3 S21: 0.0045 S22: -0.1401 S23: -0.6004 REMARK 3 S31: -0.5619 S32: 0.1158 S33: 0.0471 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 197:212) REMARK 3 ORIGIN FOR THE GROUP (A): -45.7459 -7.8560 30.2903 REMARK 3 T TENSOR REMARK 3 T11: 0.5059 T22: 0.3017 REMARK 3 T33: 0.7190 T12: -0.0668 REMARK 3 T13: -0.0867 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 4.5842 L22: 5.8469 REMARK 3 L33: 5.6630 L12: -4.6991 REMARK 3 L13: 1.9452 L23: -4.2506 REMARK 3 S TENSOR REMARK 3 S11: 0.7299 S12: -0.5105 S13: -1.3507 REMARK 3 S21: -0.7372 S22: 0.2247 S23: 2.1697 REMARK 3 S31: 0.9309 S32: -1.0732 S33: -0.8952 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 213:265) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0611 -13.5907 54.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.5553 T22: 0.2745 REMARK 3 T33: 0.4404 T12: 0.1184 REMARK 3 T13: -0.0900 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 0.1871 L22: 1.4045 REMARK 3 L33: 3.2666 L12: 0.3456 REMARK 3 L13: 0.5174 L23: 1.1762 REMARK 3 S TENSOR REMARK 3 S11: 0.2531 S12: -0.0480 S13: -0.4428 REMARK 3 S21: 0.3351 S22: 0.1140 S23: -0.1577 REMARK 3 S31: 0.7888 S32: 0.4428 S33: -0.3484 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 266:368) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8355 -3.6568 44.8221 REMARK 3 T TENSOR REMARK 3 T11: 0.3689 T22: 0.1339 REMARK 3 T33: 0.3507 T12: 0.0034 REMARK 3 T13: -0.0056 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.8738 L22: 0.2332 REMARK 3 L33: 3.7227 L12: -0.4623 REMARK 3 L13: 0.7690 L23: -0.8958 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: 0.0508 S13: 0.0655 REMARK 3 S21: 0.0062 S22: 0.0122 S23: -0.2477 REMARK 3 S31: 0.1977 S32: 0.0919 S33: -0.0122 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 369:462) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3223 2.2868 36.3555 REMARK 3 T TENSOR REMARK 3 T11: 0.3973 T22: 0.1431 REMARK 3 T33: 0.3315 T12: -0.0190 REMARK 3 T13: 0.0061 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 4.3858 L22: 1.9453 REMARK 3 L33: 1.8401 L12: -1.6830 REMARK 3 L13: 0.7628 L23: -1.0010 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 0.1667 S13: 0.2578 REMARK 3 S21: -0.1601 S22: -0.0050 S23: -0.0409 REMARK 3 S31: -0.1081 S32: 0.0873 S33: -0.0355 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 463:467) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5201 1.7199 33.0318 REMARK 3 T TENSOR REMARK 3 T11: 0.2905 T22: 0.6469 REMARK 3 T33: 0.7193 T12: -0.1060 REMARK 3 T13: -0.0461 T23: 0.1460 REMARK 3 L TENSOR REMARK 3 L11: 5.9181 L22: 5.8909 REMARK 3 L33: 8.1698 L12: -2.6418 REMARK 3 L13: 1.1942 L23: 2.4145 REMARK 3 S TENSOR REMARK 3 S11: -0.1531 S12: 1.4412 S13: 0.9508 REMARK 3 S21: -0.4428 S22: 0.6635 S23: -0.3563 REMARK 3 S31: -0.9451 S32: 0.8552 S33: -0.5001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BCR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4586 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22365 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 36.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 7.5, 25% PEG 20 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.03050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.02400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.17950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.02400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.03050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.17950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 195 REMARK 465 GLU A 196 REMARK 465 ASP A 197 REMARK 465 SER A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 ALA A 201 REMARK 465 ASP A 202 REMARK 465 LEU A 203 REMARK 465 MET A 467 REMARK 465 TYR A 468 REMARK 465 ILE B 195 REMARK 465 GLY B 231 REMARK 465 LYS B 232 REMARK 465 ALA B 233 REMARK 465 SER B 234 REMARK 465 ASN B 235 REMARK 465 ASN B 236 REMARK 465 PRO B 237 REMARK 465 TYR B 468 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 SER A 205 OG REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 ARG A 209 CD NE CZ NH1 NH2 REMARK 470 SER A 230 OG REMARK 470 LYS A 232 NZ REMARK 470 LYS A 252 CE NZ REMARK 470 ASN A 261 CG OD1 ND2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 LEU A 392 CG CD1 CD2 REMARK 470 GLU A 402 CG CD OE1 OE2 REMARK 470 GLN A 445 CG CD OE1 NE2 REMARK 470 LYS A 448 CG CD CE NZ REMARK 470 LYS A 449 CG CD CE NZ REMARK 470 GLU A 451 CG CD OE1 OE2 REMARK 470 SER A 452 OG REMARK 470 GLN A 461 CD OE1 NE2 REMARK 470 ARG A 465 CD NE CZ NH1 NH2 REMARK 470 ASP A 466 CG OD1 OD2 REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 ASP B 197 CG OD1 OD2 REMARK 470 LEU B 203 CG CD1 CD2 REMARK 470 LYS B 208 CD CE NZ REMARK 470 ARG B 209 NE CZ NH1 NH2 REMARK 470 LYS B 252 CD CE NZ REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 LYS B 292 NZ REMARK 470 GLU B 402 CG CD OE1 OE2 REMARK 470 ASP B 418 CG OD1 OD2 REMARK 470 LYS B 448 CG CD CE NZ REMARK 470 LYS B 449 CG CD CE NZ REMARK 470 THR B 450 OG1 CG2 REMARK 470 SER B 452 OG REMARK 470 ARG B 465 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 209 O HOH B 2002 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 255 59.90 -103.68 REMARK 500 VAL B 255 62.81 -105.12 REMARK 500 ASP B 466 51.63 -156.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 2-({4-CHLORO-6-[(2, REMARK 600 3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2-YL}SULFANYL)ACETIC ACID REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1467 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WY1 A 1468 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WY1 A 1469 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WY1 B 1468 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE WY1 B 1470 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I7G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN FROM HUMANPPAR-ALPHA REMARK 900 IN COMPLEX WITH THE AGONIST AZ 242 REMARK 900 RELATED ID: 1K7L RELATED DB: PDB REMARK 900 THE 2.5 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HUMANPPARALPHA REMARK 900 LIGAND BINDING DOMAIN BOUND WITH GW409544 AND ACO-ACTIVATOR PEPTIDE. REMARK 900 RELATED ID: 1KKQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN PPAR-ALPHA LIGAND- BINDINGDOMAIN IN REMARK 900 COMPLEX WITH AN ANTAGONIST GW6471 AND A SMRTCOREPRESSOR MOTIF DBREF 4BCR A 195 468 UNP Q07869 PPARA_HUMAN 195 468 DBREF 4BCR B 195 468 UNP Q07869 PPARA_HUMAN 195 468 SEQRES 1 A 274 ILE GLU ASP SER GLU THR ALA ASP LEU LYS SER LEU ALA SEQRES 2 A 274 LYS ARG ILE TYR GLU ALA TYR LEU LYS ASN PHE ASN MET SEQRES 3 A 274 ASN LYS VAL LYS ALA ARG VAL ILE LEU SER GLY LYS ALA SEQRES 4 A 274 SER ASN ASN PRO PRO PHE VAL ILE HIS ASP MET GLU THR SEQRES 5 A 274 LEU CYS MET ALA GLU LYS THR LEU VAL ALA LYS LEU VAL SEQRES 6 A 274 ALA ASN GLY ILE GLN ASN LYS GLU ALA GLU VAL ARG ILE SEQRES 7 A 274 PHE HIS CYS CYS GLN CYS THR SER VAL GLU THR VAL THR SEQRES 8 A 274 GLU LEU THR GLU PHE ALA LYS ALA ILE PRO GLY PHE ALA SEQRES 9 A 274 ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR SEQRES 10 A 274 GLY VAL TYR GLU ALA ILE PHE ALA MET LEU SER SER VAL SEQRES 11 A 274 MET ASN LYS ASP GLY MET LEU VAL ALA TYR GLY ASN GLY SEQRES 12 A 274 PHE ILE THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO SEQRES 13 A 274 PHE CYS ASP ILE MET GLU PRO LYS PHE ASP PHE ALA MET SEQRES 14 A 274 LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP ILE SER SEQRES 15 A 274 LEU PHE VAL ALA ALA ILE ILE CYS CYS GLY ASP ARG PRO SEQRES 16 A 274 GLY LEU LEU ASN VAL GLY HIS ILE GLU LYS MET GLN GLU SEQRES 17 A 274 GLY ILE VAL HIS VAL LEU ARG LEU HIS LEU GLN SER ASN SEQRES 18 A 274 HIS PRO ASP ASP ILE PHE LEU PHE PRO LYS LEU LEU GLN SEQRES 19 A 274 LYS MET ALA ASP LEU ARG GLN LEU VAL THR GLU HIS ALA SEQRES 20 A 274 GLN LEU VAL GLN ILE ILE LYS LYS THR GLU SER ASP ALA SEQRES 21 A 274 ALA LEU HIS PRO LEU LEU GLN GLU ILE TYR ARG ASP MET SEQRES 22 A 274 TYR SEQRES 1 B 274 ILE GLU ASP SER GLU THR ALA ASP LEU LYS SER LEU ALA SEQRES 2 B 274 LYS ARG ILE TYR GLU ALA TYR LEU LYS ASN PHE ASN MET SEQRES 3 B 274 ASN LYS VAL LYS ALA ARG VAL ILE LEU SER GLY LYS ALA SEQRES 4 B 274 SER ASN ASN PRO PRO PHE VAL ILE HIS ASP MET GLU THR SEQRES 5 B 274 LEU CYS MET ALA GLU LYS THR LEU VAL ALA LYS LEU VAL SEQRES 6 B 274 ALA ASN GLY ILE GLN ASN LYS GLU ALA GLU VAL ARG ILE SEQRES 7 B 274 PHE HIS CYS CYS GLN CYS THR SER VAL GLU THR VAL THR SEQRES 8 B 274 GLU LEU THR GLU PHE ALA LYS ALA ILE PRO GLY PHE ALA SEQRES 9 B 274 ASN LEU ASP LEU ASN ASP GLN VAL THR LEU LEU LYS TYR SEQRES 10 B 274 GLY VAL TYR GLU ALA ILE PHE ALA MET LEU SER SER VAL SEQRES 11 B 274 MET ASN LYS ASP GLY MET LEU VAL ALA TYR GLY ASN GLY SEQRES 12 B 274 PHE ILE THR ARG GLU PHE LEU LYS SER LEU ARG LYS PRO SEQRES 13 B 274 PHE CYS ASP ILE MET GLU PRO LYS PHE ASP PHE ALA MET SEQRES 14 B 274 LYS PHE ASN ALA LEU GLU LEU ASP ASP SER ASP ILE SER SEQRES 15 B 274 LEU PHE VAL ALA ALA ILE ILE CYS CYS GLY ASP ARG PRO SEQRES 16 B 274 GLY LEU LEU ASN VAL GLY HIS ILE GLU LYS MET GLN GLU SEQRES 17 B 274 GLY ILE VAL HIS VAL LEU ARG LEU HIS LEU GLN SER ASN SEQRES 18 B 274 HIS PRO ASP ASP ILE PHE LEU PHE PRO LYS LEU LEU GLN SEQRES 19 B 274 LYS MET ALA ASP LEU ARG GLN LEU VAL THR GLU HIS ALA SEQRES 20 B 274 GLN LEU VAL GLN ILE ILE LYS LYS THR GLU SER ASP ALA SEQRES 21 B 274 ALA LEU HIS PRO LEU LEU GLN GLU ILE TYR ARG ASP MET SEQRES 22 B 274 TYR HET EDO A1467 4 HET WY1 A1468 21 HET WY1 A1469 21 HET WY1 B1468 21 HET EDO B1469 4 HET WY1 B1470 21 HETNAM EDO 1,2-ETHANEDIOL HETNAM WY1 2-({4-CHLORO-6-[(2,3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2- HETNAM 2 WY1 YL}SULFANYL)ACETIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 WY1 4(C14 H14 CL N3 O2 S) FORMUL 9 HOH *62(H2 O) HELIX 1 1 LYS A 204 PHE A 218 1 15 HELIX 2 2 ASN A 221 GLY A 231 1 11 HELIX 3 3 ASP A 243 LEU A 254 1 12 HELIX 4 4 VAL A 255 ASN A 261 1 7 HELIX 5 5 GLY A 262 LYS A 266 5 5 HELIX 6 6 GLU A 267 ALA A 293 1 27 HELIX 7 7 ASP A 301 SER A 322 1 22 HELIX 8 8 ALA A 333 GLY A 335 5 3 HELIX 9 9 ARG A 341 LEU A 347 1 7 HELIX 10 10 PRO A 350 ILE A 354 5 5 HELIX 11 11 MET A 355 ALA A 367 1 13 HELIX 12 12 ASP A 371 CYS A 384 1 14 HELIX 13 13 ASN A 393 HIS A 416 1 24 HELIX 14 14 PHE A 421 GLU A 451 1 31 HELIX 15 15 HIS A 457 TYR A 464 1 8 HELIX 16 16 GLU B 196 PHE B 218 1 23 HELIX 17 17 ASN B 221 SER B 230 1 10 HELIX 18 18 ASP B 243 LEU B 254 1 12 HELIX 19 19 VAL B 255 ALA B 260 1 6 HELIX 20 20 ASN B 261 LYS B 266 5 6 HELIX 21 21 GLU B 267 ALA B 293 1 27 HELIX 22 22 ASP B 301 SER B 322 1 22 HELIX 23 23 ARG B 341 LEU B 347 1 7 HELIX 24 24 PRO B 350 ILE B 354 5 5 HELIX 25 25 MET B 355 ALA B 367 1 13 HELIX 26 26 ASP B 371 CYS B 384 1 14 HELIX 27 27 ASN B 393 HIS B 416 1 24 HELIX 28 28 PHE B 421 GLU B 451 1 31 HELIX 29 29 HIS B 457 TYR B 464 1 8 SHEET 1 AA 4 PHE A 239 ILE A 241 0 SHEET 2 AA 4 GLY A 337 THR A 340 1 O PHE A 338 N ILE A 241 SHEET 3 AA 4 GLY A 329 VAL A 332 -1 O MET A 330 N ILE A 339 SHEET 4 AA 4 MET A 325 ASN A 326 -1 O ASN A 326 N GLY A 329 SHEET 1 BA 3 PHE B 239 ILE B 241 0 SHEET 2 BA 3 GLY B 337 THR B 340 1 O PHE B 338 N ILE B 241 SHEET 3 BA 3 GLY B 329 VAL B 332 -1 O MET B 330 N ILE B 339 CISPEP 1 LYS A 232 ALA A 233 0 -3.13 CISPEP 2 LYS A 349 PRO A 350 0 2.28 CISPEP 3 LYS B 349 PRO B 350 0 3.32 SITE 1 AC1 2 PRO A 238 PHE A 338 SITE 1 AC2 14 CYS A 276 THR A 279 SER A 280 THR A 283 SITE 2 AC2 14 TYR A 314 ILE A 317 PHE A 318 LEU A 321 SITE 3 AC2 14 MET A 330 ILE A 354 MET A 355 LYS A 358 SITE 4 AC2 14 HIS A 440 TYR A 464 SITE 1 AC3 10 GLU A 251 VAL A 255 LEU A 258 LYS A 266 SITE 2 AC3 10 ARG A 271 ILE A 272 HIS A 274 CYS A 275 SITE 3 AC3 10 CYS A 278 PHE A 421 SITE 1 AC4 13 CYS B 276 GLN B 277 THR B 279 SER B 280 SITE 2 AC4 13 THR B 283 TYR B 314 PHE B 318 MET B 330 SITE 3 AC4 13 MET B 355 LYS B 358 HIS B 440 LEU B 460 SITE 4 AC4 13 TYR B 464 SITE 1 AC5 8 GLU B 251 LYS B 266 ARG B 271 ILE B 272 SITE 2 AC5 8 HIS B 274 CYS B 275 CYS B 278 ILE B 339 CRYST1 62.061 62.359 180.048 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016113 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005554 0.00000 MTRIX1 1 -0.041400 0.996700 0.069500 -12.92290 1 MTRIX2 1 0.988900 0.030900 0.145100 8.24810 1 MTRIX3 1 0.142500 0.074700 -0.987000 49.20710 1