data_4BD3 # _entry.id 4BD3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4BD3 pdb_00004bd3 10.2210/pdb4bd3/pdb PDBE EBI-54272 ? ? WWPDB D_1290054272 ? ? BMRB 18764 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2B2T unspecified 'TANDEM CHROMODOMAINS OF HUMAN CHD1 COMPLEXED WITH HISTONEH3 TAIL CONTAINING TRIMETHYLLYSINE 4 AND PHOSPHOTHREONINE 3' PDB 2B2U unspecified 'TANDEM CHROMODOMAINS OF HUMAN CHD1 COMPLEXED WITH HISTONEH3 TAIL CONTAINING TRIMETHYLLYSINE 4 AND DIMETHYLARGININE 2' PDB 2B2V unspecified 'CRYSTAL STRUCTURE ANALYSIS OF HUMAN CHD1 CHROMODOMAINS 1AND 2 BOUND TO HISTONE H3 RESI 1-15 MEK4' PDB 2B2W unspecified 'TANDEM CHROMODOMAINS OF HUMAN CHD1 COMPLEXED WITH HISTONEH3 TAIL CONTAINING TRIMETHYLLYSINE 4' PDB 2C1J unspecified 'MOLECULAR BASIS FOR THE RECOGNITION OF PHOSPHORYLATED AND PHOSPHOACETYLATED HISTONE H3 BY 14-3-3' PDB 2C1N unspecified 'MOLECULAR BASIS FOR THE RECOGNITION OF PHOSPHORYLATED AND PHOSPHOACETYLATED HISTONE H3 BY 14-3-3' PDB 2CV5 unspecified 'CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE' PDB 2UXN unspecified 'STRUCTURAL BASIS OF HISTONE DEMETHYLATION BY LSD1 REVEALED BY SUICIDE INACTIVATION' PDB 3ZVY unspecified 'PHD FINGER OF HUMAN UHRF1 IN COMPLEX WITH UNMODIFIED HISTONE H3 N-TERMINAL TAIL' PDB 4A0J unspecified 'CRYSTAL STRUCTURE OF SURVIVIN BOUND TO THE PHOSPHORYLATED N-TERMINAL TAIL OF HISTONE H3' PDB 4A0N unspecified 'CRYSTAL STRUCTURE OF SURVIVIN BOUND TO THE PHOSPHORYLATED N-TERMINAL TAIL OF HISTONE H3' PDB 4A7J unspecified 'SYMMETRIC DIMETHYLATION OF H3 ARGININE 2 IS A NOVEL HISTONE MARK THAT SUPPORTS EUCHROMATIN MAINTENANCE' BMRB 18764 unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4BD3 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-10-04 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lapinaite, A.' 1 'Simon, B.' 2 'Carlomagno, T.' 3 # _citation.id primary _citation.title 'Phf19 Links Methylated Lys36 of Histone H3 to Regulation of Polycomb Activity' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 19 _citation.page_first 1257 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23104054 _citation.pdbx_database_id_DOI 10.1038/NSMB.2434 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ballare, C.' 1 ? primary 'Lange, M.' 2 ? primary 'Lapinaite, A.' 3 ? primary 'Mas Martin, G.' 4 ? primary 'Morey, L.' 5 ? primary 'Pascu, G.' 6 ? primary 'Liefke, R.' 7 ? primary 'Simon, B.' 8 ? primary 'Shi, Y.' 9 ? primary 'Gozani, O.' 10 ? primary 'Carlomagno, T.' 11 ? primary 'Benitah, S.A.' 12 ? primary 'Di Croce, L.' 13 ? # _cell.entry_id 4BD3 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BD3 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PHD FINGER PROTEIN 19' 6721.652 1 ? ? 'TUDOR DOMAIN, RESIDUES 38-95' ? 2 polymer syn 'HISTONE H3' 1259.500 1 ? ? 'H3(31-41)K36ME3, RESIDUES 32-42' ? # _entity_name_com.entity_id 1 _entity_name_com.name 'POLYCOMB-LIKE PROTEIN 3, HPCL3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no SKLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGE SKLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGE A ? 2 'polypeptide(L)' no yes 'ATGGV(M3L)KPHRY' ATGGVKKPHRY B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LYS n 1 3 LEU n 1 4 THR n 1 5 GLU n 1 6 GLY n 1 7 GLN n 1 8 TYR n 1 9 VAL n 1 10 LEU n 1 11 CYS n 1 12 ARG n 1 13 TRP n 1 14 THR n 1 15 ASP n 1 16 GLY n 1 17 LEU n 1 18 TYR n 1 19 TYR n 1 20 LEU n 1 21 GLY n 1 22 LYS n 1 23 ILE n 1 24 LYS n 1 25 ARG n 1 26 VAL n 1 27 SER n 1 28 SER n 1 29 SER n 1 30 LYS n 1 31 GLN n 1 32 SER n 1 33 CYS n 1 34 LEU n 1 35 VAL n 1 36 THR n 1 37 PHE n 1 38 GLU n 1 39 ASP n 1 40 ASN n 1 41 SER n 1 42 LYS n 1 43 TYR n 1 44 TRP n 1 45 VAL n 1 46 LEU n 1 47 TRP n 1 48 LYS n 1 49 ASP n 1 50 ILE n 1 51 GLN n 1 52 HIS n 1 53 ALA n 1 54 GLY n 1 55 VAL n 1 56 PRO n 1 57 GLY n 1 58 GLU n 2 1 ALA n 2 2 THR n 2 3 GLY n 2 4 GLY n 2 5 VAL n 2 6 M3L n 2 7 LYS n 2 8 PRO n 2 9 HIS n 2 10 ARG n 2 11 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant 'ROSETTA 2' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET-MCN _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP PHF19_HUMAN 1 ? ? Q5T6S3 ? 2 UNP H31_HUMAN 2 ? ? P68431 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4BD3 A 1 ? 58 ? Q5T6S3 38 ? 95 ? 38 95 2 2 4BD3 B 1 ? 11 ? P68431 32 ? 42 ? 31 41 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 'TRIPLE RESONANCE' 1 2 1 NOESY 1 3 1 'EDITED -FILTERED' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.0 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1.0 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 200 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '90% WATER/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 4BD3 _pdbx_nmr_refine.method ARIA _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 4BD3 _pdbx_nmr_details.text NONE # _pdbx_nmr_ensemble.entry_id 4BD3 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION' # _pdbx_nmr_representative.entry_id 4BD3 _pdbx_nmr_representative.conformer_id 6 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS 1.2 BRUNGER 1 'structure solution' NMRView ? ? 2 # _exptl.entry_id 4BD3 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 4BD3 _struct.title 'Phf19 links methylated lysine 36 of histone H3 to regulation of Polycomb activity' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4BD3 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'PHF-19, HISTONE RECOGNITION, H3K36ME3, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B VAL 5 C ? ? ? 1_555 B M3L 6 N ? ? B VAL 35 B M3L 36 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? B M3L 6 C ? ? ? 1_555 B LYS 7 N ? ? B M3L 36 B LYS 37 1_555 ? ? ? ? ? ? ? 1.325 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 5 ? BA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel BA 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LYS A 42 ? LEU A 46 ? LYS A 79 LEU A 83 AA 2 SER A 32 ? PHE A 37 ? SER A 69 PHE A 74 AA 3 TYR A 18 ? SER A 27 ? TYR A 55 SER A 64 AA 4 PRO B 8 ? HIS B 9 ? PRO B 38 HIS B 39 AB 1 LYS A 42 ? LEU A 46 ? LYS A 79 LEU A 83 AB 2 SER A 32 ? PHE A 37 ? SER A 69 PHE A 74 AB 3 TYR A 18 ? SER A 27 ? TYR A 55 SER A 64 AB 4 TYR A 8 ? ARG A 12 ? TYR A 45 ARG A 49 AB 5 ILE A 50 ? HIS A 52 ? ILE A 87 HIS A 89 BA 1 PRO B 8 ? HIS B 9 ? PRO B 38 HIS B 39 BA 2 TYR A 18 ? SER A 27 ? TYR A 55 SER A 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 45 ? N VAL A 82 O CYS A 33 ? O CYS A 70 AA 2 3 N THR A 36 ? N THR A 73 O LYS A 22 ? O LYS A 59 AA 3 4 N TYR A 18 ? N TYR A 55 O HIS B 9 ? O HIS B 39 AB 1 2 N VAL A 45 ? N VAL A 82 O CYS A 33 ? O CYS A 70 AB 2 3 N THR A 36 ? N THR A 73 O LYS A 22 ? O LYS A 59 AB 3 4 N GLY A 21 ? N GLY A 58 O VAL A 9 ? O VAL A 46 AB 4 5 N LEU A 10 ? N LEU A 47 O GLN A 51 ? O GLN A 88 BA 1 2 N HIS B 9 ? N HIS B 39 O TYR A 18 ? O TYR A 55 # _database_PDB_matrix.entry_id 4BD3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4BD3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 38 38 SER SER A . n A 1 2 LYS 2 39 39 LYS LYS A . n A 1 3 LEU 3 40 40 LEU LEU A . n A 1 4 THR 4 41 41 THR THR A . n A 1 5 GLU 5 42 42 GLU GLU A . n A 1 6 GLY 6 43 43 GLY GLY A . n A 1 7 GLN 7 44 44 GLN GLN A . n A 1 8 TYR 8 45 45 TYR TYR A . n A 1 9 VAL 9 46 46 VAL VAL A . n A 1 10 LEU 10 47 47 LEU LEU A . n A 1 11 CYS 11 48 48 CYS CYS A . n A 1 12 ARG 12 49 49 ARG ARG A . n A 1 13 TRP 13 50 50 TRP TRP A . n A 1 14 THR 14 51 51 THR THR A . n A 1 15 ASP 15 52 52 ASP ASP A . n A 1 16 GLY 16 53 53 GLY GLY A . n A 1 17 LEU 17 54 54 LEU LEU A . n A 1 18 TYR 18 55 55 TYR TYR A . n A 1 19 TYR 19 56 56 TYR TYR A . n A 1 20 LEU 20 57 57 LEU LEU A . n A 1 21 GLY 21 58 58 GLY GLY A . n A 1 22 LYS 22 59 59 LYS LYS A . n A 1 23 ILE 23 60 60 ILE ILE A . n A 1 24 LYS 24 61 61 LYS LYS A . n A 1 25 ARG 25 62 62 ARG ARG A . n A 1 26 VAL 26 63 63 VAL VAL A . n A 1 27 SER 27 64 64 SER SER A . n A 1 28 SER 28 65 65 SER SER A . n A 1 29 SER 29 66 66 SER SER A . n A 1 30 LYS 30 67 67 LYS LYS A . n A 1 31 GLN 31 68 68 GLN GLN A . n A 1 32 SER 32 69 69 SER SER A . n A 1 33 CYS 33 70 70 CYS CYS A . n A 1 34 LEU 34 71 71 LEU LEU A . n A 1 35 VAL 35 72 72 VAL VAL A . n A 1 36 THR 36 73 73 THR THR A . n A 1 37 PHE 37 74 74 PHE PHE A . n A 1 38 GLU 38 75 75 GLU GLU A . n A 1 39 ASP 39 76 76 ASP ASP A . n A 1 40 ASN 40 77 77 ASN ASN A . n A 1 41 SER 41 78 78 SER SER A . n A 1 42 LYS 42 79 79 LYS LYS A . n A 1 43 TYR 43 80 80 TYR TYR A . n A 1 44 TRP 44 81 81 TRP TRP A . n A 1 45 VAL 45 82 82 VAL VAL A . n A 1 46 LEU 46 83 83 LEU LEU A . n A 1 47 TRP 47 84 84 TRP TRP A . n A 1 48 LYS 48 85 85 LYS LYS A . n A 1 49 ASP 49 86 86 ASP ASP A . n A 1 50 ILE 50 87 87 ILE ILE A . n A 1 51 GLN 51 88 88 GLN GLN A . n A 1 52 HIS 52 89 89 HIS HIS A . n A 1 53 ALA 53 90 90 ALA ALA A . n A 1 54 GLY 54 91 91 GLY GLY A . n A 1 55 VAL 55 92 92 VAL VAL A . n A 1 56 PRO 56 93 93 PRO PRO A . n A 1 57 GLY 57 94 94 GLY GLY A . n A 1 58 GLU 58 95 95 GLU GLU A . n B 2 1 ALA 1 31 31 ALA ALA B . n B 2 2 THR 2 32 32 THR THR B . n B 2 3 GLY 3 33 33 GLY GLY B . n B 2 4 GLY 4 34 34 GLY GLY B . n B 2 5 VAL 5 35 35 VAL VAL B . n B 2 6 M3L 6 36 36 M3L M3L B . n B 2 7 LYS 7 37 37 LYS LYS B . n B 2 8 PRO 8 38 38 PRO PRO B . n B 2 9 HIS 9 39 39 HIS HIS B . n B 2 10 ARG 10 40 40 ARG ARG B . n B 2 11 TYR 11 41 41 TYR TYR B . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id M3L _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id M3L _pdbx_struct_mod_residue.auth_seq_id 36 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details N-TRIMETHYLLYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-31 2 'Structure model' 1 1 2012-11-07 3 'Structure model' 1 2 2012-12-19 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_cs' 4 4 'Structure model' '_pdbx_database_status.status_code_mr' 5 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 4 'Structure model' '_pdbx_nmr_software.name' 7 4 'Structure model' '_pdbx_nmr_spectrometer.model' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 9 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 HB2 A ASP 76 ? ? HB2 B M3L 36 ? ? 1.32 2 7 HD23 A LEU 47 ? ? HE2 B HIS 39 ? ? 1.30 3 7 OE1 A GLU 75 ? ? HZ2 B LYS 37 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 93 ? ? -77.56 42.07 2 2 ASN A 77 ? ? 76.08 -31.62 3 3 LYS A 39 ? ? 67.13 103.04 4 3 PRO A 93 ? ? -54.54 109.90 5 3 M3L B 36 ? ? 60.06 78.69 6 4 ASN A 77 ? ? 74.01 -3.20 7 4 THR B 32 ? ? -107.13 -69.89 8 4 ARG B 40 ? ? 68.68 179.44 9 5 LYS A 39 ? ? 65.44 81.95 10 5 ASN A 77 ? ? 77.76 -31.28 11 6 VAL B 35 ? ? 62.27 93.83 12 7 LYS A 39 ? ? 62.96 102.74 13 7 THR B 32 ? ? 49.46 -98.91 14 8 ASN A 77 ? ? 72.22 -1.03 15 9 M3L B 36 ? ? -167.17 114.53 16 9 ARG B 40 ? ? 71.31 153.74 17 10 ARG B 40 ? ? 62.69 97.52 #