HEADER    TRANSCRIPTION                           04-OCT-12   4BD3              
TITLE     PHF19 LINKS METHYLATED LYSINE 36 OF HISTONE H3 TO REGULATION OF       
TITLE    2 POLYCOMB ACTIVITY                                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PHD FINGER PROTEIN 19;                                     
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: TUDOR DOMAIN, RESIDUES 38-95;                              
COMPND   5 SYNONYM: POLYCOMB-LIKE PROTEIN 3, HPCL3;                             
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: HISTONE H3;                                                
COMPND   9 CHAIN: B;                                                            
COMPND  10 FRAGMENT: H3(31-41)K36ME3, RESIDUES 32-42;                           
COMPND  11 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                            
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2;                                
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_VECTOR: PET-MCN;                                   
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  13 ORGANISM_COMMON: HUMAN;                                              
SOURCE  14 ORGANISM_TAXID: 9606                                                 
KEYWDS    PHF-19, HISTONE RECOGNITION, H3K36ME3, TRANSCRIPTION                  
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    A.LAPINAITE,B.SIMON,T.CARLOMAGNO                                      
REVDAT   4   14-JUN-23 4BD3    1       REMARK LINK                              
REVDAT   3   19-DEC-12 4BD3    1       JRNL                                     
REVDAT   2   07-NOV-12 4BD3    1       JRNL   ATOM                              
REVDAT   1   31-OCT-12 4BD3    0                                                
JRNL        AUTH   C.BALLARE,M.LANGE,A.LAPINAITE,G.MAS MARTIN,L.MOREY,G.PASCU,  
JRNL        AUTH 2 R.LIEFKE,B.SIMON,Y.SHI,O.GOZANI,T.CARLOMAGNO,S.A.BENITAH,    
JRNL        AUTH 3 L.DI CROCE                                                   
JRNL        TITL   PHF19 LINKS METHYLATED LYS36 OF HISTONE H3 TO REGULATION OF  
JRNL        TITL 2 POLYCOMB ACTIVITY                                            
JRNL        REF    NAT.STRUCT.MOL.BIOL.          V.  19  1257 2012              
JRNL        REFN                   ISSN 1545-9993                               
JRNL        PMID   23104054                                                     
JRNL        DOI    10.1038/NSMB.2434                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.2                                              
REMARK   3   AUTHORS     : BRUNGER                                              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4BD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-12.                  
REMARK 100 THE DEPOSITION ID IS D_1290054272.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298.0                              
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 200                                
REMARK 210  PRESSURE                       : 1.0 ATM                            
REMARK 210  SAMPLE CONTENTS                : 90% WATER/10% D2O                  
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : TRIPLE RESONANCE; NOESY; EDITED    
REMARK 210                                   -FILTERED                          
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRVIEW                            
REMARK 210   METHOD USED                   : ARIA                               
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : LEAST RESTRAINT VIOLATION          
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 6                   
REMARK 210                                                                      
REMARK 210 REMARK: NONE                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PQS                                                   
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 PRO A  93       42.07    -77.56                                   
REMARK 500  2 ASN A  77      -31.62     76.08                                   
REMARK 500  3 LYS A  39      103.04     67.13                                   
REMARK 500  3 PRO A  93      109.90    -54.54                                   
REMARK 500  3 M3L B  36       78.69     60.06                                   
REMARK 500  4 ASN A  77       -3.20     74.01                                   
REMARK 500  4 THR B  32      -69.89   -107.13                                   
REMARK 500  4 ARG B  40      179.44     68.68                                   
REMARK 500  5 LYS A  39       81.95     65.44                                   
REMARK 500  5 ASN A  77      -31.28     77.76                                   
REMARK 500  6 VAL B  35       93.83     62.27                                   
REMARK 500  7 LYS A  39      102.74     62.96                                   
REMARK 500  7 THR B  32      -98.91     49.46                                   
REMARK 500  8 ASN A  77       -1.03     72.22                                   
REMARK 500  9 M3L B  36      114.53   -167.17                                   
REMARK 500  9 ARG B  40      153.74     71.31                                   
REMARK 500 10 ARG B  40       97.52     62.69                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2B2T   RELATED DB: PDB                                   
REMARK 900 TANDEM CHROMODOMAINS OF HUMAN CHD1 COMPLEXED WITH HISTONEH3 TAIL     
REMARK 900 CONTAINING TRIMETHYLLYSINE 4 AND PHOSPHOTHREONINE 3                  
REMARK 900 RELATED ID: 2B2U   RELATED DB: PDB                                   
REMARK 900 TANDEM CHROMODOMAINS OF HUMAN CHD1 COMPLEXED WITH HISTONEH3 TAIL     
REMARK 900 CONTAINING TRIMETHYLLYSINE 4 AND DIMETHYLARGININE 2                  
REMARK 900 RELATED ID: 2B2V   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF HUMAN CHD1 CHROMODOMAINS 1AND 2 BOUND  
REMARK 900 TO HISTONE H3 RESI 1-15 MEK4                                         
REMARK 900 RELATED ID: 2B2W   RELATED DB: PDB                                   
REMARK 900 TANDEM CHROMODOMAINS OF HUMAN CHD1 COMPLEXED WITH HISTONEH3 TAIL     
REMARK 900 CONTAINING TRIMETHYLLYSINE 4                                         
REMARK 900 RELATED ID: 2C1J   RELATED DB: PDB                                   
REMARK 900 MOLECULAR BASIS FOR THE RECOGNITION OF PHOSPHORYLATED AND            
REMARK 900 PHOSPHOACETYLATED HISTONE H3 BY 14-3-3                               
REMARK 900 RELATED ID: 2C1N   RELATED DB: PDB                                   
REMARK 900 MOLECULAR BASIS FOR THE RECOGNITION OF PHOSPHORYLATED AND            
REMARK 900 PHOSPHOACETYLATED HISTONE H3 BY 14-3-3                               
REMARK 900 RELATED ID: 2CV5   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CORE PARTICLE                  
REMARK 900 RELATED ID: 2UXN   RELATED DB: PDB                                   
REMARK 900 STRUCTURAL BASIS OF HISTONE DEMETHYLATION BY LSD1 REVEALED BY        
REMARK 900 SUICIDE INACTIVATION                                                 
REMARK 900 RELATED ID: 3ZVY   RELATED DB: PDB                                   
REMARK 900 PHD FINGER OF HUMAN UHRF1 IN COMPLEX WITH UNMODIFIED HISTONE H3 N-   
REMARK 900 TERMINAL TAIL                                                        
REMARK 900 RELATED ID: 4A0J   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF SURVIVIN BOUND TO THE PHOSPHORYLATED N-         
REMARK 900 TERMINAL TAIL OF HISTONE H3                                          
REMARK 900 RELATED ID: 4A0N   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF SURVIVIN BOUND TO THE PHOSPHORYLATED N-         
REMARK 900 TERMINAL TAIL OF HISTONE H3                                          
REMARK 900 RELATED ID: 4A7J   RELATED DB: PDB                                   
REMARK 900 SYMMETRIC DIMETHYLATION OF H3 ARGININE 2 IS A NOVEL HISTONE MARK     
REMARK 900 THAT SUPPORTS EUCHROMATIN MAINTENANCE                                
REMARK 900 RELATED ID: 18764   RELATED DB: BMRB                                 
DBREF  4BD3 A   38    95  UNP    Q5T6S3   PHF19_HUMAN     38     95             
DBREF  4BD3 B   31    41  UNP    P68431   H31_HUMAN       32     42             
SEQRES   1 A   58  SER LYS LEU THR GLU GLY GLN TYR VAL LEU CYS ARG TRP          
SEQRES   2 A   58  THR ASP GLY LEU TYR TYR LEU GLY LYS ILE LYS ARG VAL          
SEQRES   3 A   58  SER SER SER LYS GLN SER CYS LEU VAL THR PHE GLU ASP          
SEQRES   4 A   58  ASN SER LYS TYR TRP VAL LEU TRP LYS ASP ILE GLN HIS          
SEQRES   5 A   58  ALA GLY VAL PRO GLY GLU                                      
SEQRES   1 B   11  ALA THR GLY GLY VAL M3L LYS PRO HIS ARG TYR                  
MODRES 4BD3 M3L B   36  LYS  N-TRIMETHYLLYSINE                                  
HET    M3L  B  36      31                                                       
HETNAM     M3L N-TRIMETHYLLYSINE                                                
FORMUL   2  M3L    C9 H21 N2 O2 1+                                              
SHEET    1  AA 4 LYS A  79  LEU A  83  0                                        
SHEET    2  AA 4 SER A  69  PHE A  74 -1  O  CYS A  70   N  VAL A  82           
SHEET    3  AA 4 TYR A  55  SER A  64 -1  O  LYS A  59   N  THR A  73           
SHEET    4  AA 4 PRO B  38  HIS B  39  1  O  HIS B  39   N  TYR A  55           
SHEET    1  AB 5 LYS A  79  LEU A  83  0                                        
SHEET    2  AB 5 SER A  69  PHE A  74 -1  O  CYS A  70   N  VAL A  82           
SHEET    3  AB 5 TYR A  55  SER A  64 -1  O  LYS A  59   N  THR A  73           
SHEET    4  AB 5 TYR A  45  ARG A  49 -1  O  VAL A  46   N  GLY A  58           
SHEET    5  AB 5 ILE A  87  HIS A  89 -1  O  GLN A  88   N  LEU A  47           
SHEET    1  BA 2 PRO B  38  HIS B  39  0                                        
SHEET    2  BA 2 TYR A  55  SER A  64  1  O  TYR A  55   N  HIS B  39           
LINK         C   VAL B  35                 N   M3L B  36     1555   1555  1.32  
LINK         C   M3L B  36                 N   LYS B  37     1555   1555  1.33  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1