data_4FRV # _entry.id 4FRV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4FRV pdb_00004frv 10.2210/pdb4frv/pdb RCSB RCSB073277 ? ? WWPDB D_1000073277 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4FRU _pdbx_database_related.details 'Horse wild-type cyclophilin B' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4FRV _pdbx_database_status.recvd_initial_deposition_date 2012-06-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boudko, S.P.' 1 'Ishikawa, Y.' 2 'Bachinger, H.P.' 3 # _citation.id primary _citation.title 'Crystal structures of wild-type and mutated cyclophilin B that causes hyperelastosis cutis in the American quarter horse.' _citation.journal_abbrev 'BMC Res Notes' _citation.journal_volume 5 _citation.page_first 626 _citation.page_last 626 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1756-0500 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23137129 _citation.pdbx_database_id_DOI 10.1186/1756-0500-5-626 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boudko, S.P.' 1 ? primary 'Ishikawa, Y.' 2 ? primary 'Lerch, T.F.' 3 ? primary 'Nix, J.' 4 ? primary 'Chapman, M.S.' 5 ? primary 'Bachinger, H.P.' 6 ? # _cell.entry_id 4FRV _cell.length_a 64.790 _cell.length_b 44.160 _cell.length_c 60.110 _cell.angle_alpha 90.00 _cell.angle_beta 95.45 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4FRV _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-prolyl cis-trans isomerase' 20565.660 1 5.2.1.8 G39R ? ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 3 non-polymer syn '1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE' 148.200 1 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 water nat water 18.015 276 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CYCLOPHILIN B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AMDEKKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGD GTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRD KPLKDVTIADCGKIEVEKPFAIAKE ; _entity_poly.pdbx_seq_one_letter_code_can ;AMDEKKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGD GTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRD KPLKDVTIADCGKIEVEKPFAIAKE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MET n 1 3 ASP n 1 4 GLU n 1 5 LYS n 1 6 LYS n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LYS n 1 11 VAL n 1 12 THR n 1 13 VAL n 1 14 LYS n 1 15 VAL n 1 16 TYR n 1 17 PHE n 1 18 ASP n 1 19 LEU n 1 20 ARG n 1 21 ILE n 1 22 GLY n 1 23 ASP n 1 24 GLU n 1 25 ASP n 1 26 ILE n 1 27 GLY n 1 28 ARG n 1 29 VAL n 1 30 VAL n 1 31 ILE n 1 32 GLY n 1 33 LEU n 1 34 PHE n 1 35 GLY n 1 36 LYS n 1 37 THR n 1 38 VAL n 1 39 PRO n 1 40 LYS n 1 41 THR n 1 42 VAL n 1 43 ASP n 1 44 ASN n 1 45 PHE n 1 46 VAL n 1 47 ALA n 1 48 LEU n 1 49 ALA n 1 50 THR n 1 51 GLY n 1 52 GLU n 1 53 LYS n 1 54 GLY n 1 55 PHE n 1 56 GLY n 1 57 TYR n 1 58 LYS n 1 59 ASP n 1 60 SER n 1 61 LYS n 1 62 PHE n 1 63 HIS n 1 64 ARG n 1 65 VAL n 1 66 ILE n 1 67 LYS n 1 68 ASP n 1 69 PHE n 1 70 MET n 1 71 ILE n 1 72 GLN n 1 73 GLY n 1 74 GLY n 1 75 ASP n 1 76 PHE n 1 77 THR n 1 78 ARG n 1 79 GLY n 1 80 ASP n 1 81 GLY n 1 82 THR n 1 83 GLY n 1 84 GLY n 1 85 LYS n 1 86 SER n 1 87 ILE n 1 88 TYR n 1 89 GLY n 1 90 GLU n 1 91 ARG n 1 92 PHE n 1 93 PRO n 1 94 ASP n 1 95 GLU n 1 96 ASN n 1 97 PHE n 1 98 LYS n 1 99 LEU n 1 100 LYS n 1 101 HIS n 1 102 TYR n 1 103 GLY n 1 104 PRO n 1 105 GLY n 1 106 TRP n 1 107 VAL n 1 108 SER n 1 109 MET n 1 110 ALA n 1 111 ASN n 1 112 ALA n 1 113 GLY n 1 114 LYS n 1 115 ASP n 1 116 THR n 1 117 ASN n 1 118 GLY n 1 119 SER n 1 120 GLN n 1 121 PHE n 1 122 PHE n 1 123 ILE n 1 124 THR n 1 125 THR n 1 126 VAL n 1 127 LYS n 1 128 THR n 1 129 ALA n 1 130 TRP n 1 131 LEU n 1 132 ASP n 1 133 GLY n 1 134 LYS n 1 135 HIS n 1 136 VAL n 1 137 VAL n 1 138 PHE n 1 139 GLY n 1 140 LYS n 1 141 VAL n 1 142 LEU n 1 143 GLU n 1 144 GLY n 1 145 MET n 1 146 GLU n 1 147 VAL n 1 148 VAL n 1 149 ARG n 1 150 LYS n 1 151 VAL n 1 152 GLU n 1 153 THR n 1 154 THR n 1 155 LYS n 1 156 THR n 1 157 ASP n 1 158 GLY n 1 159 ARG n 1 160 ASP n 1 161 LYS n 1 162 PRO n 1 163 LEU n 1 164 LYS n 1 165 ASP n 1 166 VAL n 1 167 THR n 1 168 ILE n 1 169 ALA n 1 170 ASP n 1 171 CYS n 1 172 GLY n 1 173 LYS n 1 174 ILE n 1 175 GLU n 1 176 VAL n 1 177 GLU n 1 178 LYS n 1 179 PRO n 1 180 PHE n 1 181 ALA n 1 182 ILE n 1 183 ALA n 1 184 LYS n 1 185 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'domestic horse,equine' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PPIB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Equus caballus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9796 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET30b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A5YBL8_HORSE _struct_ref.pdbx_db_accession A5YBL8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGT GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKP LKDVTIADCGKIEVEKPFAIAKE ; _struct_ref.pdbx_align_begin 34 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4FRV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 185 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A5YBL8 _struct_ref_seq.db_align_beg 34 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 216 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 183 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4FRV ALA A 1 ? UNP A5YBL8 ? ? 'expression tag' -1 1 1 4FRV MET A 2 ? UNP A5YBL8 ? ? 'expression tag' 0 2 1 4FRV ARG A 8 ? UNP A5YBL8 GLY 39 'SEE REMARK 999' 6 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 ME2 non-polymer . '1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE' ? 'C7 H16 O3' 148.200 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 4FRV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M MES, 10mM ZnCl2, 10% glycerol, 28% PEG MME 550, pH 7.2, VAPOR DIFFUSION, HANGING DROP' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2010-08-12 _diffrn_detector.details ;Rosenbaum-Rock monochromator 1: high-resolution double-crystal sagittal focusing, Rosenbaum-Rock monochromator 2: double crystal, Rosenbaum-Rock vertical focusing mirror ; # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.827 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.827 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4FRV _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 16.29 _reflns.d_resolution_high 1.10 _reflns.number_obs 61849 _reflns.number_all 68567 _reflns.percent_possible_obs 90.2 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.4 _reflns.B_iso_Wilson_estimate 4.4 _reflns.pdbx_redundancy 3.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.10 _reflns_shell.d_res_low 1.16 _reflns_shell.percent_possible_all 53.4 _reflns_shell.Rmerge_I_obs 0.242 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 2.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4FRV _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 61728 _refine.ls_number_reflns_all 68612 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 16.286 _refine.ls_d_res_high 1.100 _refine.ls_percent_reflns_obs 89.97 _refine.ls_R_factor_obs 0.1204 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1194 _refine.ls_R_factor_R_free 0.1380 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.99 _refine.ls_number_reflns_R_free 3083 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1CYN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.07 _refine.pdbx_overall_phase_error 12.17 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1438 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 276 _refine_hist.number_atoms_total 1731 _refine_hist.d_res_high 1.100 _refine_hist.d_res_low 16.286 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1530 'X-RAY DIFFRACTION' ? f_angle_d 1.286 ? ? 2052 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 11.606 ? ? 595 'X-RAY DIFFRACTION' ? f_chiral_restr 0.074 ? ? 219 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 261 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.1000 1.1172 1311 0.1996 44.00 0.1902 . . 76 . . . . 'X-RAY DIFFRACTION' . 1.1172 1.1355 1464 0.1788 50.00 0.1978 . . 84 . . . . 'X-RAY DIFFRACTION' . 1.1355 1.1551 1806 0.1714 60.00 0.1722 . . 69 . . . . 'X-RAY DIFFRACTION' . 1.1551 1.1761 1976 0.1618 68.00 0.1557 . . 114 . . . . 'X-RAY DIFFRACTION' . 1.1761 1.1987 2340 0.1500 79.00 0.1852 . . 110 . . . . 'X-RAY DIFFRACTION' . 1.1987 1.2231 2602 0.1346 86.00 0.1639 . . 107 . . . . 'X-RAY DIFFRACTION' . 1.2231 1.2497 2664 0.1239 93.00 0.1592 . . 161 . . . . 'X-RAY DIFFRACTION' . 1.2497 1.2788 2942 0.1160 98.00 0.1405 . . 134 . . . . 'X-RAY DIFFRACTION' . 1.2788 1.3108 2939 0.1018 100.00 0.1433 . . 154 . . . . 'X-RAY DIFFRACTION' . 1.3108 1.3462 2964 0.0964 100.00 0.1539 . . 147 . . . . 'X-RAY DIFFRACTION' . 1.3462 1.3858 2946 0.0951 100.00 0.1107 . . 162 . . . . 'X-RAY DIFFRACTION' . 1.3858 1.4305 2917 0.0913 100.00 0.1305 . . 177 . . . . 'X-RAY DIFFRACTION' . 1.4305 1.4816 2938 0.0944 100.00 0.1299 . . 157 . . . . 'X-RAY DIFFRACTION' . 1.4816 1.5409 2976 0.0919 100.00 0.1196 . . 161 . . . . 'X-RAY DIFFRACTION' . 1.5409 1.6109 2959 0.0950 100.00 0.1246 . . 155 . . . . 'X-RAY DIFFRACTION' . 1.6109 1.6958 2979 0.0977 100.00 0.1158 . . 152 . . . . 'X-RAY DIFFRACTION' . 1.6958 1.8019 2941 0.1030 100.00 0.1360 . . 168 . . . . 'X-RAY DIFFRACTION' . 1.8019 1.9408 2972 0.1059 100.00 0.1234 . . 162 . . . . 'X-RAY DIFFRACTION' . 1.9408 2.1357 2962 0.1027 100.00 0.1391 . . 157 . . . . 'X-RAY DIFFRACTION' . 2.1357 2.4439 3008 0.1143 100.00 0.1068 . . 144 . . . . 'X-RAY DIFFRACTION' . 2.4439 3.0756 2965 0.1340 100.00 0.1511 . . 179 . . . . 'X-RAY DIFFRACTION' . 3.0756 16.2874 3074 0.1430 100.00 0.1447 . . 153 . . . . # _struct.entry_id 4FRV _struct.title 'Crystal structure of mutated cyclophilin B that causes hyperelastosis cutis in the American Quarter Horse' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4FRV _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text ;cyclophilin-type PPIase, Peptidyl-prolyl cis-trans isomerase; chaperone; foldase, P3H1-CRTAP-CypB complex; LH1 binding, endoplasmic reticulum, ISOMERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 38 ? GLY A 51 ? VAL A 36 GLY A 49 1 ? 14 HELX_P HELX_P2 2 THR A 128 ? ASP A 132 ? THR A 126 ASP A 130 5 ? 5 HELX_P HELX_P3 3 GLY A 144 ? THR A 153 ? GLY A 142 THR A 151 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 23 OD2 ? ? ? 1_555 C ZN . ZN ? ? A ASP 21 A ZN 202 1_555 ? ? ? ? ? ? ? 1.934 ? ? metalc2 metalc ? ? A HIS 135 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 133 A ZN 201 1_555 ? ? ? ? ? ? ? 2.027 ? ? metalc3 metalc ? ? B ZN . ZN ? ? ? 1_555 F HOH . O ? ? A ZN 201 A HOH 479 1_555 ? ? ? ? ? ? ? 1.974 ? ? metalc4 metalc ? ? B ZN . ZN ? ? ? 1_555 F HOH . O ? ? A ZN 201 A HOH 481 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc5 metalc ? ? C ZN . ZN ? ? ? 1_555 F HOH . O ? ? A ZN 202 A HOH 307 1_555 ? ? ? ? ? ? ? 1.973 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 64 ? ILE A 66 ? ARG A 62 ILE A 64 A 2 MET A 70 ? GLY A 73 ? MET A 68 GLY A 71 A 3 PHE A 121 ? THR A 124 ? PHE A 119 THR A 122 A 4 TRP A 106 ? MET A 109 ? TRP A 104 MET A 107 A 5 VAL A 137 ? GLU A 143 ? VAL A 135 GLU A 141 A 6 GLU A 24 ? LEU A 33 ? GLU A 22 LEU A 31 A 7 LYS A 10 ? ILE A 21 ? LYS A 8 ILE A 19 A 8 VAL A 166 ? ALA A 181 ? VAL A 164 ALA A 179 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 66 ? N ILE A 64 O MET A 70 ? O MET A 68 A 2 3 N ILE A 71 ? N ILE A 69 O ILE A 123 ? O ILE A 121 A 3 4 O THR A 124 ? O THR A 122 N TRP A 106 ? N TRP A 104 A 4 5 N VAL A 107 ? N VAL A 105 O GLY A 139 ? O GLY A 137 A 5 6 O LEU A 142 ? O LEU A 140 N VAL A 30 ? N VAL A 28 A 6 7 O ILE A 31 ? O ILE A 29 N VAL A 15 ? N VAL A 13 A 7 8 N VAL A 11 ? N VAL A 9 O PHE A 180 ? O PHE A 178 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 201 ? 4 'BINDING SITE FOR RESIDUE ZN A 201' AC2 Software A ZN 202 ? 4 'BINDING SITE FOR RESIDUE ZN A 202' AC3 Software A ME2 203 ? 5 'BINDING SITE FOR RESIDUE ME2 A 203' AC4 Software A PEG 204 ? 3 'BINDING SITE FOR RESIDUE PEG A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ALA A 1 ? ALA A -1 . ? 4_546 ? 2 AC1 4 HIS A 135 ? HIS A 133 . ? 1_555 ? 3 AC1 4 HOH F . ? HOH A 479 . ? 1_555 ? 4 AC1 4 HOH F . ? HOH A 481 . ? 1_555 ? 5 AC2 4 ASP A 23 ? ASP A 21 . ? 1_555 ? 6 AC2 4 ASP A 59 ? ASP A 57 . ? 2_555 ? 7 AC2 4 GLU A 90 ? GLU A 88 . ? 3_455 ? 8 AC2 4 HOH F . ? HOH A 307 . ? 1_555 ? 9 AC3 5 ILE A 21 ? ILE A 19 . ? 1_555 ? 10 AC3 5 GLY A 22 ? GLY A 20 . ? 1_555 ? 11 AC3 5 ASP A 23 ? ASP A 21 . ? 1_555 ? 12 AC3 5 LYS A 164 ? LYS A 162 . ? 1_555 ? 13 AC3 5 HOH F . ? HOH A 472 . ? 1_555 ? 14 AC4 3 ASP A 59 ? ASP A 57 . ? 2_555 ? 15 AC4 3 ARG A 91 ? ARG A 89 . ? 3_455 ? 16 AC4 3 LYS A 164 ? LYS A 162 . ? 1_555 ? # _database_PDB_matrix.entry_id 4FRV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4FRV _atom_sites.fract_transf_matrix[1][1] 0.015434 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001473 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022645 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016712 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_