HEADER LYASE 05-MAR-13 4BE3 TITLE CRYSTAL STRUCTURE OF THE EXOLYTIC PL7 ALGINATE LYASE ALYA5 FROM TITLE 2 ZOBELLIA GALACTANIVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALGINATE LYASE, FAMILY PL7; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.2.2.11, 4.2.2.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOBELLIA GALACTANIVORANS; SOURCE 3 ORGANISM_TAXID: 63186; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PFO4; SOURCE 9 OTHER_DETAILS: ROSCOFF INHOUSE CULTURE AND ISOLATE AND GERMAN SOURCE 10 COLLECTION OF MICROORGANISMS (DSM) KEYWDS LYASE, FLAVOBACTERIUM EXPDTA X-RAY DIFFRACTION AUTHOR F.THOMAS,A.JEUDY,G.MICHEL,M.CZJZEK REVDAT 4 20-DEC-23 4BE3 1 REMARK LINK REVDAT 3 28-AUG-13 4BE3 1 JRNL REVDAT 2 03-JUL-13 4BE3 1 JRNL REVDAT 1 26-JUN-13 4BE3 0 JRNL AUTH F.THOMAS,L.C.E.LUNDQVIST,M.JAM,A.JEUDY,T.BARBEYRON, JRNL AUTH 2 C.SANDSTROM,G.MICHEL,M.CZJZEK JRNL TITL COMPARATIVE CHARACTERIZATION OF TWO MARINE ALGINATE LYASES JRNL TITL 2 FROM ZOBELLIA GALACTANIVORANS REVEALS DISTINCT MODES OF JRNL TITL 3 ACTION AND EXQUISITE ADAPTATION TO THEIR NATURAL SUBSTRATE. JRNL REF J.BIOL.CHEM. V. 288 23021 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23782694 JRNL DOI 10.1074/JBC.M113.467217 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 108458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5709 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7119 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 372 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 579 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.985 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5211 ; 0.033 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7092 ; 2.896 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 7.109 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;37.779 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 864 ;14.946 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;24.160 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 743 ; 0.382 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4057 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 350 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3830 91.5610 32.3590 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.0544 REMARK 3 T33: 0.0342 T12: -0.0135 REMARK 3 T13: -0.0161 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.4279 L22: 1.3321 REMARK 3 L33: 0.6669 L12: 0.0600 REMARK 3 L13: -0.0776 L23: -0.5309 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: -0.0275 S13: 0.0472 REMARK 3 S21: -0.1433 S22: 0.1049 S23: 0.1202 REMARK 3 S31: 0.0748 S32: 0.0341 S33: -0.0747 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 350 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2920 114.1940 0.5400 REMARK 3 T TENSOR REMARK 3 T11: 0.0471 T22: 0.0213 REMARK 3 T33: 0.0221 T12: -0.0101 REMARK 3 T13: 0.0240 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.7144 L22: 0.5851 REMARK 3 L33: 0.7693 L12: -0.1641 REMARK 3 L13: -0.3773 L23: 0.2637 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.0454 S13: 0.0531 REMARK 3 S21: -0.0286 S22: -0.0293 S23: 0.0334 REMARK 3 S31: 0.0263 S32: 0.0183 S33: -0.0066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U REMARK 3 VALUES WITH TLS ADDED. DISORDERED REGIONS WERE MODELED USING REMARK 3 LOWERED OCCUPATION FACTORS FOR SIDE CHAINS OF NOT WELL DEFINED REMARK 3 RESIDUES REMARK 4 REMARK 4 4BE3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290056037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 41.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 8.470 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Z42 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350 AND 0.2 M REMARK 280 SODIUM/POTASSIUM TARTRATE, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.07500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.95500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.07500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.95500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 351 REMARK 465 GLN A 352 REMARK 465 ALA B 351 REMARK 465 GLN B 352 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 275 O HOH A 2247 1.45 REMARK 500 O LYS B 40 O HOH B 2001 1.90 REMARK 500 O HOH B 2039 O HOH B 2041 1.99 REMARK 500 O HOH A 2150 O HOH A 2153 2.18 REMARK 500 O HOH B 2198 O HOH B 2200 2.19 REMARK 500 OE1 GLU A 157 O HOH A 2153 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 51 CD GLU A 51 OE1 0.081 REMARK 500 VAL A 66 C VAL A 66 O 0.121 REMARK 500 HIS A 78 CG HIS A 78 CD2 0.061 REMARK 500 TRP A 84 CE2 TRP A 84 CD2 0.075 REMARK 500 GLN A 292 CD GLN A 292 OE1 0.143 REMARK 500 TYR A 320 CZ TYR A 320 CE2 0.082 REMARK 500 SER A 345 CB SER A 345 OG -0.123 REMARK 500 TYR B 41 CZ TYR B 41 CE2 -0.096 REMARK 500 HIS B 78 CG HIS B 78 CD2 0.055 REMARK 500 SER B 140 CA SER B 140 CB 0.103 REMARK 500 HIS B 169 CG HIS B 169 CD2 0.059 REMARK 500 GLU B 214 CD GLU B 214 OE1 -0.075 REMARK 500 GLU B 223 CD GLU B 223 OE2 0.069 REMARK 500 GLU B 228 CD GLU B 228 OE1 -0.068 REMARK 500 SER B 275 CA SER B 275 CB 0.100 REMARK 500 SER B 275 CB SER B 275 OG 0.096 REMARK 500 TYR B 287 CE1 TYR B 287 CZ 0.083 REMARK 500 TRP B 313 CE2 TRP B 313 CD2 0.073 REMARK 500 TYR B 328 CD1 TYR B 328 CE1 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 50 CB - CG - OD1 ANGL. DEV. = 9.9 DEGREES REMARK 500 ASP A 64 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 72 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR A 141 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 283 CB - CG - CD ANGL. DEV. = -17.5 DEGREES REMARK 500 ARG A 283 NE - CZ - NH1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 283 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 323 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 SER A 345 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 LEU B 45 CB - CG - CD1 ANGL. DEV. = 14.8 DEGREES REMARK 500 MET B 49 CG - SD - CE ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP B 50 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP B 50 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP B 83 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 TYR B 178 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP B 185 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 189 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 GLU B 224 OE1 - CD - OE2 ANGL. DEV. = 7.3 DEGREES REMARK 500 PHE B 250 CG - CD2 - CE2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ILE B 269 CG1 - CB - CG2 ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG B 283 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR B 299 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP B 323 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 PHE B 338 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 48 31.40 -94.43 REMARK 500 PHE A 73 -51.72 -131.77 REMARK 500 ASN A 80 -111.09 41.76 REMARK 500 VAL A 196 -67.59 -99.98 REMARK 500 ALA A 286 -120.18 44.94 REMARK 500 ASN A 310 97.72 -161.39 REMARK 500 LYS B 40 -29.92 -156.20 REMARK 500 ASP B 72 -1.54 72.81 REMARK 500 PHE B 73 -52.96 -133.68 REMARK 500 ASN B 80 -101.20 44.81 REMARK 500 VAL B 196 -65.53 -106.23 REMARK 500 ALA B 286 -123.27 49.59 REMARK 500 ASN B 310 103.10 -167.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 103 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 399 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 116 OG1 REMARK 620 2 THR B 116 OG1 150.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRT A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAR B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZPY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MARINE PL7 ALGINATE LYASE ALYA1 FROM REMARK 900 ZOBELLIA GALACTANIVORANS DBREF 4BE3 A 39 352 UNP G0L2Y1 G0L2Y1_ZOBGA 39 352 DBREF 4BE3 B 39 352 UNP G0L2Y1 G0L2Y1_ZOBGA 39 352 SEQRES 1 A 314 THR LYS TYR PRO SER GLU LEU ILE PRO GLN MET ASP GLU SEQRES 2 A 314 TRP LYS ILE LEU LEU GLY ASP GLY THR HIS LYS GLU ASP SEQRES 3 A 314 LEU VAL ASN TYR ALA LYS ASP ASP PHE PHE TYR VAL GLU SEQRES 4 A 314 HIS GLU ASN GLU THR ASP TRP VAL VAL PHE LYS THR PRO SEQRES 5 A 314 ASN SER GLY ILE THR SER ARG THR SER SER ASN THR ARG SEQRES 6 A 314 THR GLU LEU GLY GLN LYS LYS HIS TRP ILE PRO GLU THR SEQRES 7 A 314 GLY GLY LYS LEU ASN ALA THR LEU LYS VAL GLN HIS VAL SEQRES 8 A 314 SER THR SER GLY ASP ALA ARG VAL ALA ALA SER TYR SER SEQRES 9 A 314 VAL VAL VAL GLY GLN ILE HIS SER ASP GLU GLY HIS GLU SEQRES 10 A 314 ASN GLU PRO ILE LYS ILE PHE TYR LYS LYS PHE PRO GLY SEQRES 11 A 314 HIS THR LYS GLY SER VAL PHE TRP ASN TYR GLU ILE ASN SEQRES 12 A 314 THR LYS GLY ASP ASN SER LYS ARG TRP ASP TYR SER THR SEQRES 13 A 314 ALA VAL TRP GLY TYR ASP MET SER VAL VAL GLY PRO THR SEQRES 14 A 314 ALA THR SER TYR PRO GLU GLU PRO GLU ASP GLY ILE ALA SEQRES 15 A 314 LEU GLY GLU GLU PHE SER TYR GLU ILE ASN VAL TYR GLU SEQRES 16 A 314 GLY ILE MET TYR LEU THR PHE SER SER GLU GLY HIS LYS SEQRES 17 A 314 THR ILE LYS PHE THR LYS ASN LEU LEU LYS SER ASN PHE SEQRES 18 A 314 THR LYS LYS SER ASP ILE PRO GLN GLN ILE LYS THR LEU SEQRES 19 A 314 TYR ALA SER ILE GLY ARG ASP GLY ILE GLU ARG GLU ASN SEQRES 20 A 314 ALA TYR ALA GLY GLU ILE GLN TYR PHE LYS LEU GLY ALA SEQRES 21 A 314 TYR ASN GLN THR ASN GLY LYS SER PRO GLU ASP ASN LEU SEQRES 22 A 314 VAL TRP SER THR GLY ALA ASP VAL TYR ASP GLY ASP ILE SEQRES 23 A 314 ALA LYS GLN TYR ALA ASN GLY SER TYR ALA GLU VAL TRP SEQRES 24 A 314 PHE LYS GLU ALA THR LEU GLY SER GLY SER ALA PRO GLU SEQRES 25 A 314 ALA GLN SEQRES 1 B 314 THR LYS TYR PRO SER GLU LEU ILE PRO GLN MET ASP GLU SEQRES 2 B 314 TRP LYS ILE LEU LEU GLY ASP GLY THR HIS LYS GLU ASP SEQRES 3 B 314 LEU VAL ASN TYR ALA LYS ASP ASP PHE PHE TYR VAL GLU SEQRES 4 B 314 HIS GLU ASN GLU THR ASP TRP VAL VAL PHE LYS THR PRO SEQRES 5 B 314 ASN SER GLY ILE THR SER ARG THR SER SER ASN THR ARG SEQRES 6 B 314 THR GLU LEU GLY GLN LYS LYS HIS TRP ILE PRO GLU THR SEQRES 7 B 314 GLY GLY LYS LEU ASN ALA THR LEU LYS VAL GLN HIS VAL SEQRES 8 B 314 SER THR SER GLY ASP ALA ARG VAL ALA ALA SER TYR SER SEQRES 9 B 314 VAL VAL VAL GLY GLN ILE HIS SER ASP GLU GLY HIS GLU SEQRES 10 B 314 ASN GLU PRO ILE LYS ILE PHE TYR LYS LYS PHE PRO GLY SEQRES 11 B 314 HIS THR LYS GLY SER VAL PHE TRP ASN TYR GLU ILE ASN SEQRES 12 B 314 THR LYS GLY ASP ASN SER LYS ARG TRP ASP TYR SER THR SEQRES 13 B 314 ALA VAL TRP GLY TYR ASP MET SER VAL VAL GLY PRO THR SEQRES 14 B 314 ALA THR SER TYR PRO GLU GLU PRO GLU ASP GLY ILE ALA SEQRES 15 B 314 LEU GLY GLU GLU PHE SER TYR GLU ILE ASN VAL TYR GLU SEQRES 16 B 314 GLY ILE MET TYR LEU THR PHE SER SER GLU GLY HIS LYS SEQRES 17 B 314 THR ILE LYS PHE THR LYS ASN LEU LEU LYS SER ASN PHE SEQRES 18 B 314 THR LYS LYS SER ASP ILE PRO GLN GLN ILE LYS THR LEU SEQRES 19 B 314 TYR ALA SER ILE GLY ARG ASP GLY ILE GLU ARG GLU ASN SEQRES 20 B 314 ALA TYR ALA GLY GLU ILE GLN TYR PHE LYS LEU GLY ALA SEQRES 21 B 314 TYR ASN GLN THR ASN GLY LYS SER PRO GLU ASP ASN LEU SEQRES 22 B 314 VAL TRP SER THR GLY ALA ASP VAL TYR ASP GLY ASP ILE SEQRES 23 B 314 ALA LYS GLN TYR ALA ASN GLY SER TYR ALA GLU VAL TRP SEQRES 24 B 314 PHE LYS GLU ALA THR LEU GLY SER GLY SER ALA PRO GLU SEQRES 25 B 314 ALA GLN HET SRT A 400 10 HET NA B 399 1 HET TAR B 400 10 HET TLA B 401 10 HETNAM SRT S,R MESO-TARTARIC ACID HETNAM NA SODIUM ION HETNAM TAR D(-)-TARTARIC ACID HETNAM TLA L(+)-TARTARIC ACID FORMUL 3 SRT C4 H6 O6 FORMUL 4 NA NA 1+ FORMUL 5 TAR C4 H6 O6 FORMUL 6 TLA C4 H6 O6 FORMUL 7 HOH *579(H2 O) HELIX 1 1 TYR A 41 LEU A 45 5 5 HELIX 2 2 GLN A 48 ASP A 50 5 3 HELIX 3 3 ASP A 185 ARG A 189 5 5 HELIX 4 4 LYS A 261 ILE A 265 5 5 HELIX 5 5 PRO A 266 TYR A 273 1 8 HELIX 6 6 SER A 306 ASN A 310 5 5 HELIX 7 7 VAL A 319 GLY A 322 5 4 HELIX 8 8 ASP A 323 ASN A 330 1 8 HELIX 9 9 TYR B 41 LEU B 45 5 5 HELIX 10 10 GLN B 48 ASP B 50 5 3 HELIX 11 11 ASP B 185 ARG B 189 5 5 HELIX 12 12 LYS B 261 ILE B 265 5 5 HELIX 13 13 PRO B 266 TYR B 273 1 8 HELIX 14 14 ALA B 274 GLY B 277 5 4 HELIX 15 15 VAL B 319 GLY B 322 5 4 HELIX 16 16 ASP B 323 ASN B 330 1 8 SHEET 1 AA 8 HIS A 61 LYS A 62 0 SHEET 2 AA 8 TRP A 52 LEU A 55 -1 O ILE A 54 N LYS A 62 SHEET 3 AA 8 ARG A 103 GLN A 108 -1 O GLU A 105 N LEU A 55 SHEET 4 AA 8 GLN A 292 ASN A 300 -1 O PHE A 294 N GLN A 108 SHEET 5 AA 8 SER A 142 SER A 150 -1 O VAL A 144 N TYR A 299 SHEET 6 AA 8 ILE A 159 LYS A 164 -1 O ILE A 159 N ILE A 148 SHEET 7 AA 8 LYS A 171 GLU A 179 -1 O SER A 173 N LYS A 164 SHEET 8 AA 8 ASP A 191 TRP A 197 -1 O TYR A 192 N TYR A 178 SHEET 1 AB 8 HIS A 61 LYS A 62 0 SHEET 2 AB 8 TRP A 52 LEU A 55 -1 O ILE A 54 N LYS A 62 SHEET 3 AB 8 ARG A 103 GLN A 108 -1 O GLU A 105 N LEU A 55 SHEET 4 AB 8 GLN A 292 ASN A 300 -1 O PHE A 294 N GLN A 108 SHEET 5 AB 8 SER A 142 SER A 150 -1 O VAL A 144 N TYR A 299 SHEET 6 AB 8 ILE A 159 LYS A 164 -1 O ILE A 159 N ILE A 148 SHEET 7 AB 8 LYS A 171 GLU A 179 -1 O SER A 173 N LYS A 164 SHEET 8 AB 8 ILE A 219 ALA A 220 -1 O ILE A 219 N GLY A 172 SHEET 1 AC 2 ASP A 191 TRP A 197 0 SHEET 2 AC 2 LYS A 171 GLU A 179 -1 O VAL A 174 N VAL A 196 SHEET 1 AD 7 PHE A 74 GLU A 79 0 SHEET 2 AD 7 THR A 82 PRO A 90 -1 O THR A 82 N GLU A 79 SHEET 3 AD 7 TYR A 333 GLY A 344 -1 O ALA A 334 N THR A 89 SHEET 4 AD 7 GLY A 118 HIS A 128 -1 O LYS A 119 N GLY A 344 SHEET 5 AD 7 PHE A 225 TYR A 232 -1 O PHE A 225 N LEU A 124 SHEET 6 AD 7 ILE A 235 SER A 241 -1 O ILE A 235 N TYR A 232 SHEET 7 AD 7 ILE A 248 ASN A 253 -1 O ILE A 248 N PHE A 240 SHEET 1 BA 8 HIS B 61 LYS B 62 0 SHEET 2 BA 8 TRP B 52 LEU B 55 -1 O ILE B 54 N LYS B 62 SHEET 3 BA 8 ARG B 103 GLN B 108 -1 O GLU B 105 N LEU B 55 SHEET 4 BA 8 GLN B 292 ASN B 300 -1 O PHE B 294 N GLN B 108 SHEET 5 BA 8 SER B 142 SER B 150 -1 O VAL B 144 N TYR B 299 SHEET 6 BA 8 ILE B 159 LYS B 164 -1 O ILE B 159 N ILE B 148 SHEET 7 BA 8 LYS B 171 GLU B 179 -1 O SER B 173 N LYS B 164 SHEET 8 BA 8 ASP B 191 TRP B 197 -1 O TYR B 192 N TYR B 178 SHEET 1 BB 8 HIS B 61 LYS B 62 0 SHEET 2 BB 8 TRP B 52 LEU B 55 -1 O ILE B 54 N LYS B 62 SHEET 3 BB 8 ARG B 103 GLN B 108 -1 O GLU B 105 N LEU B 55 SHEET 4 BB 8 GLN B 292 ASN B 300 -1 O PHE B 294 N GLN B 108 SHEET 5 BB 8 SER B 142 SER B 150 -1 O VAL B 144 N TYR B 299 SHEET 6 BB 8 ILE B 159 LYS B 164 -1 O ILE B 159 N ILE B 148 SHEET 7 BB 8 LYS B 171 GLU B 179 -1 O SER B 173 N LYS B 164 SHEET 8 BB 8 ILE B 219 ALA B 220 -1 O ILE B 219 N GLY B 172 SHEET 1 BC 2 ASP B 191 TRP B 197 0 SHEET 2 BC 2 LYS B 171 GLU B 179 -1 O VAL B 174 N VAL B 196 SHEET 1 BD 7 PHE B 74 GLU B 79 0 SHEET 2 BD 7 THR B 82 PRO B 90 -1 O THR B 82 N GLU B 79 SHEET 3 BD 7 TYR B 333 GLY B 344 -1 O ALA B 334 N THR B 89 SHEET 4 BD 7 GLY B 118 HIS B 128 -1 O LYS B 119 N GLY B 344 SHEET 5 BD 7 PHE B 225 TYR B 232 -1 O PHE B 225 N LEU B 124 SHEET 6 BD 7 ILE B 235 SER B 241 -1 O ILE B 235 N TYR B 232 SHEET 7 BD 7 ILE B 248 ASN B 253 -1 O ILE B 248 N PHE B 240 LINK OG1 THR A 116 NA NA B 399 1555 1555 3.16 LINK OG1 THR B 116 NA NA B 399 1555 1555 3.12 SITE 1 AC1 10 HIS A 61 THR A 98 ARG A 103 HIS A 149 SITE 2 AC1 10 TYR A 293 LYS A 295 HOH A2072 HOH A2076 SITE 3 AC1 10 HOH A2256 HOH A2286 SITE 1 AC2 6 TRP A 112 ILE A 113 THR A 116 TRP B 112 SITE 2 AC2 6 ILE B 113 THR B 116 SITE 1 AC3 8 TYR B 328 ALA B 329 ASN B 330 GLY B 331 SITE 2 AC3 8 TYR B 333 HOH B2115 HOH B2119 HOH B2280 SITE 1 AC4 10 HIS B 61 THR B 98 ARG B 103 HIS B 149 SITE 2 AC4 10 TYR B 293 LYS B 295 HOH B2082 HOH B2087 SITE 3 AC4 10 HOH B2258 HOH B2293 CRYST1 93.420 93.910 130.150 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010704 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007683 0.00000