HEADER CELL ADHESION 06-MAR-13 4BE6 TITLE V. CHOLERA BIOFILM SCAFFOLDING PROTEIN RBMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RBMA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE MJ-1236; SOURCE 3 ORGANISM_TAXID: 593588; SOURCE 4 VARIANT: SEROTYPE O1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS CELL ADHESION, BIOFILM, BACTERIAL COMMUNITY, SCAFFOLDING EXPDTA X-RAY DIFFRACTION AUTHOR M.MAESTRE-REYNA,A.H.-J.WANG REVDAT 4 20-DEC-23 4BE6 1 REMARK LINK REVDAT 3 08-JAN-14 4BE6 1 JRNL REVDAT 2 25-DEC-13 4BE6 1 JRNL REVDAT 1 18-DEC-13 4BE6 0 JRNL AUTH M.MAESTRE-REYNA,W.-J.WU,A.H.-J.WANG JRNL TITL STRUCTURAL INSIGHTS INTO RBMA, A BIOFILM SCAFFOLDING PROTEIN JRNL TITL 2 OF V. CHOLERAE. JRNL REF PLOS ONE V. 8 82458 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24340031 JRNL DOI 10.1371/JOURNAL.PONE.0082458 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 44436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.1300 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.1730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 537 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.690 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3677 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5015 ; 1.447 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 6.560 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;38.949 ;26.048 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;14.320 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.461 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 571 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2823 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3676 ; 3.599 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 236 ;49.270 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3894 ;21.216 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4BE6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290056042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : FIXED - EXIT DOUBLE CRYSTAL SI REMARK 200 (1 1 1) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50815 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.21 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BE5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, PH 6, 0.2 M NACL, 10 REMARK 280 MM SIALIC ACID REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.49200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.11000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.11000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.24600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.11000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.11000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.73800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.11000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.11000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.24600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.11000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.11000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.73800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.49200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2110 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 HIS A 29 REMARK 465 MET A 30 REMARK 465 GLU A 31 REMARK 465 VAL A 32 REMARK 465 ASP A 33 REMARK 465 CYS A 34 REMARK 465 GLU A 35 REMARK 465 LEU A 36 REMARK 465 GLN A 37 REMARK 465 ALA A 99 REMARK 465 GLN A 100 REMARK 465 GLN A 101 REMARK 465 GLU A 102 REMARK 465 SER A 103 REMARK 465 ASP A 104 REMARK 465 ALA A 105 REMARK 465 LEU A 106 REMARK 465 THR A 107 REMARK 465 MET B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 SER B 20 REMARK 465 SER B 21 REMARK 465 GLY B 22 REMARK 465 LEU B 23 REMARK 465 VAL B 24 REMARK 465 PRO B 25 REMARK 465 ARG B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 HIS B 29 REMARK 465 MET B 30 REMARK 465 GLU B 31 REMARK 465 VAL B 32 REMARK 465 ASP B 33 REMARK 465 CYS B 34 REMARK 465 GLU B 35 REMARK 465 LEU B 36 REMARK 465 GLN B 37 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 65 CD NE CZ NH1 NH2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 GLU A 70 CG CD OE1 OE2 REMARK 470 ARG A 110 CG CD NE CZ NH1 NH2 REMARK 470 MET A 111 SD CE REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 128 CE NZ REMARK 470 LYS A 141 CD CE NZ REMARK 470 VAL B 39 CG1 CG2 REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 ARG B 110 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 128 CE NZ REMARK 470 LYS B 141 CD CE NZ REMARK 470 ASN B 156 CG OD1 ND2 REMARK 470 LYS B 240 CE NZ REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2085 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B2260 DISTANCE = 6.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1272 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2109 O REMARK 620 2 HOH A2244 O 97.7 REMARK 620 3 ASP B 210 OD1 97.7 99.8 REMARK 620 4 ASP B 210 OD2 115.2 131.6 44.0 REMARK 620 5 HOH B2204 O 86.2 176.0 79.0 45.4 REMARK 620 6 HOH B2235 O 110.1 91.1 148.5 108.1 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1276 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2191 O REMARK 620 2 HOH B2259 O 71.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1276 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BE5 RELATED DB: PDB REMARK 900 V. CHOLERA BIOFILM SCAFFOLDING PROTEIN RBMA REMARK 900 RELATED ID: 4BEI RELATED DB: PDB REMARK 900 V. CHOLERA BIOFILM SCAFFOLDING PROTEIN RBMA IN COMPLEX WITH 18- REMARK 900 CROWN-6 DBREF 4BE6 A 31 271 UNP C3NSJ9 C3NSJ9_VIBCJ 31 271 DBREF 4BE6 B 31 271 UNP C3NSJ9 C3NSJ9_VIBCJ 31 271 SEQADV 4BE6 MET A 10 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 GLY A 11 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 SER A 12 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 SER A 13 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS A 14 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS A 15 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS A 16 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS A 17 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS A 18 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS A 19 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 SER A 20 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 SER A 21 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 GLY A 22 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 LEU A 23 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 VAL A 24 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 PRO A 25 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 ARG A 26 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 GLY A 27 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 SER A 28 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS A 29 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 MET A 30 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 MET B 10 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 GLY B 11 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 SER B 12 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 SER B 13 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS B 14 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS B 15 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS B 16 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS B 17 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS B 18 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS B 19 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 SER B 20 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 SER B 21 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 GLY B 22 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 LEU B 23 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 VAL B 24 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 PRO B 25 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 ARG B 26 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 GLY B 27 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 SER B 28 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 HIS B 29 UNP C3NSJ9 EXPRESSION TAG SEQADV 4BE6 MET B 30 UNP C3NSJ9 EXPRESSION TAG SEQRES 1 A 262 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 262 LEU VAL PRO ARG GLY SER HIS MET GLU VAL ASP CYS GLU SEQRES 3 A 262 LEU GLN PRO VAL ILE GLU ALA ASN LEU SER LEU ASN GLN SEQRES 4 A 262 ASN GLN LEU ALA SER ASN GLY GLY TYR ILE SER SER GLN SEQRES 5 A 262 LEU GLY ILE ARG ASN GLU SER CYS GLU THR VAL LYS PHE SEQRES 6 A 262 LYS TYR TRP LEU SER ILE LYS GLY PRO GLU GLY ILE TYR SEQRES 7 A 262 PHE PRO ALA LYS ALA VAL VAL GLY VAL ASP THR ALA GLN SEQRES 8 A 262 GLN GLU SER ASP ALA LEU THR ASP GLY ARG MET LEU ASN SEQRES 9 A 262 VAL THR ARG GLY PHE TRP VAL PRO GLU TYR MET ALA ASP SEQRES 10 A 262 GLY LYS TYR THR VAL SER LEU GLN VAL VAL ALA GLU ASN SEQRES 11 A 262 GLY LYS VAL PHE LYS ALA ASN GLN GLU PHE VAL LYS GLY SEQRES 12 A 262 VAL ASP LEU ASN SER LEU PRO GLU LEU ASN GLY LEU THR SEQRES 13 A 262 ILE ASP ILE LYS ASN GLN PHE GLY ILE ASN SER VAL GLU SEQRES 14 A 262 SER THR GLY GLY PHE VAL PRO PHE THR VAL ASP LEU ASN SEQRES 15 A 262 ASN GLY ARG GLU GLY GLU ALA ASN VAL GLU PHE TRP MET SEQRES 16 A 262 THR ALA VAL GLY PRO ASP GLY LEU ILE ILE PRO VAL ASN SEQRES 17 A 262 ALA ARG GLU LYS TRP VAL ILE ALA SER GLY ASP THR TYR SEQRES 18 A 262 SER LYS VAL ARG GLY ILE ASN PHE ASP LYS SER TYR PRO SEQRES 19 A 262 ALA GLY GLU TYR THR ILE ASN ALA GLN VAL VAL ASP ILE SEQRES 20 A 262 VAL SER GLY GLU ARG VAL GLU GLN SER MET THR VAL VAL SEQRES 21 A 262 LYS LYS SEQRES 1 B 262 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 262 LEU VAL PRO ARG GLY SER HIS MET GLU VAL ASP CYS GLU SEQRES 3 B 262 LEU GLN PRO VAL ILE GLU ALA ASN LEU SER LEU ASN GLN SEQRES 4 B 262 ASN GLN LEU ALA SER ASN GLY GLY TYR ILE SER SER GLN SEQRES 5 B 262 LEU GLY ILE ARG ASN GLU SER CYS GLU THR VAL LYS PHE SEQRES 6 B 262 LYS TYR TRP LEU SER ILE LYS GLY PRO GLU GLY ILE TYR SEQRES 7 B 262 PHE PRO ALA LYS ALA VAL VAL GLY VAL ASP THR ALA GLN SEQRES 8 B 262 GLN GLU SER ASP ALA LEU THR ASP GLY ARG MET LEU ASN SEQRES 9 B 262 VAL THR ARG GLY PHE TRP VAL PRO GLU TYR MET ALA ASP SEQRES 10 B 262 GLY LYS TYR THR VAL SER LEU GLN VAL VAL ALA GLU ASN SEQRES 11 B 262 GLY LYS VAL PHE LYS ALA ASN GLN GLU PHE VAL LYS GLY SEQRES 12 B 262 VAL ASP LEU ASN SER LEU PRO GLU LEU ASN GLY LEU THR SEQRES 13 B 262 ILE ASP ILE LYS ASN GLN PHE GLY ILE ASN SER VAL GLU SEQRES 14 B 262 SER THR GLY GLY PHE VAL PRO PHE THR VAL ASP LEU ASN SEQRES 15 B 262 ASN GLY ARG GLU GLY GLU ALA ASN VAL GLU PHE TRP MET SEQRES 16 B 262 THR ALA VAL GLY PRO ASP GLY LEU ILE ILE PRO VAL ASN SEQRES 17 B 262 ALA ARG GLU LYS TRP VAL ILE ALA SER GLY ASP THR TYR SEQRES 18 B 262 SER LYS VAL ARG GLY ILE ASN PHE ASP LYS SER TYR PRO SEQRES 19 B 262 ALA GLY GLU TYR THR ILE ASN ALA GLN VAL VAL ASP ILE SEQRES 20 B 262 VAL SER GLY GLU ARG VAL GLU GLN SER MET THR VAL VAL SEQRES 21 B 262 LYS LYS HET K B1272 1 HET GOL B1273 6 HET GOL B1274 6 HET GOL B1275 6 HET CA B1276 1 HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 K K 1+ FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 CA CA 2+ FORMUL 8 HOH *537(H2 O) HELIX 1 1 PRO B 209 GLY B 211 5 3 SHEET 1 AA 3 GLU A 41 LEU A 46 0 SHEET 2 AA 3 GLY A 56 ARG A 65 -1 O GLN A 61 N SER A 45 SHEET 3 AA 3 MET A 111 VAL A 120 -1 O LEU A 112 N ILE A 64 SHEET 1 AB 5 GLN A 50 LEU A 51 0 SHEET 2 AB 5 VAL A 142 LYS A 151 1 O VAL A 150 N LEU A 51 SHEET 3 AB 5 GLY A 127 ALA A 137 -1 O GLY A 127 N LYS A 151 SHEET 4 AB 5 LYS A 73 LYS A 81 -1 O LYS A 75 N VAL A 136 SHEET 5 AB 5 TYR A 87 ASP A 97 -1 O PHE A 88 N ILE A 80 SHEET 1 AC 4 GLU A 160 LEU A 161 0 SHEET 2 AC 4 LEU A 164 ASN A 170 -1 O LEU A 164 N LEU A 161 SHEET 3 AC 4 GLY A 182 ASN A 192 -1 O THR A 187 N LYS A 169 SHEET 4 AC 4 THR A 229 PHE A 238 -1 O TYR A 230 N LEU A 190 SHEET 1 AD 5 SER A 176 VAL A 177 0 SHEET 2 AD 5 GLU A 260 LYS A 270 1 O VAL A 269 N VAL A 177 SHEET 3 AD 5 GLY A 245 ASP A 255 -1 O GLY A 245 N LYS A 270 SHEET 4 AD 5 ALA A 198 VAL A 207 -1 O GLU A 201 N VAL A 254 SHEET 5 AD 5 ILE A 213 ILE A 224 -1 O ILE A 214 N ALA A 206 SHEET 1 BA 3 GLU B 41 LEU B 46 0 SHEET 2 BA 3 GLY B 56 ARG B 65 -1 O GLN B 61 N SER B 45 SHEET 3 BA 3 MET B 111 VAL B 120 -1 O LEU B 112 N ILE B 64 SHEET 1 BB 5 GLN B 50 LEU B 51 0 SHEET 2 BB 5 VAL B 142 LYS B 151 1 O VAL B 150 N LEU B 51 SHEET 3 BB 5 GLY B 127 ALA B 137 -1 O GLY B 127 N LYS B 151 SHEET 4 BB 5 VAL B 72 LYS B 81 -1 O LYS B 75 N VAL B 136 SHEET 5 BB 5 TYR B 87 PRO B 89 -1 O PHE B 88 N ILE B 80 SHEET 1 BC 5 GLN B 50 LEU B 51 0 SHEET 2 BC 5 VAL B 142 LYS B 151 1 O VAL B 150 N LEU B 51 SHEET 3 BC 5 GLY B 127 ALA B 137 -1 O GLY B 127 N LYS B 151 SHEET 4 BC 5 VAL B 72 LYS B 81 -1 O LYS B 75 N VAL B 136 SHEET 5 BC 5 ASP B 104 LEU B 106 -1 O ASP B 104 N PHE B 74 SHEET 1 BD 2 TYR B 87 PRO B 89 0 SHEET 2 BD 2 VAL B 72 LYS B 81 -1 O ILE B 80 N PHE B 88 SHEET 1 BE 4 GLU B 160 LEU B 161 0 SHEET 2 BE 4 LEU B 164 ASN B 170 -1 O LEU B 164 N LEU B 161 SHEET 3 BE 4 GLY B 182 ASN B 192 -1 O THR B 187 N LYS B 169 SHEET 4 BE 4 THR B 229 PHE B 238 -1 O TYR B 230 N LEU B 190 SHEET 1 BF 5 SER B 176 VAL B 177 0 SHEET 2 BF 5 ARG B 261 LYS B 270 1 O VAL B 269 N VAL B 177 SHEET 3 BF 5 GLY B 245 ASP B 255 -1 O GLY B 245 N LYS B 270 SHEET 4 BF 5 ALA B 198 VAL B 207 -1 O GLU B 201 N VAL B 254 SHEET 5 BF 5 ILE B 213 ILE B 224 -1 O ILE B 214 N ALA B 206 LINK O HOH A2109 K K B1272 1555 1555 2.62 LINK O HOH A2191 CA CA B1276 8555 1555 2.73 LINK O HOH A2244 K K B1272 1555 1555 2.70 LINK OD1 ASP B 210 K K B1272 1555 1555 2.66 LINK OD2 ASP B 210 K K B1272 1555 1555 2.94 LINK K K B1272 O HOH B2204 1555 1555 2.89 LINK K K B1272 O HOH B2235 1555 1555 2.65 LINK CA CA B1276 O HOH B2259 1555 1555 3.01 SITE 1 AC1 5 HOH A2109 HOH A2244 ASP B 210 HOH B2204 SITE 2 AC1 5 HOH B2235 SITE 1 AC2 10 PHE A 183 ARG A 234 GLY A 235 ILE A 236 SITE 2 AC2 10 ASN A 237 HOH A2235 GLN B 100 GLN B 101 SITE 3 AC2 10 PHE B 172 HOH B2256 SITE 1 AC3 9 HOH A2210 HOH A2212 TYR B 57 ALA B 92 SITE 2 AC3 9 VAL B 93 TRP B 119 HOH B2034 HOH B2074 SITE 3 AC3 9 HOH B2258 SITE 1 AC4 5 PRO A 89 ALA A 90 HOH A2062 HOH A2063 SITE 2 AC4 5 ARG B 219 SITE 1 AC5 6 ASN A 199 HOH A2191 GLN B 48 GLY B 56 SITE 2 AC5 6 TYR B 57 HOH B2259 CRYST1 118.220 118.220 104.984 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008459 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009525 0.00000