HEADER ISOMERASE 15-MAR-13 4BF8 TITLE FPR4 PPI DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FPR4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PEPTIDYL PROLINE ISOMERASE (PPI) DOMAIN, RESIDUES 280-392; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: C-TERMINAL PEPTIDYL PROLYL CIS-TRANS ISOMERASE DOMAIN COMPND 8 FROM YEAST FPR4P SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSY; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET-9D KEYWDS ISOMERASE, PROLINE ISOMERIZATION, FKBP, HISTONE CHAPERONE EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR Y.MONNEAU,C.MACKERETH REVDAT 5 14-JUN-23 4BF8 1 REMARK REVDAT 4 04-MAY-16 4BF8 1 ATOM TER MASTER REVDAT 3 25-SEP-13 4BF8 1 JRNL REVDAT 2 07-AUG-13 4BF8 1 JRNL REVDAT 1 31-JUL-13 4BF8 0 JRNL AUTH Y.R.MONNEAU,H.SOUFARI,C.J.NELSON,C.D.MACKERETH JRNL TITL STRUCTURE AND ACTIVITY OF THE PEPTIDYL-PROLYL ISOMERASE JRNL TITL 2 DOMAIN FROM THE HISTONE CHAPERONE FPR4 TOWARDS HISTONE H3 JRNL TITL 3 PROLINE ISOMERIZATION JRNL REF J.BIOL.CHEM. V. 288 25826 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23888048 JRNL DOI 10.1074/JBC.M113.479964 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290056157. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 292.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1H; 15N-NOESY (120MS MIXING REMARK 210 TIME); 15N-TROSY (RDC); 13C- REMARK 210 NOESY (120 MS MIXING TIME) REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY REMARK 210 METHOD USED : ARIA1.2 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE CALCULATION USED A COMBINATION OF DISTANCE REMARK 210 RESTRAINTS (UNAMBIGUOUS AND AMBIGUOUS), DIHEDRAL ANGLE REMARK 210 RESTRAINTS, HYDROGEN-BOND RESTRAINTS AND RESIDUAL DIPOLAR REMARK 210 COUPLING RESTRAINTS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 284 OD2 ASP A 294 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 280 84.14 56.51 REMARK 500 1 LEU A 286 -161.83 -108.32 REMARK 500 1 LYS A 325 135.81 -174.44 REMARK 500 1 THR A 327 -46.80 -140.63 REMARK 500 1 ALA A 367 -110.81 -125.39 REMARK 500 2 THR A 327 -33.92 -163.07 REMARK 500 2 ALA A 367 -125.09 -119.52 REMARK 500 3 MET A 278 96.29 66.54 REMARK 500 3 LYS A 282 23.47 -156.97 REMARK 500 3 THR A 327 -45.04 -164.05 REMARK 500 3 ALA A 367 -105.30 -116.58 REMARK 500 4 LYS A 282 -166.71 -75.30 REMARK 500 4 THR A 327 -42.51 -161.84 REMARK 500 4 TYR A 368 -32.46 -165.46 REMARK 500 4 ASN A 379 -8.16 73.66 REMARK 500 5 ALA A 279 78.00 62.22 REMARK 500 5 LYS A 280 161.23 70.67 REMARK 500 5 LYS A 325 143.48 -176.55 REMARK 500 5 THR A 327 -55.39 -150.70 REMARK 500 5 ALA A 367 -116.43 -127.56 REMARK 500 6 THR A 327 -40.83 -142.16 REMARK 500 6 ALA A 367 -109.60 -127.06 REMARK 500 7 LYS A 280 140.82 70.83 REMARK 500 7 THR A 327 -38.89 -157.00 REMARK 500 7 ALA A 367 -106.04 -122.24 REMARK 500 8 MET A 278 -1.93 69.06 REMARK 500 8 LEU A 286 -169.50 -101.78 REMARK 500 8 ARG A 295 -60.30 -105.76 REMARK 500 8 THR A 327 -49.44 -160.73 REMARK 500 8 ALA A 367 -119.30 -110.76 REMARK 500 9 ALA A 277 87.14 57.46 REMARK 500 9 LYS A 280 90.94 69.65 REMARK 500 9 LEU A 286 -166.71 -105.62 REMARK 500 9 THR A 327 -43.49 -162.26 REMARK 500 9 ALA A 350 96.84 -65.79 REMARK 500 9 ALA A 367 -109.22 -120.10 REMARK 500 10 LYS A 280 133.32 70.98 REMARK 500 10 LEU A 286 -164.56 -108.54 REMARK 500 10 THR A 327 -47.17 -148.96 REMARK 500 10 ALA A 367 -108.05 -126.59 REMARK 500 11 MET A 278 101.23 61.53 REMARK 500 11 LYS A 280 108.53 -167.37 REMARK 500 11 THR A 327 -58.79 -155.29 REMARK 500 11 LYS A 328 92.01 -68.05 REMARK 500 11 ALA A 367 -107.57 -129.23 REMARK 500 11 ASN A 379 32.16 71.97 REMARK 500 12 ALA A 279 153.18 65.78 REMARK 500 12 LYS A 280 127.32 67.70 REMARK 500 12 THR A 327 -69.25 -149.76 REMARK 500 12 LYS A 328 97.28 -68.41 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17713 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONTAINS N-TERMINAL GLY-ALA-MET-ALA- RESIDUES FOLLOWING REMARK 999 CLEAVAGE OF THE HIS6-TAG BY TEV PROTEAS DBREF 4BF8 A 280 392 UNP Q06205 FKBP4_YEAST 280 392 SEQADV 4BF8 GLY A 276 UNP Q06205 EXPRESSION TAG SEQADV 4BF8 ALA A 277 UNP Q06205 EXPRESSION TAG SEQADV 4BF8 MET A 278 UNP Q06205 EXPRESSION TAG SEQADV 4BF8 ALA A 279 UNP Q06205 EXPRESSION TAG SEQRES 1 A 117 GLY ALA MET ALA LYS PRO LYS THR LYS LEU LEU GLU GLY SEQRES 2 A 117 GLY ILE ILE ILE GLU ASP ARG VAL THR GLY LYS GLY PRO SEQRES 3 A 117 HIS ALA LYS LYS GLY THR ARG VAL GLY MET ARG TYR VAL SEQRES 4 A 117 GLY LYS LEU LYS ASN GLY LYS VAL PHE ASP LYS ASN THR SEQRES 5 A 117 LYS GLY LYS PRO PHE VAL PHE LYS LEU GLY GLN GLY GLU SEQRES 6 A 117 VAL ILE LYS GLY TRP ASP ILE GLY VAL ALA GLY MET ALA SEQRES 7 A 117 VAL GLY GLY GLU ARG ARG ILE VAL ILE PRO ALA PRO TYR SEQRES 8 A 117 ALA TYR GLY LYS GLN ALA LEU PRO GLY ILE PRO ALA ASN SEQRES 9 A 117 SER GLU LEU THR PHE ASP VAL LYS LEU VAL SER MET LYS HELIX 1 1 ILE A 342 VAL A 349 1 8 HELIX 2 2 PRO A 363 ALA A 367 5 5 SHEET 1 AA 6 THR A 283 LEU A 285 0 SHEET 2 AA 6 ILE A 291 VAL A 296 -1 O ILE A 292 N LYS A 284 SHEET 3 AA 6 GLU A 357 ILE A 362 -1 O GLU A 357 N VAL A 296 SHEET 4 AA 6 LEU A 382 MET A 391 -1 O LEU A 382 N ILE A 362 SHEET 5 AA 6 ARG A 308 LEU A 317 -1 O GLY A 310 N VAL A 389 SHEET 6 AA 6 VAL A 322 ASN A 326 -1 N PHE A 323 O GLY A 315 SHEET 1 AB 6 THR A 283 LEU A 285 0 SHEET 2 AB 6 ILE A 291 VAL A 296 -1 O ILE A 292 N LYS A 284 SHEET 3 AB 6 GLU A 357 ILE A 362 -1 O GLU A 357 N VAL A 296 SHEET 4 AB 6 LEU A 382 MET A 391 -1 O LEU A 382 N ILE A 362 SHEET 5 AB 6 ARG A 308 LEU A 317 -1 O GLY A 310 N VAL A 389 SHEET 6 AB 6 PHE A 332 LYS A 335 1 O PHE A 332 N MET A 311 SHEET 1 AC 2 VAL A 322 ASN A 326 0 SHEET 2 AC 2 ARG A 308 LEU A 317 -1 O TYR A 313 N ASN A 326 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1