HEADER IMMUNE SYSTEM 19-MAR-13 4BFI TITLE STRUCTURE OF THE COMPLEX OF THE EXTRACELLULAR PORTIONS OF MOUSE CD200R TITLE 2 AND MOUSE CD200 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL SURFACE GLYCOPROTEIN CD200 RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 26-228; COMPND 5 SYNONYM: CD200 CELL SURFACE GLYCOPROTEIN RECEPTOR, CELL SURFACE COMPND 6 GLYCOPROTEIN OX2 RECEPTOR 1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: OX-2 MEMBRANE GLYCOPROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 31-232; COMPND 12 SYNONYM: MRC OX-2 ANTIGEN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: LEC3.2.8.1; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: CHO; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PEE14; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 19 EXPRESSION_SYSTEM_VARIANT: LEC3.2.8.1; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: CHO; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PEE14 KEYWDS IMMUNE SYSTEM, PAIRED RECEPTOR, IG DOMAINS, VIRAL MIMICRY, LEUKAEMIA KEYWDS 2 MIMICRY, LEUKAEMIA EXPDTA X-RAY DIFFRACTION AUTHOR D.HATHERLEY,S.M.LEA,S.JOHNSON,A.N.BARCLAY REVDAT 5 20-DEC-23 4BFI 1 HETSYN REVDAT 4 29-JUL-20 4BFI 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 29-MAY-13 4BFI 1 JRNL REVDAT 2 08-MAY-13 4BFI 1 JRNL REVDAT 1 01-MAY-13 4BFI 0 JRNL AUTH D.HATHERLEY,S.M.LEA,S.JOHNSON,A.N.BARCLAY JRNL TITL STRUCTURES OF CD200/CD200 RECEPTOR FAMILY AND IMPLICATIONS JRNL TITL 2 FOR TOPOLOGY, REGULATION, AND EVOLUTION JRNL REF STRUCTURE V. 21 820 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23602662 JRNL DOI 10.1016/J.STR.2013.03.008 REMARK 2 REMARK 2 RESOLUTION. 3.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 15284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 819 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 990 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 165 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.92000 REMARK 3 B22 (A**2) : 3.92000 REMARK 3 B33 (A**2) : -7.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.756 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.378 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.285 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.879 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3274 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4476 ; 1.404 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 6.298 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;40.011 ;25.246 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;17.487 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.648 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2387 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290056210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XIA2 REMARK 200 DATA SCALING SOFTWARE : XSCALE XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16034 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.220 REMARK 200 RESOLUTION RANGE LOW (A) : 86.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BFG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M IMIDAZOLE PH7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.04000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.08500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.06000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.08500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.02000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.08500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.08500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.06000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.08500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.08500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.02000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 29.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 5 REMARK 465 GLN A 6 REMARK 465 THR A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 ASN A 10 REMARK 465 ASN A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 ARG A 206 REMARK 465 GLY A 207 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 THR A 210 REMARK 465 ARG A 211 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 GLN B 1 REMARK 465 THR B 204 REMARK 465 ARG B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 20 C2 NAG A 2000 2.06 REMARK 500 ND2 ASN B 73 C2 NAG B 730 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 174 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 85 25.15 47.20 REMARK 500 ALA A 144 57.72 39.52 REMARK 500 ASN A 168 36.26 -80.64 REMARK 500 ASN A 182 -105.94 -150.21 REMARK 500 THR A 195 1.65 -68.06 REMARK 500 VAL B 40 -144.93 72.10 REMARK 500 ARG B 63 -31.04 -131.04 REMARK 500 SER B 98 85.07 -153.06 REMARK 500 GLN B 99 -129.13 38.08 REMARK 500 PHE B 122 -128.55 -129.23 REMARK 500 ASP B 124 -44.71 66.05 REMARK 500 THR B 147 -51.66 63.26 REMARK 500 ILE B 149 159.46 77.24 REMARK 500 PRO B 174 76.21 -65.60 REMARK 500 LYS B 175 -81.94 -136.92 REMARK 500 SER B 198 -166.87 -111.24 REMARK 500 LEU B 199 109.89 -167.97 REMARK 500 LYS B 201 -86.99 -100.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BFE RELATED DB: PDB REMARK 900 STRUCTURE OF THE EXTRACELLULAR PORTION OF MOUSE CD200RLA REMARK 900 RELATED ID: 4BFG RELATED DB: PDB REMARK 900 STRUCTURE OF THE EXTRACELLULAR PORTION OF MOUSE CD200R REMARK 999 REMARK 999 SEQUENCE REMARK 999 NUMBERING IN THE PDB IS BASED ON THE MATURE SEQUENCE AS REMARK 999 DETERMINED BY N-TERMINAL SEQUENCING. DBREF 4BFI A 2 204 UNP Q9ES57 MO2R1_MOUSE 26 228 DBREF 4BFI B 1 202 UNP O54901 OX2G_MOUSE 31 232 SEQADV 4BFI GLY A 205 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI ARG A 206 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI GLY A 207 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI GLY A 208 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI SER A 209 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI THR A 210 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI ARG A 211 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI HIS A 212 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI HIS A 213 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI HIS A 214 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI HIS A 215 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI HIS A 216 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI HIS A 217 UNP Q9ES57 EXPRESSION TAG SEQADV 4BFI SER B 203 UNP O54901 EXPRESSION TAG SEQADV 4BFI THR B 204 UNP O54901 EXPRESSION TAG SEQADV 4BFI ARG B 205 UNP O54901 EXPRESSION TAG SEQADV 4BFI HIS B 206 UNP O54901 EXPRESSION TAG SEQADV 4BFI HIS B 207 UNP O54901 EXPRESSION TAG SEQADV 4BFI HIS B 208 UNP O54901 EXPRESSION TAG SEQADV 4BFI HIS B 209 UNP O54901 EXPRESSION TAG SEQADV 4BFI HIS B 210 UNP O54901 EXPRESSION TAG SEQADV 4BFI HIS B 211 UNP O54901 EXPRESSION TAG SEQRES 1 A 216 THR ASP LYS ASN GLN THR THR GLN ASN ASN SER SER SER SEQRES 2 A 216 PRO LEU THR GLN VAL ASN THR THR VAL SER VAL GLN ILE SEQRES 3 A 216 GLY THR LYS ALA LEU LEU CYS CYS PHE SER ILE PRO LEU SEQRES 4 A 216 THR LYS ALA VAL LEU ILE THR TRP ILE ILE LYS LEU ARG SEQRES 5 A 216 GLY LEU PRO SER CYS THR ILE ALA TYR LYS VAL ASP THR SEQRES 6 A 216 LYS THR ASN GLU THR SER CYS LEU GLY ARG ASN ILE THR SEQRES 7 A 216 TRP ALA SER THR PRO ASP HIS SER PRO GLU LEU GLN ILE SEQRES 8 A 216 SER ALA VAL THR LEU GLN HIS GLU GLY THR TYR THR CYS SEQRES 9 A 216 GLU THR VAL THR PRO GLU GLY ASN PHE GLU LYS ASN TYR SEQRES 10 A 216 ASP LEU GLN VAL LEU VAL PRO PRO GLU VAL THR TYR PHE SEQRES 11 A 216 PRO GLU LYS ASN ARG SER ALA VAL CYS GLU ALA MET ALA SEQRES 12 A 216 GLY LYS PRO ALA ALA GLN ILE SER TRP SER PRO ASP GLY SEQRES 13 A 216 ASP CYS VAL THR THR SER GLU SER HIS SER ASN GLY THR SEQRES 14 A 216 VAL THR VAL ARG SER THR CYS HIS TRP GLU GLN ASN ASN SEQRES 15 A 216 VAL SER ASP VAL SER CYS ILE VAL SER HIS LEU THR GLY SEQRES 16 A 216 ASN GLN SER LEU SER ILE GLU LEU GLY ARG GLY GLY SER SEQRES 17 A 216 THR ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 211 GLN VAL GLU VAL VAL THR GLN ASP GLU ARG LYS ALA LEU SEQRES 2 B 211 HIS THR THR ALA SER LEU ARG CYS SER LEU LYS THR SER SEQRES 3 B 211 GLN GLU PRO LEU ILE VAL THR TRP GLN LYS LYS LYS ALA SEQRES 4 B 211 VAL SER PRO GLU ASN MET VAL THR TYR SER LYS THR HIS SEQRES 5 B 211 GLY VAL VAL ILE GLN PRO ALA TYR LYS ASP ARG ILE ASN SEQRES 6 B 211 VAL THR GLU LEU GLY LEU TRP ASN SER SER ILE THR PHE SEQRES 7 B 211 TRP ASN THR THR LEU GLU ASP GLU GLY CYS TYR MET CYS SEQRES 8 B 211 LEU PHE ASN THR PHE GLY SER GLN LYS VAL SER GLY THR SEQRES 9 B 211 ALA CYS LEU THR LEU TYR VAL GLN PRO ILE VAL HIS LEU SEQRES 10 B 211 HIS TYR ASN TYR PHE GLU ASP HIS LEU ASN ILE THR CYS SEQRES 11 B 211 SER ALA THR ALA ARG PRO ALA PRO ALA ILE SER TRP LYS SEQRES 12 B 211 GLY THR GLY THR GLY ILE GLU ASN SER THR GLU SER HIS SEQRES 13 B 211 PHE HIS SER ASN GLY THR THR SER VAL THR SER ILE LEU SEQRES 14 B 211 ARG VAL LYS ASP PRO LYS THR GLN VAL GLY LYS GLU VAL SEQRES 15 B 211 ILE CYS GLN VAL LEU TYR LEU GLY ASN VAL ILE ASP TYR SEQRES 16 B 211 LYS GLN SER LEU ASP LYS GLY SER THR ARG HIS HIS HIS SEQRES 17 B 211 HIS HIS HIS MODRES 4BFI ASN A 20 ASN GLYCOSYLATION SITE MODRES 4BFI ASN A 69 ASN GLYCOSYLATION SITE MODRES 4BFI ASN A 77 ASN GLYCOSYLATION SITE MODRES 4BFI ASN A 168 ASN GLYCOSYLATION SITE MODRES 4BFI ASN A 197 ASN GLYCOSYLATION SITE MODRES 4BFI ASN B 65 ASN GLYCOSYLATION SITE MODRES 4BFI ASN B 73 ASN GLYCOSYLATION SITE MODRES 4BFI ASN B 80 ASN GLYCOSYLATION SITE MODRES 4BFI ASN B 127 ASN GLYCOSYLATION SITE MODRES 4BFI ASN B 151 ASN GLYCOSYLATION SITE MODRES 4BFI ASN B 160 ASN GLYCOSYLATION SITE HET NAG A 690 14 HET NAG A 770 14 HET EDO A1206 4 HET CYS A1207 7 HET NAG A1680 14 HET NAG A1970 14 HET NAG A2000 14 HET NAG B 650 14 HET NAG B 730 14 HET NAG B 800 14 HET NAG B1270 14 HET NAG B1510 14 HET NAG B1600 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM CYS CYSTEINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 11(C8 H15 N O6) FORMUL 5 EDO C2 H6 O2 FORMUL 6 CYS C3 H7 N O2 S FORMUL 16 HOH *27(H2 O) HELIX 1 1 THR A 96 HIS A 99 5 4 HELIX 2 2 PRO B 58 LYS B 61 5 4 HELIX 3 3 THR B 82 GLU B 86 5 5 SHEET 1 AA 6 GLN A 18 GLN A 26 0 SHEET 2 AA 6 GLY A 112 LEU A 123 1 O GLU A 115 N VAL A 19 SHEET 3 AA 6 GLY A 101 THR A 109 -1 O GLY A 101 N LEU A 120 SHEET 4 AA 6 LEU A 45 LEU A 52 -1 O LEU A 45 N VAL A 108 SHEET 5 AA 6 THR A 59 LYS A 63 -1 O ILE A 60 N TRP A 48 SHEET 6 AA 6 THR A 68 THR A 71 -1 O THR A 68 N LYS A 63 SHEET 1 AB 3 ALA A 31 LEU A 33 0 SHEET 2 AB 3 HIS A 86 ILE A 92 -1 O LEU A 90 N LEU A 33 SHEET 3 AB 3 THR A 79 THR A 83 -1 O THR A 79 N GLN A 91 SHEET 1 AC 4 GLU A 127 GLU A 133 0 SHEET 2 AC 4 SER A 137 GLY A 145 -1 O SER A 137 N GLU A 133 SHEET 3 AC 4 VAL A 171 HIS A 178 -1 O VAL A 171 N GLY A 145 SHEET 4 AC 4 ASP A 158 SER A 165 -1 O ASP A 158 N HIS A 178 SHEET 1 AD 3 GLN A 150 SER A 154 0 SHEET 2 AD 3 ASP A 186 SER A 192 -1 O SER A 188 N SER A 154 SHEET 3 AD 3 GLN A 198 GLU A 203 -1 O GLN A 198 N VAL A 191 SHEET 1 BA 4 VAL B 4 THR B 6 0 SHEET 2 BA 4 ALA B 17 LEU B 23 -1 O SER B 22 N VAL B 5 SHEET 3 BA 4 ASN B 73 PHE B 78 -1 O SER B 74 N CYS B 21 SHEET 4 BA 4 ILE B 64 GLU B 68 -1 O ASN B 65 N THR B 77 SHEET 1 BB 2 GLU B 9 ALA B 12 0 SHEET 2 BB 2 THR B 104 TYR B 121 -1 O CYS B 106 N GLU B 9 SHEET 1 BC 5 GLY B 53 ILE B 56 0 SHEET 2 BC 5 GLU B 43 SER B 49 -1 O THR B 47 N VAL B 55 SHEET 3 BC 5 ILE B 31 LYS B 36 -1 O VAL B 32 N TYR B 48 SHEET 4 BC 5 GLY B 87 ASN B 94 -1 O MET B 90 N GLN B 35 SHEET 5 BC 5 LYS B 100 VAL B 101 -1 O VAL B 101 N PHE B 93 SHEET 1 BD 8 GLY B 53 ILE B 56 0 SHEET 2 BD 8 GLU B 43 SER B 49 -1 O THR B 47 N VAL B 55 SHEET 3 BD 8 ILE B 31 LYS B 36 -1 O VAL B 32 N TYR B 48 SHEET 4 BD 8 GLY B 87 ASN B 94 -1 O MET B 90 N GLN B 35 SHEET 5 BD 8 THR B 104 TYR B 121 -1 O ALA B 105 N TYR B 89 SHEET 6 BD 8 LEU B 126 ARG B 135 -1 O ASN B 127 N ASN B 120 SHEET 7 BD 8 THR B 163 ARG B 170 -1 O THR B 163 N ALA B 134 SHEET 8 BD 8 GLU B 150 PHE B 157 -1 O GLU B 150 N ARG B 170 SHEET 1 BE 6 GLY B 53 ILE B 56 0 SHEET 2 BE 6 GLU B 43 SER B 49 -1 O THR B 47 N VAL B 55 SHEET 3 BE 6 ILE B 31 LYS B 36 -1 O VAL B 32 N TYR B 48 SHEET 4 BE 6 GLY B 87 ASN B 94 -1 O MET B 90 N GLN B 35 SHEET 5 BE 6 THR B 104 TYR B 121 -1 O ALA B 105 N TYR B 89 SHEET 6 BE 6 GLU B 9 ALA B 12 -1 O GLU B 9 N THR B 108 SHEET 1 BF 2 LYS B 100 VAL B 101 0 SHEET 2 BF 2 GLY B 87 ASN B 94 -1 O PHE B 93 N VAL B 101 SHEET 1 BG 3 ALA B 139 TRP B 142 0 SHEET 2 BG 3 VAL B 182 TYR B 188 -1 O GLN B 185 N SER B 141 SHEET 3 BG 3 ASN B 191 GLN B 197 -1 O ASN B 191 N TYR B 188 SSBOND 1 CYS A 34 CYS A 1207 1555 1555 2.04 SSBOND 2 CYS A 35 CYS A 105 1555 1555 2.05 SSBOND 3 CYS A 58 CYS A 73 1555 1555 2.04 SSBOND 4 CYS A 140 CYS A 189 1555 1555 2.03 SSBOND 5 CYS A 159 CYS A 177 1555 1555 2.03 SSBOND 6 CYS B 21 CYS B 91 1555 1555 2.03 SSBOND 7 CYS B 88 CYS B 106 1555 1555 2.05 SSBOND 8 CYS B 130 CYS B 184 1555 1555 2.04 LINK ND2 ASN A 20 C1 NAG A2000 1555 1555 1.43 LINK ND2 ASN A 69 C1 NAG A 690 1555 1555 1.44 LINK ND2 ASN A 77 C1 NAG A 770 1555 1555 1.44 LINK ND2 ASN A 168 C1 NAG A1680 1555 1555 1.44 LINK ND2 ASN A 197 C1 NAG A1970 1555 1555 1.44 LINK ND2 ASN B 65 C1 NAG B 650 1555 1555 1.44 LINK ND2 ASN B 73 C1 NAG B 730 1555 1555 1.44 LINK ND2 ASN B 80 C1 NAG B 800 1555 1555 1.44 LINK ND2 ASN B 127 C1 NAG B1270 1555 1555 1.46 LINK ND2 ASN B 151 C1 NAG B1510 1555 1555 1.45 LINK ND2 ASN B 160 C1 NAG B1600 1555 1555 1.43 CISPEP 1 LYS A 146 PRO A 147 0 -6.95 CISPEP 2 SER A 154 PRO A 155 0 -0.34 CISPEP 3 ARG B 135 PRO B 136 0 2.12 CRYST1 128.170 128.170 116.080 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008615 0.00000