HEADER TRANSFERASE 22-MAR-13 4BG2 TITLE X-RAY CRYSTAL STRUCTURE OF PATF FROM PROCHLORON DIDEMNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PATF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-320; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROCHLORON DIDEMNI; SOURCE 3 ORGANISM_TAXID: 1216; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PJEXPRESS411 KEYWDS TRANSFERASE, PATELLAMIDE, CYANOBACTINS, NATURAL PRODUCTS, PRENYL KEYWDS 2 TRANSFERASES EXPDTA X-RAY DIFFRACTION AUTHOR A.F.BENT,J.KOEHNKE,W.E.HOUSSEN,M.C.M.SMITH,M.JASPARS,J.H.NAISMITH REVDAT 3 06-NOV-13 4BG2 1 AUTHOR REVDAT 2 12-JUN-13 4BG2 1 JRNL REVDAT 1 03-APR-13 4BG2 0 JRNL AUTH A.F.BENT,J.KOEHNKE,W.E.HOUSSEN,M.C.M.SMITH,M.JASPARS, JRNL AUTH 2 J.H.NAISMITH JRNL TITL STRUCTURE OF PATF FROM PROCHLORON DIDEMNI. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 618 2013 JRNL REFN ISSN 1744-3091 JRNL PMID 23722837 JRNL DOI 10.1107/S1744309113012931 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 97.72 REMARK 3 NUMBER OF REFLECTIONS : 27836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.19157 REMARK 3 R VALUE (WORKING SET) : 0.18996 REMARK 3 FREE R VALUE : 0.22092 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1489 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.130 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.185 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.228 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.246 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4833 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.791 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61 REMARK 3 B22 (A**2) : -1.90 REMARK 3 B33 (A**2) : 0.90 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -0.25 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.326 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.011 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4970 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4665 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6709 ; 1.314 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10722 ; 0.932 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 599 ; 6.000 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;36.611 ;23.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 869 ;14.407 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;17.995 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 725 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5662 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1224 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2030 18.9140 -5.3520 REMARK 3 T TENSOR REMARK 3 T11: 0.0998 T22: 0.1386 REMARK 3 T33: 0.2141 T12: -0.0491 REMARK 3 T13: -0.0259 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 4.0284 L22: 37.7675 REMARK 3 L33: 4.1317 L12: -11.6321 REMARK 3 L13: -3.2009 L23: 11.3383 REMARK 3 S TENSOR REMARK 3 S11: 0.0687 S12: 0.0254 S13: -0.2150 REMARK 3 S21: -0.1504 S22: -0.1529 S23: 0.4940 REMARK 3 S31: -0.0578 S32: 0.1703 S33: 0.0843 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9280 36.9290 2.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.0181 T22: 0.0546 REMARK 3 T33: 0.0223 T12: 0.0072 REMARK 3 T13: 0.0157 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 3.3278 L22: 1.9223 REMARK 3 L33: 2.0360 L12: 0.2038 REMARK 3 L13: 0.4206 L23: 0.0999 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: 0.1471 S13: -0.1030 REMARK 3 S21: -0.1394 S22: -0.0076 S23: -0.1498 REMARK 3 S31: -0.0703 S32: 0.0224 S33: 0.0411 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3730 40.3400 17.6680 REMARK 3 T TENSOR REMARK 3 T11: 0.0665 T22: 0.0983 REMARK 3 T33: 0.0230 T12: -0.0101 REMARK 3 T13: 0.0270 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.4889 L22: 1.5397 REMARK 3 L33: 3.1177 L12: -0.4067 REMARK 3 L13: 0.0921 L23: 0.4149 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: -0.2256 S13: -0.1015 REMARK 3 S21: 0.2661 S22: -0.0573 S23: 0.0946 REMARK 3 S31: 0.0592 S32: -0.2922 S33: 0.0728 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 21 REMARK 3 ORIGIN FOR THE GROUP (A): 48.2910 88.2200 5.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.1824 T22: 0.1855 REMARK 3 T33: 0.3497 T12: -0.1338 REMARK 3 T13: 0.0863 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 7.6027 L22: 41.4610 REMARK 3 L33: 3.5332 L12: -16.8880 REMARK 3 L13: 4.6012 L23: -10.7463 REMARK 3 S TENSOR REMARK 3 S11: -0.1906 S12: 0.1188 S13: 0.4761 REMARK 3 S21: 0.1337 S22: 0.2455 S23: -0.3039 REMARK 3 S31: -0.3555 S32: 0.1557 S33: -0.0549 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0320 71.9780 12.9040 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0455 REMARK 3 T33: 0.0303 T12: -0.0030 REMARK 3 T13: -0.0035 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 3.5975 L22: 2.5493 REMARK 3 L33: 2.5073 L12: 0.1024 REMARK 3 L13: -0.2215 L23: 0.6816 REMARK 3 S TENSOR REMARK 3 S11: -0.0940 S12: 0.0889 S13: 0.1227 REMARK 3 S21: -0.1397 S22: 0.0758 S23: 0.1730 REMARK 3 S31: 0.1515 S32: 0.0295 S33: 0.0182 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 154 B 306 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2460 68.9200 28.2860 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.1531 REMARK 3 T33: 0.0512 T12: 0.0331 REMARK 3 T13: 0.0075 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 2.4467 L22: 1.5934 REMARK 3 L33: 2.7170 L12: -0.0957 REMARK 3 L13: -0.1047 L23: -0.2943 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: -0.4408 S13: 0.0907 REMARK 3 S21: 0.3869 S22: 0.0194 S23: -0.1224 REMARK 3 S31: 0.1525 S32: 0.3162 S33: -0.0533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. RESIDUES A2, A197-A204, A308-A322, REMARK 3 B197-B204, B308-B322 ARE DISORDERED. REMARK 4 REMARK 4 4BG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAR-13. REMARK 100 THE PDBE ID CODE IS EBI-56268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29355 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.13 REMARK 200 RESOLUTION RANGE LOW (A) : 35.32 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 9.5 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.8 REMARK 200 R MERGE FOR SHELL (I) : 0.69 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM-POTASSIUM TARTRATE, REMARK 280 26 % PEG 2K MME REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 67.90000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 2 REMARK 465 GLY A 197 REMARK 465 LYS A 198 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 THR A 201 REMARK 465 LEU A 202 REMARK 465 LYS A 203 REMARK 465 MSE A 204 REMARK 465 LYS A 308 REMARK 465 PRO A 309 REMARK 465 SER A 310 REMARK 465 SER A 311 REMARK 465 ASP A 312 REMARK 465 TYR A 313 REMARK 465 ASP A 314 REMARK 465 THR A 315 REMARK 465 GLU A 316 REMARK 465 ARG A 317 REMARK 465 HIS A 318 REMARK 465 LEU A 319 REMARK 465 HIS A 320 REMARK 465 ARG A 321 REMARK 465 SER A 322 REMARK 465 GLY B 197 REMARK 465 LYS B 198 REMARK 465 SER B 199 REMARK 465 GLY B 200 REMARK 465 THR B 201 REMARK 465 LEU B 202 REMARK 465 LYS B 203 REMARK 465 MSE B 204 REMARK 465 LYS B 308 REMARK 465 PRO B 309 REMARK 465 SER B 310 REMARK 465 SER B 311 REMARK 465 ASP B 312 REMARK 465 TYR B 313 REMARK 465 ASP B 314 REMARK 465 THR B 315 REMARK 465 GLU B 316 REMARK 465 ARG B 317 REMARK 465 HIS B 318 REMARK 465 LEU B 319 REMARK 465 HIS B 320 REMARK 465 ARG B 321 REMARK 465 SER B 322 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 92 O HOH B 2016 2.17 REMARK 500 OD1 ASN B 113 O HOH B 2024 2.06 REMARK 500 OD1 ASP B 190 NH1 ARG B 239 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 68 CD A GLU A 68 OE1A 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 261 -179.30 -66.65 REMARK 500 ASN B 261 -179.22 -65.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO N-TERMINAL METHIONINE AND ADDITIONAL TWO AMINO ACIDS AT REMARK 999 C-TERMINUS (RS) DUE TO CLONING. DBREF 4BG2 A 2 320 UNP Q52QJ2 Q52QJ2_PRODI 2 320 DBREF 4BG2 B 2 320 UNP Q52QJ2 Q52QJ2_PRODI 2 320 SEQADV 4BG2 ARG A 321 UNP Q52QJ2 EXPRESSION TAG SEQADV 4BG2 SER A 322 UNP Q52QJ2 EXPRESSION TAG SEQADV 4BG2 ARG B 321 UNP Q52QJ2 EXPRESSION TAG SEQADV 4BG2 SER B 322 UNP Q52QJ2 EXPRESSION TAG SEQRES 1 A 321 ASP LEU ILE ASP ARG LEU GLN ASN ASN GLN ARG LYS ASP SEQRES 2 A 321 ARG ARG LEU GLN PHE VAL ARG THR HIS GLN GLU ALA PHE SEQRES 3 A 321 ASP VAL LYS PRO THR PHE PRO LEU PRO LEU PHE GLU GLU SEQRES 4 A 321 ALA ILE LEU GLU ILE GLU GLY SER CYS SER VAL GLU SER SEQRES 5 A 321 SER CYS GLN VAL GLU GLY ASP ARG LEU GLN GLY GLY ARG SEQRES 6 A 321 TYR GLU VAL CYS ASN ASN GLN GLY THR THR TRP PRO GLU SEQRES 7 A 321 SER LEU THR HIS ALA PHE LYS LEU LEU ASP LYS ILE ASP SEQRES 8 A 321 SER GLN LEU GLY VAL ARG ILE ASN ARG ASP SER PHE ASP SEQRES 9 A 321 ARG PHE ALA ALA ALA HIS VAL ASN SER ARG LYS ILE ILE SEQRES 10 A 321 ASN ASN THR ILE GLY VAL HIS LEU GLY SER LYS LEU GLU SEQRES 11 A 321 ASP SER SER VAL MSE LEU TYR ILE HIS ILE LYS PRO GLU SEQRES 12 A 321 GLU ASP THR GLU GLU LEU ALA ARG THR ALA LEU VAL LEU SEQRES 13 A 321 ASP GLY GLY ARG TYR SER ASP GLU LEU THR ARG VAL LEU SEQRES 14 A 321 LEU ARG ASP THR MSE VAL ILE GLY PHE GLU LEU PHE PHE SEQRES 15 A 321 ASP GLY ARG SER ARG VAL ASP LEU GLY PRO CYS ALA PRO SEQRES 16 A 321 GLY LYS SER GLY THR LEU LYS MSE LYS GLY LYS HIS LEU SEQRES 17 A 321 GLU GLN TYR THR GLN LYS ASN LEU SER ARG LYS VAL ASN SEQRES 18 A 321 SER ILE PHE ARG GLU GLY TYR LEU PHE GLY ALA PHE PHE SEQRES 19 A 321 SER LYS THR ARG VAL GLU PRO ILE LEU PHE PHE TYR HIS SEQRES 20 A 321 SER ILE ILE LYS ASP LEU PRO LYS TYR PHE THR PHE ASN SEQRES 21 A 321 SER LEU GLY ASP LYS ILE TYR ASN PHE CYS GLN SER GLN SEQRES 22 A 321 GLY CYS ILE THR ASP VAL ALA ILE ALA VAL THR GLU THR SEQRES 23 A 321 GLU LEU GLU LYS SER ARG LEU GLU ASN PHE CYS PHE TYR SEQRES 24 A 321 TYR ASP GLN TRP ASP GLU CYS LYS PRO SER SER ASP TYR SEQRES 25 A 321 ASP THR GLU ARG HIS LEU HIS ARG SER SEQRES 1 B 321 ASP LEU ILE ASP ARG LEU GLN ASN ASN GLN ARG LYS ASP SEQRES 2 B 321 ARG ARG LEU GLN PHE VAL ARG THR HIS GLN GLU ALA PHE SEQRES 3 B 321 ASP VAL LYS PRO THR PHE PRO LEU PRO LEU PHE GLU GLU SEQRES 4 B 321 ALA ILE LEU GLU ILE GLU GLY SER CYS SER VAL GLU SER SEQRES 5 B 321 SER CYS GLN VAL GLU GLY ASP ARG LEU GLN GLY GLY ARG SEQRES 6 B 321 TYR GLU VAL CYS ASN ASN GLN GLY THR THR TRP PRO GLU SEQRES 7 B 321 SER LEU THR HIS ALA PHE LYS LEU LEU ASP LYS ILE ASP SEQRES 8 B 321 SER GLN LEU GLY VAL ARG ILE ASN ARG ASP SER PHE ASP SEQRES 9 B 321 ARG PHE ALA ALA ALA HIS VAL ASN SER ARG LYS ILE ILE SEQRES 10 B 321 ASN ASN THR ILE GLY VAL HIS LEU GLY SER LYS LEU GLU SEQRES 11 B 321 ASP SER SER VAL MSE LEU TYR ILE HIS ILE LYS PRO GLU SEQRES 12 B 321 GLU ASP THR GLU GLU LEU ALA ARG THR ALA LEU VAL LEU SEQRES 13 B 321 ASP GLY GLY ARG TYR SER ASP GLU LEU THR ARG VAL LEU SEQRES 14 B 321 LEU ARG ASP THR MSE VAL ILE GLY PHE GLU LEU PHE PHE SEQRES 15 B 321 ASP GLY ARG SER ARG VAL ASP LEU GLY PRO CYS ALA PRO SEQRES 16 B 321 GLY LYS SER GLY THR LEU LYS MSE LYS GLY LYS HIS LEU SEQRES 17 B 321 GLU GLN TYR THR GLN LYS ASN LEU SER ARG LYS VAL ASN SEQRES 18 B 321 SER ILE PHE ARG GLU GLY TYR LEU PHE GLY ALA PHE PHE SEQRES 19 B 321 SER LYS THR ARG VAL GLU PRO ILE LEU PHE PHE TYR HIS SEQRES 20 B 321 SER ILE ILE LYS ASP LEU PRO LYS TYR PHE THR PHE ASN SEQRES 21 B 321 SER LEU GLY ASP LYS ILE TYR ASN PHE CYS GLN SER GLN SEQRES 22 B 321 GLY CYS ILE THR ASP VAL ALA ILE ALA VAL THR GLU THR SEQRES 23 B 321 GLU LEU GLU LYS SER ARG LEU GLU ASN PHE CYS PHE TYR SEQRES 24 B 321 TYR ASP GLN TRP ASP GLU CYS LYS PRO SER SER ASP TYR SEQRES 25 B 321 ASP THR GLU ARG HIS LEU HIS ARG SER MODRES 4BG2 MSE A 136 MET SELENOMETHIONINE MODRES 4BG2 MSE A 175 MET SELENOMETHIONINE MODRES 4BG2 MSE B 136 MET SELENOMETHIONINE MODRES 4BG2 MSE B 175 MET SELENOMETHIONINE HET MSE A 136 8 HET MSE A 175 8 HET MSE B 136 8 HET MSE B 175 8 HETNAM MSE SELENOMETHIONINE FORMUL 3 MSE 4(C5 H11 N O2 SE) FORMUL 4 HOH *86(H2 O) HELIX 1 1 LEU A 3 PHE A 27 1 25 HELIX 2 2 PRO A 34 GLU A 44 1 11 HELIX 3 3 GLU A 79 SER A 93 1 15 HELIX 4 4 ARG A 101 VAL A 112 1 12 HELIX 5 5 LYS A 129 ASP A 132 5 4 HELIX 6 6 THR A 147 GLY A 159 1 13 HELIX 7 7 SER A 163 ASP A 173 1 11 HELIX 8 8 GLY A 206 LEU A 217 1 12 HELIX 9 9 SER A 218 PHE A 225 1 8 HELIX 10 10 ILE A 250 LYS A 252 5 3 HELIX 11 11 ASP A 253 PHE A 258 1 6 HELIX 12 12 ASN A 261 GLN A 274 1 14 HELIX 13 13 GLU A 286 GLU A 290 1 5 HELIX 14 14 ASP B 2 PHE B 27 1 26 HELIX 15 15 PRO B 34 GLU B 44 1 11 HELIX 16 16 GLU B 79 SER B 93 1 15 HELIX 17 17 ARG B 101 VAL B 112 1 12 HELIX 18 18 LYS B 129 ASP B 132 5 4 HELIX 19 19 THR B 147 GLY B 159 1 13 HELIX 20 20 SER B 163 ASP B 173 1 11 HELIX 21 21 GLY B 206 LEU B 217 1 12 HELIX 22 22 SER B 218 PHE B 225 1 8 HELIX 23 23 ILE B 250 LYS B 252 5 3 HELIX 24 24 ASP B 253 PHE B 258 1 6 HELIX 25 25 ASN B 261 GLN B 274 1 14 HELIX 26 26 GLU B 286 GLU B 290 1 5 SHEET 1 AA25 CYS A 49 GLU A 58 0 SHEET 2 AA25 ARG A 61 ASN A 71 -1 O ARG A 61 N GLU A 58 SHEET 3 AA25 ILE A 122 HIS A 125 -1 O ILE A 122 N VAL A 69 SHEET 4 AA25 SER A 134 ILE A 141 1 O SER A 134 N HIS A 125 SHEET 5 AA25 ILE A 117 ASN A 120 -1 N ILE A 118 O HIS A 140 SHEET 6 AA25 THR A 174 PHE A 182 0 SHEET 7 AA25 SER A 187 ALA A 195 0 SHEET 8 AA25 LEU A 230 PHE A 234 0 SHEET 9 AA25 ILE A 243 HIS A 248 0 SHEET 10 AA25 ILE A 277 THR A 285 0 SHEET 11 AA25 ASN A 296 TRP A 304 0 SHEET 12 AA25 CYS A 49 GLU A 58 -1 O VAL A 51 N GLN A 303 SHEET 1 BA22 CYS B 49 GLU B 58 0 SHEET 2 BA22 ARG B 61 ASN B 71 -1 O ARG B 61 N GLU B 58 SHEET 3 BA22 ILE B 117 ASN B 120 0 SHEET 4 BA22 SER B 134 ILE B 141 -1 O HIS B 140 N ILE B 118 SHEET 5 BA22 ILE B 122 HIS B 125 -1 O GLY B 123 N MSE B 136 SHEET 6 BA22 THR B 174 PHE B 182 0 SHEET 7 BA22 SER B 187 ALA B 195 0 SHEET 8 BA22 LEU B 230 PHE B 234 0 SHEET 9 BA22 ILE B 243 HIS B 248 0 SHEET 10 BA22 ILE B 277 THR B 285 0 SHEET 11 BA22 ASN B 296 TRP B 304 0 SHEET 12 BA22 CYS B 49 GLU B 58 -1 O VAL B 51 N GLN B 303 SSBOND 1 CYS A 276 CYS A 307 1555 1555 2.03 SSBOND 2 CYS B 276 CYS B 307 1555 1555 2.03 LINK N MSE A 136 C VAL A 135 1555 1555 1.33 LINK C MSE A 136 N LEU A 137 1555 1555 1.32 LINK N MSE A 175 C THR A 174 1555 1555 1.32 LINK C MSE A 175 N VAL A 176 1555 1555 1.32 LINK C MSE B 136 N LEU B 137 1555 1555 1.33 LINK N MSE B 136 C VAL B 135 1555 1555 1.33 LINK C MSE B 175 N VAL B 176 1555 1555 1.33 LINK N MSE B 175 C THR B 174 1555 1555 1.32 CISPEP 1 PHE A 33 PRO A 34 0 4.30 CISPEP 2 TRP A 77 PRO A 78 0 5.57 CISPEP 3 PHE B 33 PRO B 34 0 6.81 CISPEP 4 TRP B 77 PRO B 78 0 4.78 CRYST1 47.080 135.800 48.738 90.00 118.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021240 0.000000 0.011552 0.00000 SCALE2 0.000000 0.007364 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023356 0.00000