HEADER TRANSFERASE 24-MAR-13 4BG9 TITLE APO FORM OF A PUTATIVE SUGAR KINASE MK0840 FROM METHANOPYRUS KANDLERI TITLE 2 (ORTHORHOMBIC SPACE GROUP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED MOLECULAR CHAPERONE DISTANTLY RELATED TO HSP70-F COMPND 3 OLD METALLOPROTEASES; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: PUTATIVE SUGAR KINASE MK0840; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOPYRUS KANDLERI; SOURCE 3 ORGANISM_TAXID: 190192; SOURCE 4 STRAIN: AV19; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 10 OTHER_DETAILS: DSM6324 KEYWDS TRANSFERASE, ASKHA SUPERFAMILY, PHOSPHOTRANSFER, PSEUDOMUREIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHACHERL,S.M.WALTERSPERGER,U.BAUMANN REVDAT 4 20-DEC-23 4BG9 1 REMARK LINK REVDAT 3 06-MAR-19 4BG9 1 REMARK LINK REVDAT 2 18-DEC-13 4BG9 1 JRNL REVDAT 1 27-NOV-13 4BG9 0 JRNL AUTH M.SCHACHERL,S.M.WALTERSPERGER,U.BAUMANN JRNL TITL STRUCTURAL CHARACTERIZATION OF THE RIBONUCLEASE H-LIKE TYPE JRNL TITL 2 ASKHA SUPERFAMILY KINASE MK0840 FROM METHANOPYRUS KANDLERI JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 2440 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 24311585 JRNL DOI 10.1107/S0907444913022683 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.170 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 33085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.8376 - 5.3288 0.99 2682 144 0.1974 0.2326 REMARK 3 2 5.3288 - 4.2299 0.98 2659 137 0.1408 0.1404 REMARK 3 3 4.2299 - 3.6953 0.99 2650 140 0.1419 0.1493 REMARK 3 4 3.6953 - 3.3575 0.99 2689 144 0.1496 0.1721 REMARK 3 5 3.3575 - 3.1168 0.99 2661 137 0.1578 0.1960 REMARK 3 6 3.1168 - 2.9331 1.00 2697 146 0.1701 0.2119 REMARK 3 7 2.9331 - 2.7862 0.99 2674 137 0.1738 0.2118 REMARK 3 8 2.7862 - 2.6649 1.00 2671 140 0.1666 0.2180 REMARK 3 9 2.6649 - 2.5623 1.00 2678 140 0.1654 0.2333 REMARK 3 10 2.5623 - 2.4739 0.99 2703 143 0.1784 0.2273 REMARK 3 11 2.4739 - 2.3965 1.00 2667 139 0.1700 0.2004 REMARK 3 12 2.3965 - 2.3280 1.00 2674 141 0.1742 0.2289 REMARK 3 13 2.3280 - 2.2667 0.99 2700 142 0.1808 0.2424 REMARK 3 14 2.2667 - 2.2114 1.00 2646 137 0.1865 0.2220 REMARK 3 15 2.2114 - 2.1611 0.99 2707 143 0.1966 0.2276 REMARK 3 16 2.1611 - 2.1151 0.99 2663 141 0.2053 0.2047 REMARK 3 17 2.1151 - 2.0728 0.99 2676 145 0.2238 0.2486 REMARK 3 18 2.0728 - 2.0337 1.00 2658 145 0.2328 0.2879 REMARK 3 19 2.0337 - 1.9974 1.00 2679 140 0.2471 0.3052 REMARK 3 20 1.9974 - 1.9635 0.99 2674 138 0.2597 0.2982 REMARK 3 21 1.9635 - 1.9319 0.99 2673 141 0.2808 0.2812 REMARK 3 22 1.9319 - 1.9021 0.97 2612 140 0.2991 0.3551 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.33440 REMARK 3 B22 (A**2) : -3.74070 REMARK 3 B33 (A**2) : -1.59370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2442 REMARK 3 ANGLE : 1.375 3320 REMARK 3 CHIRALITY : 0.076 376 REMARK 3 PLANARITY : 0.007 448 REMARK 3 DIHEDRAL : 14.080 917 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290056272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 61.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BG8 CHAIN A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M POTASSIUM THIOCYANATE, 0.1 M REMARK 280 SODIUM ACETATE PH 4.6 AT 293 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.52150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.98350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.52150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.98350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 115.96700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 GLY A 7 REMARK 465 HIS A 8 REMARK 465 ASN A 9 REMARK 465 PRO A 10 REMARK 465 VAL A 11 REMARK 465 PRO A 12 REMARK 465 PRO A 13 REMARK 465 VAL A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 PHE A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 ALA A 21 REMARK 465 ARG A 22 REMARK 465 VAL A 23 REMARK 465 LEU A 24 REMARK 465 LEU A 25 REMARK 465 ASN A 26 REMARK 465 ARG A 27 REMARK 465 HIS A 28 REMARK 465 ARG A 29 REMARK 465 GLU A 30 REMARK 465 THR A 31 REMARK 465 VAL A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 THR A 36 REMARK 465 THR A 352 REMARK 465 GLY A 353 REMARK 465 ARG A 354 REMARK 465 GLY A 355 REMARK 465 GLY A 356 REMARK 465 LYS A 357 REMARK 465 THR A 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 351 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 195 O HOH A 2082 1.84 REMARK 500 OE1 GLU A 252 O HOH A 2113 1.87 REMARK 500 O HOH A 2030 O HOH A 2069 2.13 REMARK 500 OE2 GLU A 220 O HOH A 2095 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2027 O HOH A 2110 2565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 169 CB MSE A 169 CG 2.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 169 CA - CB - CG ANGL. DEV. = 21.7 DEGREES REMARK 500 MSE A 169 CB - CG - SE ANGL. DEV. = -62.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 211 22.76 -143.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1353 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 66 O REMARK 620 2 GLU A 67 OE2 77.0 REMARK 620 3 SER A 310 O 151.2 105.5 REMARK 620 4 GLU A 311 O 78.5 71.9 75.3 REMARK 620 5 TRP A 313 O 91.8 161.6 77.4 91.7 REMARK 620 6 HOH A2016 O 130.4 59.7 69.9 107.2 135.9 REMARK 620 7 HOH A2133 O 145.8 132.7 50.0 122.4 63.2 73.1 REMARK 620 8 HOH A2138 O 77.3 108.2 126.6 155.0 82.9 93.3 76.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1352 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD2 REMARK 620 2 ASP A 138 O 98.8 REMARK 620 3 GLY A 141 O 162.3 74.2 REMARK 620 4 PRO A 143 O 81.8 82.0 81.0 REMARK 620 5 ASP A 144 OD2 71.6 170.4 114.9 96.1 REMARK 620 6 ASP A 144 OD1 95.4 145.0 82.7 68.6 39.4 REMARK 620 7 HOH A2046 O 101.2 82.9 94.2 164.8 98.9 125.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1351 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 ALA A 142 O 86.9 REMARK 620 3 PHE A 182 O 90.2 91.5 REMARK 620 4 GLY A 183 O 88.8 165.2 74.3 REMARK 620 5 ALA A 185 O 176.4 94.9 92.8 90.2 REMARK 620 6 HOH A2079 O 120.2 132.6 123.3 61.3 56.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1355 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BG8 RELATED DB: PDB REMARK 900 APO FORM OF A PUTATIVE SUGAR KINASE MK0840 FROM METHANOPYRUS REMARK 900 KANDLERI (MONOCLINIC SPACE GROUP) REMARK 900 RELATED ID: 4BGA RELATED DB: PDB REMARK 900 NUCLEOTIDE-BOUND OPEN FORM OF A PUTATIVE SUGAR KINASE MK0840 FROM REMARK 900 METHANOPYRUS KANDLERI REMARK 900 RELATED ID: 4BGB RELATED DB: PDB REMARK 900 NUCLEOTIDE-BOUND CLOSED FORM OF A PUTATIVE SUGAR KINASE MK0840 FROM REMARK 900 METHANOPYRUS KANDLERI REMARK 999 REMARK 999 SEQUENCE REMARK 999 GSH OVERHANG FROM THROMBIN DIGEST OF THE N-TERMINAL 6XHIS- REMARK 999 TAG DBREF 4BG9 A 1 358 UNP Q8TX37 Q8TX37_METKA 1 358 SEQADV 4BG9 GLY A -2 UNP Q8TX37 EXPRESSION TAG SEQADV 4BG9 SER A -1 UNP Q8TX37 EXPRESSION TAG SEQADV 4BG9 HIS A 0 UNP Q8TX37 EXPRESSION TAG SEQRES 1 A 361 GLY SER HIS MSE PRO VAL LEU GLY LEU GLY HIS ASN PRO SEQRES 2 A 361 VAL PRO PRO VAL SER GLY PHE THR ALA GLY ALA ARG VAL SEQRES 3 A 361 LEU LEU ASN ARG HIS ARG GLU THR VAL GLY GLY SER THR SEQRES 4 A 361 LEU THR ARG VAL LEU GLY ILE GLN LEU GLY ASN THR GLY SEQRES 5 A 361 THR ASP TYR CYS VAL MSE ASN GLU ASP GLY ASP TRP GLU SEQRES 6 A 361 ILE VAL ALA ARG GLU GLU GLY VAL PHE GLY LYS ILE SER SEQRES 7 A 361 CYS VAL PHE THR LEU GLU GLU SER ARG ARG ALA LEU ARG SEQRES 8 A 361 GLU GLU ILE ALA PRO ARG VAL ILE GLU ARG VAL ARG ARG SEQRES 9 A 361 VAL ASN PRO ASP LEU ALA VAL VAL GLY THR ILE VAL ASP SEQRES 10 A 361 GLU LEU GLY LEU ILE LEU GLY PRO MSE ILE HIS GLU LYS SEQRES 11 A 361 THR GLY VAL PRO THR LEU ALA VAL TYR GLY ASP PRO TRP SEQRES 12 A 361 GLY ALA PRO ASP GLY ASP ALA VAL GLY ALA PRO TYR CYS SEQRES 13 A 361 VAL ALA GLU GLU TYR PRO ASN CYS VAL HIS VAL ASP VAL SEQRES 14 A 361 GLY ALA MSE ALA VAL VAL THR PRO ILE ARG ASP GLY ARG SEQRES 15 A 361 PRO ASP PHE GLY ASP ALA VAL VAL SER VAL GLY THR PHE SEQRES 16 A 361 PRO LEU ASP LEU ALA ALA ARG GLU LEU LEU GLY LYS GLU SEQRES 17 A 361 TYR ASP GLU GLY GLY LYS LYS ALA ALA GLU GLY GLU VAL SEQRES 18 A 361 ASP GLU ASN PHE ARG ARG GLU LEU ARG SER VAL ASP VAL SEQRES 19 A 361 ASP GLY LYS PRO VAL PHE GLY ARG VAL ARG GLY SER LEU SEQRES 20 A 361 ALA PRO VAL PRO PRO GLU GLN GLU ARG VAL LEU ARG ASP SEQRES 21 A 361 HIS ILE ARG ASP ALA GLY ALA PRO ALA GLU ASP VAL LEU SEQRES 22 A 361 ARG THR LEU VAL GLU LEU VAL ALA GLU THR ILE VAL ILE SEQRES 23 A 361 ASN ALA ALA GLN TYR ASP MSE ASP LEU LEU VAL LEU SER SEQRES 24 A 361 GLY GLY GLY VAL LYS ASN GLU LEU LEU LYS ARG ARG VAL SEQRES 25 A 361 SER GLU LEU TRP GLU GLY ASP VAL SER ILE PHE ALA GLY SEQRES 26 A 361 GLU GLU LEU GLU ALA ARG GLY LEU CYS LEU LEU GLY LEU SEQRES 27 A 361 ARG TYR LEU GLU GLY GLU PRO VAL PRO ALA LEU PRO CYS SEQRES 28 A 361 GLU GLY GLY THR GLY ARG GLY GLY LYS THR MODRES 4BG9 MSE A 55 MET SELENOMETHIONINE MODRES 4BG9 MSE A 123 MET SELENOMETHIONINE MODRES 4BG9 MSE A 169 MET SELENOMETHIONINE MODRES 4BG9 MSE A 290 MET SELENOMETHIONINE HET MSE A 55 12 HET MSE A 123 12 HET MSE A 169 12 HET MSE A 290 12 HET K A1351 1 HET K A1352 1 HET K A1353 1 HET CL A1354 1 HET ACT A1355 4 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 K 3(K 1+) FORMUL 5 CL CL 1- FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *152(H2 O) HELIX 1 1 THR A 79 GLU A 90 1 12 HELIX 2 2 GLU A 90 ASN A 103 1 14 HELIX 3 3 VAL A 113 GLY A 129 1 17 HELIX 4 4 ASP A 144 ALA A 147 5 4 HELIX 5 5 VAL A 148 TYR A 158 1 11 HELIX 6 6 THR A 191 GLY A 203 1 13 HELIX 7 7 LYS A 212 GLY A 216 5 5 HELIX 8 8 ASP A 219 SER A 228 1 10 HELIX 9 9 VAL A 247 ALA A 262 1 16 HELIX 10 10 PRO A 265 ALA A 286 1 22 HELIX 11 11 GLN A 287 ASP A 289 5 3 HELIX 12 12 GLY A 297 LYS A 301 5 5 HELIX 13 13 ASN A 302 TRP A 313 1 12 HELIX 14 14 GLU A 324 GLU A 339 1 16 SHEET 1 AA 6 TRP A 61 GLU A 68 0 SHEET 2 AA 6 GLY A 49 ASN A 56 -1 O THR A 50 N GLU A 67 SHEET 3 AA 6 ARG A 39 LEU A 45 -1 O VAL A 40 N MSE A 55 SHEET 4 AA 6 LEU A 106 THR A 111 1 O LEU A 106 N LEU A 41 SHEET 5 AA 6 THR A 132 VAL A 135 1 O LEU A 133 N VAL A 109 SHEET 6 AA 6 ALA A 345 CYS A 348 -1 O LEU A 346 N ALA A 134 SHEET 1 AB 2 ARG A 179 PRO A 180 0 SHEET 2 AB 2 MSE A 169 ARG A 176 1 O ARG A 176 N ARG A 179 SHEET 1 AC 2 VAL A 186 VAL A 189 0 SHEET 2 AC 2 MSE A 169 ARG A 176 -1 O ALA A 170 N SER A 188 SHEET 1 AD 5 ASP A 316 ILE A 319 0 SHEET 2 AD 5 LEU A 292 SER A 296 1 O LEU A 293 N SER A 318 SHEET 3 AD 5 CYS A 161 VAL A 166 1 O VAL A 162 N VAL A 294 SHEET 4 AD 5 MSE A 169 ARG A 176 -1 O VAL A 171 N ASP A 165 SHEET 5 AD 5 ARG A 179 PRO A 180 1 O ARG A 179 N ARG A 176 SHEET 1 AE 5 ASP A 316 ILE A 319 0 SHEET 2 AE 5 LEU A 292 SER A 296 1 O LEU A 293 N SER A 318 SHEET 3 AE 5 CYS A 161 VAL A 166 1 O VAL A 162 N VAL A 294 SHEET 4 AE 5 MSE A 169 ARG A 176 -1 O VAL A 171 N ASP A 165 SHEET 5 AE 5 VAL A 186 VAL A 189 -1 O VAL A 186 N VAL A 172 SHEET 1 AF 2 ASP A 230 VAL A 231 0 SHEET 2 AF 2 LYS A 234 PRO A 235 -1 O LYS A 234 N VAL A 231 LINK C VAL A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N ASN A 56 1555 1555 1.33 LINK C PRO A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N ILE A 124 1555 1555 1.33 LINK C ALA A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N ALA A 170 1555 1555 1.33 LINK C ASP A 289 N MSE A 290 1555 1555 1.33 LINK C MSE A 290 N ASP A 291 1555 1555 1.32 LINK O ARG A 66 K K A1353 1555 1555 2.61 LINK OE2 GLU A 67 K K A1353 1555 1555 2.94 LINK OD2 ASP A 114 K K A1352 1555 1555 2.80 LINK OD2 ASP A 138 K K A1351 1555 1555 2.59 LINK O ASP A 138 K K A1352 1555 1555 2.63 LINK O GLY A 141 K K A1352 1555 1555 2.62 LINK O ALA A 142 K K A1351 1555 1555 2.61 LINK O PRO A 143 K K A1352 1555 1555 3.13 LINK OD2 ASP A 144 K K A1352 1555 1555 3.05 LINK OD1 ASP A 144 K K A1352 1555 1555 3.40 LINK O PHE A 182 K K A1351 1555 1555 2.81 LINK O GLY A 183 K K A1351 1555 1555 2.78 LINK O ALA A 185 K K A1351 1555 1555 2.70 LINK O SER A 310 K K A1353 4456 1555 2.67 LINK O GLU A 311 K K A1353 4456 1555 2.86 LINK O TRP A 313 K K A1353 4456 1555 2.72 LINK K K A1351 O HOH A2079 1555 1555 3.36 LINK K K A1352 O HOH A2046 1555 1555 2.77 LINK K K A1353 O HOH A2016 1555 1555 3.15 LINK K K A1353 O HOH A2133 1555 4456 3.46 LINK K K A1353 O HOH A2138 1555 4456 2.92 CISPEP 1 ALA A 142 PRO A 143 0 0.94 SITE 1 AC1 6 ASP A 138 ALA A 142 PHE A 182 GLY A 183 SITE 2 AC1 6 ALA A 185 SER A 243 SITE 1 AC2 6 ASP A 114 ASP A 138 GLY A 141 PRO A 143 SITE 2 AC2 6 ASP A 144 HOH A2046 SITE 1 AC3 6 ARG A 66 GLU A 67 SER A 310 GLU A 311 SITE 2 AC3 6 TRP A 313 HOH A2138 SITE 1 AC4 3 GLU A 324 ARG A 328 HOH A2144 SITE 1 AC5 8 VAL A 64 ALA A 65 ARG A 98 ARG A 101 SITE 2 AC5 8 VAL A 102 ARG A 307 ARG A 308 GLU A 311 CRYST1 73.043 115.967 48.363 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013691 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020677 0.00000