HEADER IMMUNE SYSTEM 30-MAR-13 4BH7 TITLE CRYSTAL STRUCTURE OF GERMLINE ANTIBODY 36-65 IN COMPLEX WITH PEPTIDE TITLE 2 PPYPAWHAPGNI COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-ARS MURINE GERMLINE MONOCLONAL ANTIBODY 36-65; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ANTIGEN BINDING FRAGMENT; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-ARS MURINE GERMLINE MONOCLONAL ANTIBODY 36-65; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: ANTIGEN BINDING FRAGMENT; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DODECAPEPTIDE ANTIGEN; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 CELL_LINE: 36-65 HYBRIDOMA; SOURCE 7 ORGAN: SPLEEN; SOURCE 8 CELL: B CELL; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 STRAIN: BALB/C; SOURCE 14 CELL_LINE: 36-65 HYBRIDOMA; SOURCE 15 ORGAN: SPLEEN; SOURCE 16 CELL: B CELL; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630 KEYWDS IMMUNE SYSTEM, CONVERGENCE OF ANTIBODY SPECIFICITIES EXPDTA X-RAY DIFFRACTION AUTHOR T.KHAN,D.M.SALUNKE REVDAT 4 20-DEC-23 4BH7 1 REMARK REVDAT 3 28-MAY-14 4BH7 1 JRNL REVDAT 2 14-MAY-14 4BH7 1 JRNL REVDAT 1 16-APR-14 4BH7 0 JRNL AUTH T.KHAN,D.M.SALUNKE JRNL TITL ADJUSTABLE LOCKS AND FLEXIBLE KEYS: PLASTICITY OF JRNL TITL 2 EPITOPE-PARATOPE INTERACTIONS IN GERMLINE ANTIBODIES. JRNL REF J.IMMUNOL. V. 192 5398 2014 JRNL REFN ISSN 0022-1767 JRNL PMID 24790145 JRNL DOI 10.4049/JIMMUNOL.1302143 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 9490 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3381 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.04000 REMARK 3 B22 (A**2) : 1.40000 REMARK 3 B33 (A**2) : -0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.325 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.262 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.702 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3467 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4723 ; 1.804 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 436 ; 4.382 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;36.420 ;24.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 544 ;18.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;24.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2634 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2190 ; 0.916 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3553 ; 1.685 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1277 ; 1.473 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1170 ; 2.405 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 4BH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290053333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER CMF12 38CU-6 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10548 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 57.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2A6J REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M SODIUM CACODYLATE PH 6.5, 18% REMARK 280 PEG 3000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.38500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 137 REMARK 465 ALA B 138 REMARK 465 GLN B 139 REMARK 465 THR B 140 REMARK 465 PRO P 0 REMARK 465 ASN P 10 REMARK 465 ILE P 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLY P 9 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA P 7 CA ALA P 7 CB -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 76 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 PRO P 3 C - N - CA ANGL. DEV. = 13.3 DEGREES REMARK 500 TRP P 5 CA - CB - CG ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 23 128.37 -172.87 REMARK 500 TYR A 32 68.83 -112.55 REMARK 500 LEU A 47 -65.18 -128.43 REMARK 500 TYR A 50 117.31 55.09 REMARK 500 SER A 52 4.84 100.34 REMARK 500 ARG A 61 6.19 -64.56 REMARK 500 SER A 67 -25.38 -151.89 REMARK 500 LEU A 78 161.27 -43.55 REMARK 500 GLU A 81 -38.98 -30.50 REMARK 500 ALA B 9 150.29 -41.26 REMARK 500 PRO B 41 38.03 -74.67 REMARK 500 GLN B 43 55.88 -153.30 REMARK 500 TYR B 102 136.08 -175.38 REMARK 500 ALA B 122 170.56 -52.35 REMARK 500 PRO B 134 -172.47 -58.85 REMARK 500 PHE B 154 133.01 -172.19 REMARK 500 SER B 180 12.31 82.81 REMARK 500 ASP B 181 13.49 80.48 REMARK 500 ARG B 221 -119.05 116.98 REMARK 500 TYR P 2 148.41 -172.71 REMARK 500 ALA P 4 -133.65 -161.21 REMARK 500 TRP P 5 -12.36 -172.57 REMARK 500 PRO P 8 94.87 -57.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA P 4 TRP P 5 146.94 REMARK 500 TRP P 5 HIS P 6 148.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA P 4 12.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BH8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GERMLINE ANTIBODY 36-65 IN COMPLEX WITH REMARK 900 PEPTIDE GDPRPSYISHLL DBREF 4BH7 A 1 214 PDB 4BH7 4BH7 1 214 DBREF 4BH7 B 1 222 PDB 4BH7 4BH7 1 222 DBREF 4BH7 P 0 11 PDB 4BH7 4BH7 0 11 SEQRES 1 A 214 ASP ILE GLN MET THR GLN THR THR SER SER LEU SER ALA SEQRES 2 A 214 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 A 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 A 214 PRO ASP GLY THR VAL SER LEU LEU ILE TYR TYR GLY SER SEQRES 5 A 214 ARG LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 A 214 GLU GLN GLU ASP ILE ALA THR TYR PHE CYS GLN GLN GLY SEQRES 8 A 214 ASN THR LEU PRO ARG THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 A 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 A 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 A 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 A 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 A 214 PHE ASN ARG ASN GLU CYS SEQRES 1 B 222 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL ARG SEQRES 2 B 222 ALA GLY SER SER VAL LYS MET SER CYS LYS ALA SER GLY SEQRES 3 B 222 TYR THR PHE THR SER TYR GLY ILE ASN TRP VAL LYS GLN SEQRES 4 B 222 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY TYR ILE ASN SEQRES 5 B 222 PRO GLY ASN GLY TYR THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 B 222 GLY LYS THR THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 B 222 ALA TYR MET GLN LEU ARG SER LEU THR SER GLU ASP SER SEQRES 8 B 222 ALA VAL TYR PHE CYS ALA ARG SER VAL TYR TYR GLY GLY SEQRES 9 B 222 SER TYR TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU SEQRES 10 B 222 THR VAL SER SER ALA LYS THR THR PRO PRO SER VAL TYR SEQRES 11 B 222 PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER MET SEQRES 12 B 222 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 B 222 PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SEQRES 14 B 222 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU SEQRES 15 B 222 TYR THR LEU SER SER SER VAL THR VAL PRO SER SER PRO SEQRES 16 B 222 ARG PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO SEQRES 17 B 222 ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 18 B 222 ASP SEQRES 1 P 12 PRO PRO TYR PRO ALA TRP HIS ALA PRO GLY ASN ILE FORMUL 4 HOH *77(H2 O) HELIX 1 1 GLU A 79 ILE A 83 5 5 HELIX 2 2 SER A 121 THR A 126 1 6 HELIX 3 3 LYS A 183 ARG A 188 1 6 HELIX 4 4 THR B 28 TYR B 32 5 5 HELIX 5 5 GLU B 62 LYS B 65 5 4 HELIX 6 6 THR B 87 SER B 91 5 5 HELIX 7 7 SER B 164 SER B 166 5 3 HELIX 8 8 PRO B 208 SER B 211 5 4 SHEET 1 AA 4 MET A 4 THR A 5 0 SHEET 2 AA 4 VAL A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 AA 4 ASP A 70 ILE A 75 -1 O TYR A 71 N CYS A 23 SHEET 4 AA 4 PHE A 62 GLY A 66 -1 O SER A 63 N THR A 74 SHEET 1 AB 4 SER A 10 ALA A 13 0 SHEET 2 AB 4 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 AB 4 THR A 85 GLN A 90 -1 O TYR A 86 N THR A 102 SHEET 4 AB 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AC 6 SER A 10 ALA A 13 0 SHEET 2 AC 6 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 AC 6 THR A 85 GLN A 90 -1 O TYR A 86 N THR A 102 SHEET 4 AC 6 LEU A 33 GLN A 38 -1 O ASN A 34 N GLN A 89 SHEET 5 AC 6 VAL A 44 TYR A 49 -1 O SER A 45 N GLN A 37 SHEET 6 AC 6 LEU A 54 HIS A 55 -1 O LEU A 54 N TYR A 49 SHEET 1 AD 2 THR A 97 PHE A 98 0 SHEET 2 AD 2 THR A 85 GLN A 90 -1 O GLN A 90 N THR A 97 SHEET 1 AE 4 THR A 114 PHE A 118 0 SHEET 2 AE 4 GLY A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 AE 4 TYR A 173 THR A 182 -1 O TYR A 173 N PHE A 139 SHEET 4 AE 4 LEU A 160 TRP A 163 -1 O LEU A 160 N THR A 178 SHEET 1 AF 4 SER A 153 ARG A 155 0 SHEET 2 AF 4 ASN A 145 ILE A 150 -1 O TRP A 148 N ARG A 155 SHEET 3 AF 4 SER A 191 THR A 197 -1 O THR A 193 N LYS A 149 SHEET 4 AF 4 ILE A 205 ASN A 210 -1 O ILE A 205 N ALA A 196 SHEET 1 BA 4 GLN B 3 GLN B 6 0 SHEET 2 BA 4 VAL B 18 SER B 25 -1 O LYS B 23 N GLN B 5 SHEET 3 BA 4 THR B 78 LEU B 83 -1 O ALA B 79 N CYS B 22 SHEET 4 BA 4 THR B 68 ASP B 73 -1 O THR B 69 N GLN B 82 SHEET 1 BB 4 GLU B 10 VAL B 12 0 SHEET 2 BB 4 THR B 115 VAL B 119 -1 O THR B 116 N GLU B 10 SHEET 3 BB 4 ALA B 92 TYR B 102 -1 O ALA B 92 N LEU B 117 SHEET 4 BB 4 SER B 105 TRP B 111 -1 O SER B 105 N TYR B 102 SHEET 1 BC 6 GLU B 10 VAL B 12 0 SHEET 2 BC 6 THR B 115 VAL B 119 -1 O THR B 116 N GLU B 10 SHEET 3 BC 6 ALA B 92 TYR B 102 -1 O ALA B 92 N LEU B 117 SHEET 4 BC 6 GLY B 33 GLN B 39 -1 O GLY B 33 N SER B 99 SHEET 5 BC 6 GLU B 46 ILE B 51 -1 O GLU B 46 N LYS B 38 SHEET 6 BC 6 THR B 58 TYR B 60 -1 O LYS B 59 N TYR B 50 SHEET 1 BD 2 SER B 105 TRP B 111 0 SHEET 2 BD 2 ALA B 92 TYR B 102 -1 O ARG B 98 N ASP B 109 SHEET 1 BE 4 SER B 128 LEU B 132 0 SHEET 2 BE 4 MET B 143 TYR B 153 -1 O GLY B 147 N LEU B 132 SHEET 3 BE 4 LEU B 182 PRO B 192 -1 O TYR B 183 N TYR B 153 SHEET 4 BE 4 VAL B 177 GLN B 179 1 O VAL B 177 N THR B 184 SHEET 1 BF 4 SER B 128 LEU B 132 0 SHEET 2 BF 4 MET B 143 TYR B 153 -1 O GLY B 147 N LEU B 132 SHEET 3 BF 4 LEU B 182 PRO B 192 -1 O TYR B 183 N TYR B 153 SHEET 4 BF 4 VAL B 171 THR B 173 -1 O HIS B 172 N SER B 188 SHEET 1 BG 2 VAL B 177 GLN B 179 0 SHEET 2 BG 2 LEU B 182 PRO B 192 1 O LEU B 182 N GLN B 179 SHEET 1 BH 3 THR B 159 TRP B 162 0 SHEET 2 BH 3 THR B 202 HIS B 207 -1 O ASN B 204 N THR B 161 SHEET 3 BH 3 THR B 212 LYS B 217 -1 O THR B 212 N HIS B 207 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.03 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.02 SSBOND 4 CYS B 148 CYS B 203 1555 1555 2.01 CISPEP 1 LEU A 94 PRO A 95 0 0.42 CISPEP 2 TYR A 140 PRO A 141 0 2.93 CISPEP 3 PHE B 154 PRO B 155 0 -1.44 CISPEP 4 GLU B 156 PRO B 157 0 2.09 CISPEP 5 ARG B 196 PRO B 197 0 0.16 CRYST1 54.560 76.770 59.170 90.00 102.31 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018328 0.000000 0.004000 0.00000 SCALE2 0.000000 0.013026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017298 0.00000