HEADER TRANSCRIPTION 30-MAR-13 4BH9 TITLE A STRUCTURAL MODEL OF CAP MUTANT (T127L AND S128I) IN THE APO STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-ACTIVATED GLOBAL TRANSCRIPTIONAL REGULATOR CRP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CATABOLITE ACTIVATOR PROTEIN,CAP,CATABOLITE GENE ACTIVATOR, COMPND 5 CAMP RECEPTOR PROTEIN,CRP,CAMP REGULATORY PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CRP, CAP, CSM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.R.TZENG,C.G.KALODIMOS REVDAT 5 14-JUN-23 4BH9 1 REMARK REVDAT 4 21-NOV-18 4BH9 1 COMPND SOURCE JRNL REMARK REVDAT 4 2 1 DBREF REVDAT 3 03-JUL-13 4BH9 1 JRNL REVDAT 2 15-MAY-13 4BH9 1 COMPND JRNL ATOM MASTER REVDAT 1 08-MAY-13 4BH9 0 JRNL AUTH S.R.TZENG,C.G.KALODIMOS JRNL TITL ALLOSTERIC INHIBITION THROUGH SUPPRESSION OF TRANSIENT JRNL TITL 2 CONFORMATIONAL STATES. JRNL REF NAT. CHEM. BIOL. V. 9 462 2013 JRNL REFN ESSN 1552-4469 JRNL PMID 23644478 JRNL DOI 10.1038/NCHEMBIO.1250 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BH9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1290056340. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 500 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA; HNCACB; HNCO; HNCOCA; 3D REMARK 210 -15N-NOESY; 3D-13C-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS; REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 -177.38 63.81 REMARK 500 1 THR A 7 55.25 -100.44 REMARK 500 1 HIS A 21 164.43 176.63 REMARK 500 1 LYS A 22 -119.30 -167.60 REMARK 500 1 SER A 25 -168.59 57.31 REMARK 500 1 LYS A 26 -41.38 79.14 REMARK 500 1 HIS A 31 100.71 178.62 REMARK 500 1 GLN A 32 -57.37 179.28 REMARK 500 1 LYS A 35 106.03 -39.23 REMARK 500 1 GLU A 37 -58.37 70.87 REMARK 500 1 ILE A 42 96.70 -68.20 REMARK 500 1 GLN A 66 103.12 -55.10 REMARK 500 1 GLU A 81 54.55 -151.29 REMARK 500 1 ARG A 82 90.88 -32.92 REMARK 500 1 ALA A 84 153.79 175.86 REMARK 500 1 TRP A 85 -49.04 174.41 REMARK 500 1 ALA A 88 99.31 -67.90 REMARK 500 1 ALA A 91 108.06 -51.01 REMARK 500 1 THR A 140 101.23 -59.05 REMARK 500 1 ASP A 192 32.31 -82.86 REMARK 500 1 GLN A 193 35.52 70.82 REMARK 500 1 LEU A 195 -87.01 -138.35 REMARK 500 1 HIS A 199 24.60 -146.99 REMARK 500 2 GLN A 6 87.84 58.05 REMARK 500 2 THR A 7 -71.83 -71.38 REMARK 500 2 HIS A 21 142.23 -178.13 REMARK 500 2 LYS A 22 -132.81 -144.93 REMARK 500 2 SER A 25 -174.49 63.80 REMARK 500 2 LYS A 26 -20.24 72.29 REMARK 500 2 LEU A 29 -52.76 -142.31 REMARK 500 2 HIS A 31 -76.48 -162.86 REMARK 500 2 ALA A 36 -74.84 50.27 REMARK 500 2 GLU A 37 -50.78 81.37 REMARK 500 2 SER A 62 -166.50 -165.08 REMARK 500 2 GLN A 66 108.75 -40.61 REMARK 500 2 GLN A 80 39.07 -82.68 REMARK 500 2 ARG A 82 -36.69 -180.00 REMARK 500 2 SER A 83 -63.90 67.32 REMARK 500 2 ALA A 84 127.59 72.36 REMARK 500 2 TRP A 85 -27.84 177.88 REMARK 500 2 ALA A 91 96.33 -60.79 REMARK 500 2 LEU A 127 -65.26 -91.02 REMARK 500 2 LYS A 130 -68.46 -99.62 REMARK 500 2 VAL A 131 4.60 48.67 REMARK 500 2 ASN A 133 -42.79 -157.43 REMARK 500 2 LEU A 137 -45.84 81.19 REMARK 500 2 CYS A 178 -161.27 -107.41 REMARK 500 2 LEU A 195 -80.00 -122.32 REMARK 500 2 SER A 197 73.11 -115.39 REMARK 500 2 THR A 208 47.92 -90.35 REMARK 500 REMARK 500 THIS ENTRY HAS 498 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BHP RELATED DB: PDB REMARK 900 A STRUCTURAL MODEL OF CAP MUTANT (T127L AND S128I) IN CGMP-BOUND REMARK 900 STATE REMARK 900 RELATED ID: 19144 RELATED DB: BMRB DBREF 4BH9 A 1 209 UNP P0ACJ8 CRP_ECOLI 2 210 SEQADV 4BH9 LEU A 127 UNP P0ACJ8 THR 128 ENGINEERED MUTATION SEQADV 4BH9 ILE A 128 UNP P0ACJ8 SER 129 ENGINEERED MUTATION SEQRES 1 A 209 VAL LEU GLY LYS PRO GLN THR ASP PRO THR LEU GLU TRP SEQRES 2 A 209 PHE LEU SER HIS CYS HIS ILE HIS LYS TYR PRO SER LYS SEQRES 3 A 209 SER THR LEU ILE HIS GLN GLY GLU LYS ALA GLU THR LEU SEQRES 4 A 209 TYR TYR ILE VAL LYS GLY SER VAL ALA VAL LEU ILE LYS SEQRES 5 A 209 ASP GLU GLU GLY LYS GLU MET ILE LEU SER TYR LEU ASN SEQRES 6 A 209 GLN GLY ASP PHE ILE GLY GLU LEU GLY LEU PHE GLU GLU SEQRES 7 A 209 GLY GLN GLU ARG SER ALA TRP VAL ARG ALA LYS THR ALA SEQRES 8 A 209 CYS GLU VAL ALA GLU ILE SER TYR LYS LYS PHE ARG GLN SEQRES 9 A 209 LEU ILE GLN VAL ASN PRO ASP ILE LEU MET ARG LEU SER SEQRES 10 A 209 ALA GLN MET ALA ARG ARG LEU GLN VAL LEU ILE GLU LYS SEQRES 11 A 209 VAL GLY ASN LEU ALA PHE LEU ASP VAL THR GLY ARG ILE SEQRES 12 A 209 ALA GLN THR LEU LEU ASN LEU ALA LYS GLN PRO ASP ALA SEQRES 13 A 209 MET THR HIS PRO ASP GLY MET GLN ILE LYS ILE THR ARG SEQRES 14 A 209 GLN GLU ILE GLY GLN ILE VAL GLY CYS SER ARG GLU THR SEQRES 15 A 209 VAL GLY ARG ILE LEU LYS MET LEU GLU ASP GLN ASN LEU SEQRES 16 A 209 ILE SER ALA HIS GLY LYS THR ILE VAL VAL TYR GLY THR SEQRES 17 A 209 ARG HELIX 1 1 ASP A 8 SER A 16 1 9 HELIX 2 2 GLY A 71 PHE A 76 1 6 HELIX 3 3 TYR A 99 ASN A 109 1 11 HELIX 4 4 PRO A 110 VAL A 131 1 22 HELIX 5 5 GLY A 141 LEU A 150 1 10 HELIX 6 6 ALA A 151 GLN A 153 5 3 HELIX 7 7 THR A 168 VAL A 176 1 9 HELIX 8 8 SER A 179 ASP A 192 1 14 SHEET 1 AA 4 HIS A 19 TYR A 23 0 SHEET 2 AA 4 CYS A 92 SER A 98 -1 O CYS A 92 N TYR A 23 SHEET 3 AA 4 THR A 38 LYS A 44 -1 O LEU A 39 N ILE A 97 SHEET 4 AA 4 PHE A 69 ILE A 70 -1 O ILE A 70 N TYR A 40 SHEET 1 AB 4 THR A 28 ILE A 30 0 SHEET 2 AB 4 TRP A 85 ARG A 87 -1 N TRP A 85 O ILE A 30 SHEET 3 AB 4 SER A 46 LYS A 52 -1 O ALA A 48 N ARG A 87 SHEET 4 AB 4 GLU A 58 ASN A 65 -1 O MET A 59 N ILE A 51 SHEET 1 AC 4 ALA A 156 THR A 158 0 SHEET 2 AC 4 MET A 163 ILE A 165 -1 O GLN A 164 N MET A 157 SHEET 3 AC 4 ILE A 203 VAL A 205 -1 O ILE A 203 N ILE A 165 SHEET 4 AC 4 SER A 197 ALA A 198 -1 O SER A 197 N VAL A 204 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1