HEADER TOXIN 09-APR-13 4BI8 TITLE CRYSTAL STRUCTURE OF THE TYPE VI EFFECTOR-IMMUNITY COMPLEX SSP1-RAP1A TITLE 2 FROM SERRATIA MARCESCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAP1A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SSSP1; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 STRAIN: DB10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PACYCDUET-1; SOURCE 10 OTHER_DETAILS: SEQUENCE DATA NOT AVAILABLE IN UNIPROT DATABASE; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 13 ORGANISM_TAXID: 615; SOURCE 14 STRAIN: DB10; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: PACYCDUET-1; SOURCE 20 OTHER_DETAILS: SEQUENCE DATA NOT AVAILABLE IN UNIPROT DATABASE KEYWDS TOXIN, PROTEIN RAP1A COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.SRIKANNATHASAN,S.J.COULTHURST,W.N.HUNTER REVDAT 4 20-DEC-23 4BI8 1 SHEET REVDAT 3 18-DEC-13 4BI8 1 JRNL REVDAT 2 11-DEC-13 4BI8 1 JRNL REVDAT 1 19-JUN-13 4BI8 0 JRNL AUTH V.SRIKANNATHASAN,G.ENGLISH,N.K.BUI,K.TRUNK,P.E.F.O.ROURKE, JRNL AUTH 2 V.A.RAO,W.VOLLMER,S.J.COULTHURST,W.N.HUNTER JRNL TITL STRUCTURAL BASIS FOR TYPE VI SECRETED PEPTIDOGLYCAN JRNL TITL 2 DL-ENDOPEPTIDASE FUNCTION, SPECIFICITY AND NEUTRALIZATION IN JRNL TITL 3 SERRATIA MARCESCENS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 2468 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 24311588 JRNL DOI 10.1107/S0907444913022725 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 882 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1097 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.711 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2115 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2857 ; 1.009 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 4.902 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;35.171 ;23.918 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;14.766 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.825 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1606 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): -25.5932 11.0522 -31.4528 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.0258 REMARK 3 T33: 0.0587 T12: 0.0060 REMARK 3 T13: -0.0142 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.1945 L22: 0.7150 REMARK 3 L33: 2.5765 L12: 0.1863 REMARK 3 L13: -0.4079 L23: 0.2734 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: 0.0909 S13: 0.0683 REMARK 3 S21: -0.0785 S22: 0.0083 S23: 0.1233 REMARK 3 S31: -0.3752 S32: -0.0473 S33: 0.0263 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): -32.5958 6.8743 -23.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0487 REMARK 3 T33: 0.0269 T12: 0.0221 REMARK 3 T13: 0.0022 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 6.8953 L22: 5.2376 REMARK 3 L33: 3.9355 L12: 0.2498 REMARK 3 L13: 0.5861 L23: 0.8872 REMARK 3 S TENSOR REMARK 3 S11: -0.2375 S12: 0.0376 S13: 0.0442 REMARK 3 S21: -0.0648 S22: 0.0617 S23: 0.3002 REMARK 3 S31: -0.1063 S32: -0.2677 S33: 0.1757 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5928 3.9011 -21.8321 REMARK 3 T TENSOR REMARK 3 T11: 0.0379 T22: 0.0565 REMARK 3 T33: 0.0372 T12: -0.0066 REMARK 3 T13: -0.0037 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.3609 L22: 1.0059 REMARK 3 L33: 0.9750 L12: 0.0457 REMARK 3 L13: 0.1616 L23: -0.2838 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0305 S13: 0.0070 REMARK 3 S21: 0.0635 S22: -0.0280 S23: -0.0122 REMARK 3 S31: -0.0781 S32: 0.1090 S33: 0.0406 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3543 0.8238 -16.1443 REMARK 3 T TENSOR REMARK 3 T11: 0.0518 T22: 0.1252 REMARK 3 T33: 0.0446 T12: -0.0439 REMARK 3 T13: -0.0195 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 8.8102 L22: 9.9253 REMARK 3 L33: 9.8310 L12: 0.8616 REMARK 3 L13: -1.6737 L23: -1.3030 REMARK 3 S TENSOR REMARK 3 S11: 0.3009 S12: -0.3265 S13: 0.2920 REMARK 3 S21: 0.5280 S22: -0.1547 S23: -0.2018 REMARK 3 S31: -0.2574 S32: 0.7423 S33: -0.1462 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): -39.8186 -3.9205 2.9437 REMARK 3 T TENSOR REMARK 3 T11: 0.0380 T22: 0.1799 REMARK 3 T33: 0.1028 T12: 0.0500 REMARK 3 T13: 0.0290 T23: 0.0703 REMARK 3 L TENSOR REMARK 3 L11: 8.7330 L22: 6.7233 REMARK 3 L33: 16.7069 L12: 3.2603 REMARK 3 L13: -4.9414 L23: 6.9009 REMARK 3 S TENSOR REMARK 3 S11: 0.3231 S12: 0.0938 S13: 0.1250 REMARK 3 S21: 0.3530 S22: -0.0798 S23: -0.0596 REMARK 3 S31: 0.2051 S32: -0.3412 S33: -0.2433 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6648 0.6955 -0.5563 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.0236 REMARK 3 T33: 0.0179 T12: -0.0328 REMARK 3 T13: 0.0046 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.0886 L22: 0.4106 REMARK 3 L33: 1.9216 L12: 0.0019 REMARK 3 L13: 0.1553 L23: 0.1946 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.0160 S13: 0.0083 REMARK 3 S21: 0.1992 S22: -0.0467 S23: 0.0083 REMARK 3 S31: -0.1315 S32: 0.1111 S33: 0.0305 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): -29.4923 -15.1159 -1.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.0214 REMARK 3 T33: 0.0495 T12: 0.0020 REMARK 3 T13: 0.0015 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.1570 L22: 2.9107 REMARK 3 L33: 1.1788 L12: 1.1370 REMARK 3 L13: 0.1854 L23: 1.6106 REMARK 3 S TENSOR REMARK 3 S11: 0.1028 S12: -0.0437 S13: -0.0899 REMARK 3 S21: 0.2839 S22: -0.0677 S23: -0.0752 REMARK 3 S31: 0.1368 S32: -0.0316 S33: -0.0351 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 112 B 163 REMARK 3 ORIGIN FOR THE GROUP (A): -33.2160 -10.4211 -10.2313 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.0366 REMARK 3 T33: 0.0461 T12: 0.0135 REMARK 3 T13: 0.0099 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.9479 L22: 1.1466 REMARK 3 L33: 1.5990 L12: 0.3063 REMARK 3 L13: -0.7932 L23: 0.2306 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.0913 S13: 0.0013 REMARK 3 S21: -0.0164 S22: -0.0900 S23: 0.1412 REMARK 3 S31: 0.0025 S32: -0.0789 S33: 0.0567 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BI8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 HG REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17462 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 28.20 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 25.20 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 4BI3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% PEG1K, 12.5% PEG3350 AND 12.5% REMARK 280 MPD. 20% GLYCEROL AS A CRYO-PROTECTANT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.68000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.84000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.84000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2036 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 27 REMARK 465 GLN A 28 REMARK 465 THR A 29 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 LYS A 126 REMARK 465 ALA A 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2029 O HOH A 2030 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 95 69.77 -167.06 REMARK 500 LYS B 125 77.16 65.14 REMARK 500 ASN B 141 -122.92 56.49 REMARK 500 HIS B 149 138.24 -172.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BI3 RELATED DB: PDB REMARK 900 STRUCTURE AND FUNCTION OF AMIDASE TOXIN - ANTITOXIN COMBINATIONS REMARK 900 ASSOCIATED WITH THE TYPE VI SECRETION SYSTEM OF SERRATIA MARCESCENS. REMARK 900 RELATED ID: 4BI4 RELATED DB: PDB REMARK 900 STRUCTURE AND FUNCTION OF AMIDASE TOXIN - ANTITOXIN COMBINATIONS REMARK 900 ASSOCIATED WITH THE TYPE VI SECRETION SYSTEM OF SERRATIA MARCESCENS. DBREF 4BI8 B 1 163 PDB 4BI8 4BI8 1 163 DBREF 4BI8 A 27 127 PDB 4BI8 4BI8 27 127 SEQRES 1 A 101 GLU GLN THR SER ILE ALA HIS LEU THR SER ASP ASP VAL SEQRES 2 A 101 ASN LEU PRO GLY SER ASP PHE PHE ARG PHE TYR ARG SER SEQRES 3 A 101 ALA ASP LYS GLN GLU LYS GLU LYS ALA ARG ILE TYR LEU SEQRES 4 A 101 LEU GLY VAL LEU ASP ALA THR GLU GLY LYS SER TRP CYS SEQRES 5 A 101 GLN TYR SER GLN LEU GLN THR VAL THR LEU GLN GLU PHE SEQRES 6 A 101 VAL PHE GLU PHE PHE ASN LYS LEU PRO ALA ALA ARG LEU SEQRES 7 A 101 HIS GLU ARG ALA ALA PRO LEU ILE GLU GLU ALA LEU ALA SEQRES 8 A 101 THR ARG PHE PRO CYS LYS GLY GLY LYS ALA SEQRES 1 B 163 MET LYS PRO LEU TYR ARG GLN LEU LYS SER SER HIS TYR SEQRES 2 B 163 SER SER ASP TYR SER SER PRO GLY TYR LEU ALA ALA GLU SEQRES 3 B 163 ALA VAL TYR ALA GLU ILE GLY TYR GLU LEU ASP THR LEU SEQRES 4 B 163 LEU LYS GLN ASN PRO GLY TYR ALA ASN THR CYS ALA VAL SEQRES 5 B 163 ARG MET SER LEU ALA LEU LEU LYS THR GLY ILE SER PHE SEQRES 6 B 163 LYS GLY ARG LEU PRO ILE LYS LYS GLY ALA TYR LYS GLY SEQRES 7 B 163 LYS THR ILE GLU PRO GLY ALA LYS LEU LEU ALA ASP GLN SEQRES 8 B 163 LEU HIS ARG SER SER SER PHE GLY LYS ALA LYS ILE PHE SEQRES 9 B 163 PHE ASN ALA PRO ASP ALA GLU LYS GLY ILE GLY ASN LYS SEQRES 10 B 163 LYS GLY VAL VAL PHE PHE ASN LYS ILE THR ASN TYR ASP SEQRES 11 B 163 GLY GLY HIS ILE ASP LEU ILE GLU PRO GLU ASN SER LEU SEQRES 12 B 163 LEU THR CYS HIS SER HIS CYS TYR PHE ASN CYS LYS GLU SEQRES 13 B 163 VAL TRP PHE TRP GLU LEU SER FORMUL 3 HOH *192(H2 O) HELIX 1 8 PRO A 42 ARG A 51 1 10 HELIX 2 9 ASP A 54 GLU A 73 1 20 HELIX 3 10 TYR A 80 GLN A 82 5 3 HELIX 4 11 THR A 85 LYS A 98 1 14 HELIX 5 12 ALA A 101 HIS A 105 5 5 HELIX 6 13 ALA A 108 ARG A 119 1 12 HELIX 7 1 LEU B 8 SER B 11 1 4 HELIX 8 2 ALA B 25 ILE B 32 1 8 HELIX 9 3 LEU B 36 GLN B 42 1 7 HELIX 10 4 PRO B 44 ALA B 47 5 4 HELIX 11 5 THR B 49 THR B 61 1 13 HELIX 12 6 ALA B 85 ARG B 94 1 10 HELIX 13 7 ALA B 107 ILE B 114 1 8 SHEET 1 1 1 ARG B 68 ILE B 71 0 SHEET 1 2 1 GLY B 78 ILE B 81 0 SHEET 1 3 1 LYS B 102 PHE B 104 0 SHEET 1 4 1 GLY B 119 ASN B 124 0 SHEET 1 5 1 HIS B 133 GLU B 140 0 SHEET 1 6 1 LEU B 143 CYS B 146 0 SHEET 1 7 1 LYS B 155 GLU B 161 0 SSBOND 1 CYS A 78 CYS A 122 1555 1555 2.05 SSBOND 2 CYS B 146 CYS B 150 1555 1555 2.06 CISPEP 1 CYS A 78 GLN A 79 0 -8.56 CRYST1 68.470 68.470 92.520 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014605 0.008432 0.000000 0.00000 SCALE2 0.000000 0.016864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010808 0.00000