HEADER TRANSFERASE 13-APR-13 4BIX TITLE CRYSTAL STRUCTURE OF CPXAHDC (MONOCLINIC FORM 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN CPXA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CYTOPLASMIC REGION, RESIDUES 188-457; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BLI5 KEYWDS TRANSFERASE, SIGNAL TRANSDUCTION, TWO-COMPONENTS SYSTEMS, HISTIDINE KEYWDS 2 KINASES EXPDTA X-RAY DIFFRACTION AUTHOR A.E.MECHALY,N.SASSOON,J.M.BETTON,P.M.ALZARI REVDAT 2 08-MAY-24 4BIX 1 REMARK LINK REVDAT 1 12-FEB-14 4BIX 0 JRNL AUTH A.E.MECHALY,N.SASSOON,J.M.BETTON,P.M.ALZARI JRNL TITL SEGMENTAL HELICAL MOTIONS AND DYNAMICAL ASYMMETRY MODULATE JRNL TITL 2 HISTIDINE KINASE AUTOPHOSPHORYLATION. JRNL REF PLOS BIOL. V. 12 1776 2014 JRNL REFN ISSN 1544-9173 JRNL PMID 24492262 JRNL DOI 10.1371/JOURNAL.PBIO.1001776 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 49073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2486 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3594 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2327 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3428 REMARK 3 BIN R VALUE (WORKING SET) : 0.2326 REMARK 3 BIN FREE R VALUE : 0.2338 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 166 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3577 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.20400 REMARK 3 B22 (A**2) : 11.28090 REMARK 3 B33 (A**2) : -3.07700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -9.77060 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.134 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.122 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.133 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.122 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3670 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4978 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1739 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 106 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 534 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3670 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 479 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4494 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.05 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.09 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 9.4209 -27.2008 9.0485 REMARK 3 T TENSOR REMARK 3 T11: -0.0243 T22: -0.1050 REMARK 3 T33: -0.0329 T12: 0.0532 REMARK 3 T13: 0.0635 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.7865 L22: 1.1476 REMARK 3 L33: 1.3817 L12: -0.3160 REMARK 3 L13: -0.2368 L23: 0.3203 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: -0.1758 S13: -0.1701 REMARK 3 S21: 0.2244 S22: -0.0302 S23: -0.1912 REMARK 3 S31: 0.2342 S32: 0.2791 S33: 0.1298 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 10.6073 3.4483 7.3861 REMARK 3 T TENSOR REMARK 3 T11: 0.0404 T22: -0.1239 REMARK 3 T33: -0.0558 T12: -0.0816 REMARK 3 T13: 0.0580 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.5444 L22: 1.0846 REMARK 3 L33: 0.8980 L12: 1.1415 REMARK 3 L13: -0.5446 L23: -0.3409 REMARK 3 S TENSOR REMARK 3 S11: 0.3235 S12: -0.2172 S13: 0.3414 REMARK 3 S21: 0.1472 S22: -0.2295 S23: 0.1131 REMARK 3 S31: -0.4277 S32: 0.1783 S33: -0.0940 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4BIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.991 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49075 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.59300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.59300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 70.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2014 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 160 REMARK 465 GLY A 161 REMARK 465 SER A 162 REMARK 465 SER A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 SER A 170 REMARK 465 SER A 171 REMARK 465 GLY A 172 REMARK 465 LEU A 173 REMARK 465 VAL A 174 REMARK 465 PRO A 175 REMARK 465 ARG A 176 REMARK 465 GLY A 177 REMARK 465 SER A 178 REMARK 465 HIS A 179 REMARK 465 MET A 180 REMARK 465 GLU A 181 REMARK 465 ASN A 182 REMARK 465 LEU A 183 REMARK 465 TYR A 184 REMARK 465 PHE A 185 REMARK 465 GLN A 186 REMARK 465 GLY A 187 REMARK 465 LYS A 188 REMARK 465 PRO A 189 REMARK 465 ALA A 190 REMARK 465 ARG A 191 REMARK 465 LYS A 192 REMARK 465 LEU A 193 REMARK 465 LYS A 194 REMARK 465 ASN A 195 REMARK 465 ALA A 196 REMARK 465 ALA A 197 REMARK 465 ASP A 198 REMARK 465 GLU A 199 REMARK 465 VAL A 200 REMARK 465 ALA A 201 REMARK 465 GLN A 202 REMARK 465 GLY A 203 REMARK 465 ASN A 204 REMARK 465 LEU A 205 REMARK 465 ARG A 206 REMARK 465 GLN A 207 REMARK 465 HIS A 208 REMARK 465 PRO A 209 REMARK 465 GLU A 210 REMARK 465 LEU A 211 REMARK 465 GLU A 212 REMARK 465 ALA A 213 REMARK 465 GLY A 214 REMARK 465 PRO A 215 REMARK 465 GLN A 216 REMARK 465 GLU A 217 REMARK 465 PHE A 218 REMARK 465 LEU A 219 REMARK 465 GLU A 408 REMARK 465 ALA A 409 REMARK 465 ARG A 410 REMARK 465 ASP A 411 REMARK 465 ARG A 412 REMARK 465 GLU A 413 REMARK 465 SER A 414 REMARK 465 GLY A 415 REMARK 465 SER A 457 REMARK 465 MET B 160 REMARK 465 GLY B 161 REMARK 465 SER B 162 REMARK 465 SER B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 HIS B 168 REMARK 465 HIS B 169 REMARK 465 SER B 170 REMARK 465 SER B 171 REMARK 465 GLY B 172 REMARK 465 LEU B 173 REMARK 465 VAL B 174 REMARK 465 PRO B 175 REMARK 465 ARG B 176 REMARK 465 GLY B 177 REMARK 465 SER B 178 REMARK 465 HIS B 179 REMARK 465 MET B 180 REMARK 465 GLU B 181 REMARK 465 ASN B 182 REMARK 465 LEU B 183 REMARK 465 TYR B 184 REMARK 465 PHE B 185 REMARK 465 GLN B 186 REMARK 465 GLY B 187 REMARK 465 LYS B 188 REMARK 465 PRO B 189 REMARK 465 ALA B 190 REMARK 465 ARG B 191 REMARK 465 LYS B 192 REMARK 465 LEU B 193 REMARK 465 LYS B 194 REMARK 465 ASN B 195 REMARK 465 ALA B 196 REMARK 465 ALA B 197 REMARK 465 ASP B 198 REMARK 465 GLU B 199 REMARK 465 VAL B 200 REMARK 465 ALA B 201 REMARK 465 GLN B 202 REMARK 465 GLY B 203 REMARK 465 ASN B 204 REMARK 465 LEU B 205 REMARK 465 ARG B 206 REMARK 465 GLN B 207 REMARK 465 HIS B 208 REMARK 465 PRO B 209 REMARK 465 GLU B 210 REMARK 465 LEU B 211 REMARK 465 GLU B 212 REMARK 465 ALA B 213 REMARK 465 GLY B 214 REMARK 465 PRO B 215 REMARK 465 GLN B 216 REMARK 465 GLU B 217 REMARK 465 PHE B 218 REMARK 465 LEU B 219 REMARK 465 ALA B 220 REMARK 465 ALA B 221 REMARK 465 GLY B 222 REMARK 465 GLU B 408 REMARK 465 ALA B 409 REMARK 465 ARG B 410 REMARK 465 ASP B 411 REMARK 465 ARG B 412 REMARK 465 GLU B 413 REMARK 465 SER B 414 REMARK 465 GLY B 415 REMARK 465 ARG B 456 REMARK 465 SER B 457 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 402 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 267 -77.87 -84.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1457 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 364 OH REMARK 620 2 ADP A 501 O3A 120.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1457 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1456 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BIU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (ORTHORHOMBIC FORM 1) REMARK 900 RELATED ID: 4BIV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (TRIGONAL FORM) REMARK 900 RELATED ID: 4BIW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (HEXAGONAL FORM) REMARK 900 RELATED ID: 4BIY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (MONOCLINIC FORM 2) REMARK 900 RELATED ID: 4BIZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CPXAHDC (ORTHORHOMBIC FORM 2) DBREF 4BIX A 188 457 UNP P0AE82 CPXA_ECOLI 188 457 DBREF 4BIX B 188 457 UNP P0AE82 CPXA_ECOLI 188 457 SEQADV 4BIX MET A 160 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLY A 161 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX SER A 162 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX SER A 163 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS A 164 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS A 165 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS A 166 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS A 167 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS A 168 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS A 169 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX SER A 170 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX SER A 171 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLY A 172 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX LEU A 173 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX VAL A 174 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX PRO A 175 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX ARG A 176 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLY A 177 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX SER A 178 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS A 179 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX MET A 180 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLU A 181 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX ASN A 182 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX LEU A 183 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX TYR A 184 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX PHE A 185 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLN A 186 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLY A 187 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX VAL A 228 UNP P0AE82 MET 228 CONFLICT SEQADV 4BIX MET B 160 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLY B 161 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX SER B 162 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX SER B 163 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS B 164 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS B 165 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS B 166 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS B 167 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS B 168 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS B 169 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX SER B 170 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX SER B 171 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLY B 172 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX LEU B 173 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX VAL B 174 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX PRO B 175 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX ARG B 176 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLY B 177 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX SER B 178 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX HIS B 179 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX MET B 180 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLU B 181 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX ASN B 182 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX LEU B 183 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX TYR B 184 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX PHE B 185 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLN B 186 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX GLY B 187 UNP P0AE82 EXPRESSION TAG SEQADV 4BIX VAL B 228 UNP P0AE82 MET 228 CONFLICT SEQRES 1 A 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 A 298 GLN GLY LYS PRO ALA ARG LYS LEU LYS ASN ALA ALA ASP SEQRES 4 A 298 GLU VAL ALA GLN GLY ASN LEU ARG GLN HIS PRO GLU LEU SEQRES 5 A 298 GLU ALA GLY PRO GLN GLU PHE LEU ALA ALA GLY ALA SER SEQRES 6 A 298 PHE ASN GLN VAL VAL THR ALA LEU GLU ARG MET MET THR SEQRES 7 A 298 SER GLN GLN ARG LEU LEU SER ASP ILE SER HIS GLU LEU SEQRES 8 A 298 ARG THR PRO LEU THR ARG LEU GLN LEU GLY THR ALA LEU SEQRES 9 A 298 LEU ARG ARG ARG SER GLY GLU SER LYS GLU LEU GLU ARG SEQRES 10 A 298 ILE GLU THR GLU ALA GLN ARG LEU ASP SER MET ILE ASN SEQRES 11 A 298 ASP LEU LEU VAL MET SER ARG ASN GLN GLN LYS ASN ALA SEQRES 12 A 298 LEU VAL SER GLU THR ILE LYS ALA ASN GLN LEU TRP SER SEQRES 13 A 298 GLU VAL LEU ASP ASN ALA ALA PHE GLU ALA GLU GLN MET SEQRES 14 A 298 GLY LYS SER LEU THR VAL ASN PHE PRO PRO GLY PRO TRP SEQRES 15 A 298 PRO LEU TYR GLY ASN PRO ASN ALA LEU GLU SER ALA LEU SEQRES 16 A 298 GLU ASN ILE VAL ARG ASN ALA LEU ARG TYR SER HIS THR SEQRES 17 A 298 LYS ILE GLU VAL GLY PHE ALA VAL ASP LYS ASP GLY ILE SEQRES 18 A 298 THR ILE THR VAL ASP ASP ASP GLY PRO GLY VAL SER PRO SEQRES 19 A 298 GLU ASP ARG GLU GLN ILE PHE ARG PRO PHE TYR ARG THR SEQRES 20 A 298 ASP GLU ALA ARG ASP ARG GLU SER GLY GLY THR GLY LEU SEQRES 21 A 298 GLY LEU ALA ILE VAL GLU THR ALA ILE GLN GLN HIS ARG SEQRES 22 A 298 GLY TRP VAL LYS ALA GLU ASP SER PRO LEU GLY GLY LEU SEQRES 23 A 298 ARG LEU VAL ILE TRP LEU PRO LEU TYR LYS ARG SER SEQRES 1 B 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 298 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 B 298 GLN GLY LYS PRO ALA ARG LYS LEU LYS ASN ALA ALA ASP SEQRES 4 B 298 GLU VAL ALA GLN GLY ASN LEU ARG GLN HIS PRO GLU LEU SEQRES 5 B 298 GLU ALA GLY PRO GLN GLU PHE LEU ALA ALA GLY ALA SER SEQRES 6 B 298 PHE ASN GLN VAL VAL THR ALA LEU GLU ARG MET MET THR SEQRES 7 B 298 SER GLN GLN ARG LEU LEU SER ASP ILE SER HIS GLU LEU SEQRES 8 B 298 ARG THR PRO LEU THR ARG LEU GLN LEU GLY THR ALA LEU SEQRES 9 B 298 LEU ARG ARG ARG SER GLY GLU SER LYS GLU LEU GLU ARG SEQRES 10 B 298 ILE GLU THR GLU ALA GLN ARG LEU ASP SER MET ILE ASN SEQRES 11 B 298 ASP LEU LEU VAL MET SER ARG ASN GLN GLN LYS ASN ALA SEQRES 12 B 298 LEU VAL SER GLU THR ILE LYS ALA ASN GLN LEU TRP SER SEQRES 13 B 298 GLU VAL LEU ASP ASN ALA ALA PHE GLU ALA GLU GLN MET SEQRES 14 B 298 GLY LYS SER LEU THR VAL ASN PHE PRO PRO GLY PRO TRP SEQRES 15 B 298 PRO LEU TYR GLY ASN PRO ASN ALA LEU GLU SER ALA LEU SEQRES 16 B 298 GLU ASN ILE VAL ARG ASN ALA LEU ARG TYR SER HIS THR SEQRES 17 B 298 LYS ILE GLU VAL GLY PHE ALA VAL ASP LYS ASP GLY ILE SEQRES 18 B 298 THR ILE THR VAL ASP ASP ASP GLY PRO GLY VAL SER PRO SEQRES 19 B 298 GLU ASP ARG GLU GLN ILE PHE ARG PRO PHE TYR ARG THR SEQRES 20 B 298 ASP GLU ALA ARG ASP ARG GLU SER GLY GLY THR GLY LEU SEQRES 21 B 298 GLY LEU ALA ILE VAL GLU THR ALA ILE GLN GLN HIS ARG SEQRES 22 B 298 GLY TRP VAL LYS ALA GLU ASP SER PRO LEU GLY GLY LEU SEQRES 23 B 298 ARG LEU VAL ILE TRP LEU PRO LEU TYR LYS ARG SER HET ADP A 501 27 HET MG A1457 1 HET SO4 B1456 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *305(H2 O) HELIX 1 1 ALA A 220 LEU A 250 1 31 HELIX 2 2 LEU A 250 SER A 268 1 19 HELIX 3 3 SER A 271 ASN A 297 1 27 HELIX 4 4 ALA A 310 GLY A 329 1 20 HELIX 5 5 ASN A 346 SER A 365 1 20 HELIX 6 6 SER A 392 ARG A 396 5 5 HELIX 7 7 GLU A 397 ARG A 401 5 5 HELIX 8 8 GLY A 420 HIS A 431 1 12 HELIX 9 9 ALA B 223 SER B 268 1 46 HELIX 10 10 SER B 271 VAL B 304 1 34 HELIX 11 11 ALA B 310 GLY B 329 1 20 HELIX 12 12 ASN B 346 SER B 365 1 20 HELIX 13 13 SER B 392 GLN B 398 1 7 HELIX 14 14 LEU B 421 HIS B 431 1 11 SHEET 1 AA 2 GLU A 306 LYS A 309 0 SHEET 2 AA 2 PRO A 342 GLY A 345 -1 O LEU A 343 N ILE A 308 SHEET 1 AB 5 SER A 331 PHE A 336 0 SHEET 2 AB 5 LYS A 368 VAL A 375 1 O ILE A 369 N THR A 333 SHEET 3 AB 5 GLY A 379 ASP A 386 -1 O THR A 381 N ALA A 374 SHEET 4 AB 5 LEU A 445 PRO A 452 -1 O LEU A 445 N ASP A 386 SHEET 5 AB 5 TRP A 434 ASP A 439 -1 O TRP A 434 N TRP A 450 SHEET 1 BA 2 GLU B 306 LYS B 309 0 SHEET 2 BA 2 PRO B 342 GLY B 345 -1 O LEU B 343 N ILE B 308 SHEET 1 BB 5 SER B 331 PHE B 336 0 SHEET 2 BB 5 LYS B 368 VAL B 375 1 O ILE B 369 N THR B 333 SHEET 3 BB 5 GLY B 379 ASP B 386 -1 O THR B 381 N ALA B 374 SHEET 4 BB 5 LEU B 445 PRO B 452 -1 O LEU B 445 N ASP B 386 SHEET 5 BB 5 TRP B 434 ASP B 439 -1 O TRP B 434 N TRP B 450 LINK OH TYR A 364 MG MG A1457 1555 1555 2.91 LINK O3A ADP A 501 MG MG A1457 1555 1555 2.84 SITE 1 AC1 19 ASN A 360 TYR A 364 ASP A 386 GLY A 390 SITE 2 AC1 19 VAL A 391 TYR A 404 THR A 406 GLY A 420 SITE 3 AC1 19 LEU A 421 LEU A 445 MG A1457 HOH A2102 SITE 4 AC1 19 HOH A2105 HOH A2123 HOH A2144 HOH A2145 SITE 5 AC1 19 HOH A2148 HOH A2150 HOH A2174 SITE 1 AC2 4 ASN A 360 ARG A 363 TYR A 364 ADP A 501 SITE 1 AC3 7 ARG A 283 ARG A 432 HOH A2161 ARG B 234 SITE 2 AC3 7 ARG B 256 HOH B2006 HOH B2131 CRYST1 95.186 141.800 55.214 90.00 94.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010506 0.000000 0.000795 0.00000 SCALE2 0.000000 0.007052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018163 0.00000