HEADER DNA BINDING PROTEIN 15-APR-13 4BJ1
TITLE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE RIF2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTEIN RIF2;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: RESIDUES 65-380;
COMPND 5 SYNONYM: RAP1-INTERACTING FACTOR 2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE;
SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST;
SOURCE 4 ORGANISM_TAXID: 559292;
SOURCE 5 STRAIN: S288C;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX BASED
KEYWDS DNA BINDING PROTEIN, GENOME STABILITY, TELOMERE ASSOCIATED PROTEINS,
KEYWDS 2 AAA+ FOLD
EXPDTA X-RAY DIFFRACTION
AUTHOR T.SHI,R.D.BUNKER,H.GUT,A.SCRIMA,N.H.THOMA
REVDAT 2 08-MAY-24 4BJ1 1 REMARK
REVDAT 1 19-JUN-13 4BJ1 0
JRNL AUTH T.SHI,R.D.BUNKER,S.MATTAROCCI,C.RIBEYRE,M.FATY,H.GUT,
JRNL AUTH 2 A.SCRIMA,U.RASS,S.M.RUBIN,D.SHORE,N.H.THOMA
JRNL TITL RIF1 AND RIF2 SHAPE TELOMERE FUNCATION AND ARCHITECTURE
JRNL TITL 2 THROUGH MULTIVALENT RAP1 INTERACTIONS
JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 1340 2013
JRNL REFN ISSN 0092-8674
JRNL PMID 23746845
JRNL DOI 10.1016/J.CELL.2013.05.007
REMARK 2
REMARK 2 RESOLUTION. 2.94 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.4
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.65
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 3 NUMBER OF REFLECTIONS : 9795
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.199
REMARK 3 R VALUE (WORKING SET) : 0.197
REMARK 3 FREE R VALUE : 0.229
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.610
REMARK 3 FREE R VALUE TEST SET COUNT : 452
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 5
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.29
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2694
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2216
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2579
REMARK 3 BIN R VALUE (WORKING SET) : 0.2186
REMARK 3 BIN FREE R VALUE : 0.2878
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.27
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 115
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2085
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 1
REMARK 3 SOLVENT ATOMS : 2
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 105.5
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.39
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -6.78200
REMARK 3 B22 (A**2) : -6.78200
REMARK 3 B33 (A**2) : 13.56400
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.497
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.881
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.314
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.696
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.310
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 2124 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 2872 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 734 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 52 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 298 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 2124 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 292 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2466 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.16
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.68
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.96
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|68 - 103 }
REMARK 3 ORIGIN FOR THE GROUP (A): 29.7237 21.5197 19.2521
REMARK 3 T TENSOR
REMARK 3 T11: 0.0504 T22: -0.0648
REMARK 3 T33: -0.1637 T12: -0.0204
REMARK 3 T13: -0.0962 T23: 0.0401
REMARK 3 L TENSOR
REMARK 3 L11: 2.6528 L22: 2.5719
REMARK 3 L33: 7.3817 L12: -2.3188
REMARK 3 L13: -2.1092 L23: 0.3493
REMARK 3 S TENSOR
REMARK 3 S11: -0.0623 S12: 0.3147 S13: -0.4855
REMARK 3 S21: -0.2255 S22: -0.1251 S23: 0.0221
REMARK 3 S31: -0.4326 S32: -0.5930 S33: 0.1874
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { A|104 - 205 }
REMARK 3 ORIGIN FOR THE GROUP (A): 24.7774 25.4190 40.8156
REMARK 3 T TENSOR
REMARK 3 T11: -0.1603 T22: -0.0111
REMARK 3 T33: -0.1154 T12: 0.0608
REMARK 3 T13: 0.1505 T23: 0.1173
REMARK 3 L TENSOR
REMARK 3 L11: 2.2323 L22: 12.0966
REMARK 3 L33: 6.8865 L12: -4.7475
REMARK 3 L13: -2.7613 L23: 5.1271
REMARK 3 S TENSOR
REMARK 3 S11: -0.3793 S12: -0.3744 S13: 0.0117
REMARK 3 S21: -0.2658 S22: 0.6888 S23: 0.2206
REMARK 3 S31: -0.4164 S32: 0.3591 S33: -0.3094
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { A|206 - 269 }
REMARK 3 ORIGIN FOR THE GROUP (A): 21.2847 20.0878 47.9521
REMARK 3 T TENSOR
REMARK 3 T11: 0.0265 T22: 0.0965
REMARK 3 T33: -0.1060 T12: 0.2064
REMARK 3 T13: 0.2687 T23: 0.1426
REMARK 3 L TENSOR
REMARK 3 L11: 2.8888 L22: 9.0407
REMARK 3 L33: 5.3811 L12: -1.4138
REMARK 3 L13: -3.4488 L23: 2.4345
REMARK 3 S TENSOR
REMARK 3 S11: -0.4597 S12: -0.6268 S13: -0.4130
REMARK 3 S21: 0.9064 S22: 0.1196 S23: 0.7879
REMARK 3 S31: 0.7637 S32: 0.1447 S33: 0.3400
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: { A|270 - 373 }
REMARK 3 ORIGIN FOR THE GROUP (A): 34.8750 10.4262 15.4224
REMARK 3 T TENSOR
REMARK 3 T11: 0.0377 T22: -0.2276
REMARK 3 T33: -0.1413 T12: -0.0520
REMARK 3 T13: -0.0557 T23: 0.0665
REMARK 3 L TENSOR
REMARK 3 L11: 3.9107 L22: 2.4201
REMARK 3 L33: 4.0338 L12: -0.3907
REMARK 3 L13: -2.2393 L23: 0.4329
REMARK 3 S TENSOR
REMARK 3 S11: -0.0383 S12: 0.1863 S13: -0.7111
REMARK 3 S21: -0.4010 S22: -0.1766 S23: 0.3427
REMARK 3 S31: 0.6716 S32: -0.0957 S33: 0.2149
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP.
REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY
REMARK 4
REMARK 4 4BJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-13.
REMARK 100 THE DEPOSITION ID IS D_1290056518.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-AUG-09
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X10SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000
REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111)
REMARK 200 MONOCHROMATOR
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9796
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940
REMARK 200 RESOLUTION RANGE LOW (A) : 44.500
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : 7.900
REMARK 200 R MERGE (I) : 0.05000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.94
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7
REMARK 200 DATA REDUNDANCY IN SHELL : 8.00
REMARK 200 R MERGE FOR SHELL (I) : 0.54000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD
REMARK 200 SOFTWARE USED: SHARP
REMARK 200 STARTING MODEL: NONE
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 0.64
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 14-20% 1,4-BUTANEDIOL, 100 MM NA
REMARK 280 ACETATE PH 5.1
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/6
REMARK 290 6555 X-Y,X,Z+5/6
REMARK 290 7555 Y,X,-Z+2/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+1/3
REMARK 290 10555 -Y,-X,-Z+1/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+5/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.47333
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.73667
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.10500
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.36833
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 196.84167
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 157.47333
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 78.73667
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.36833
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 118.10500
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 196.84167
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 23140 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.5 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 39.18000
REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 67.86175
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.36833
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 62
REMARK 465 GLY A 63
REMARK 465 GLY A 64
REMARK 465 ARG A 65
REMARK 465 VAL A 66
REMARK 465 ASP A 67
REMARK 465 GLU A 152
REMARK 465 GLY A 153
REMARK 465 ILE A 154
REMARK 465 GLN A 155
REMARK 465 SER A 156
REMARK 465 SER A 157
REMARK 465 LYS A 158
REMARK 465 SER A 159
REMARK 465 LYS A 160
REMARK 465 GLU A 161
REMARK 465 CYS A 162
REMARK 465 ILE A 163
REMARK 465 GLU A 164
REMARK 465 SER A 165
REMARK 465 MET A 166
REMARK 465 GLY A 167
REMARK 465 GLN A 168
REMARK 465 ALA A 169
REMARK 465 SER A 170
REMARK 465 TYR A 171
REMARK 465 SER A 172
REMARK 465 GLY A 173
REMARK 465 GLN A 174
REMARK 465 LEU A 175
REMARK 465 ASP A 176
REMARK 465 PHE A 177
REMARK 465 GLU A 178
REMARK 465 ALA A 179
REMARK 465 SER A 180
REMARK 465 GLU A 181
REMARK 465 LYS A 182
REMARK 465 PRO A 183
REMARK 465 SER A 184
REMARK 465 ASN A 185
REMARK 465 HIS A 186
REMARK 465 LEU A 218
REMARK 465 SER A 219
REMARK 465 THR A 220
REMARK 465 SER A 221
REMARK 465 THR A 222
REMARK 465 ILE A 223
REMARK 465 ASN A 255
REMARK 465 VAL A 256
REMARK 465 SER A 257
REMARK 465 ILE A 258
REMARK 465 SER A 374
REMARK 465 ALA A 375
REMARK 465 TYR A 376
REMARK 465 ASN A 377
REMARK 465 PHE A 378
REMARK 465 LYS A 379
REMARK 465 LYS A 380
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 HIS A 68 CG ND1 CD2 CE1 NE2
REMARK 470 LYS A 97 CG CD CE NZ
REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 107 CG CD CE NZ
REMARK 470 LYS A 115 CG CD CE NZ
REMARK 470 MET A 150 CG SD CE
REMARK 470 THR A 187 OG1 CG2
REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 214 CG CD OE1 NE2
REMARK 470 GLU A 225 CG CD OE1 OE2
REMARK 470 LYS A 267 CG CD CE NZ
REMARK 470 LYS A 268 CG CD CE NZ
REMARK 470 LYS A 304 CG CD CE NZ
REMARK 470 LYS A 320 CG CD CE NZ
REMARK 470 GLU A 329 CG CD OE1 OE2
REMARK 470 LYS A 369 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PHE A 70 84.77 -67.44
REMARK 500 VAL A 92 73.76 -119.92
REMARK 500 ARG A 104 37.74 -88.60
REMARK 500 ASN A 244 -10.01 84.76
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1374
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4BJ5 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF RIF2 IN COMPLEX WITH THE C- TERMINAL DOMAIN OF
REMARK 900 RAP1 (RAP1-RCT)
REMARK 900 RELATED ID: 4BJ6 RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE RIF2 IN COMPLEX WITH THE C-TERMINAL DOMAIN OF
REMARK 900 RAP1 (RAP1-RCT)
REMARK 900 RELATED ID: 4BJS RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE RIF1 C-TERMINAL DOMAIN (RIF1 -CTD) FROM
REMARK 900 SACCHAROMYCES CEREVISIAE
REMARK 900 RELATED ID: 4BJT RELATED DB: PDB
REMARK 900 CRYSTAL STRUCTURE OF THE RAP1 C-TERMINAL DOMAIN (RAP1 -RCT) IN
REMARK 900 COMPLEX WITH THE RAP1 BINDING MODULE OF RIF1 (RIF1-RBM)
DBREF 4BJ1 A 65 380 UNP Q06208 RIF2_YEAST 65 380
SEQADV 4BJ1 GLY A 62 UNP Q06208 EXPRESSION TAG
SEQADV 4BJ1 GLY A 63 UNP Q06208 EXPRESSION TAG
SEQADV 4BJ1 GLY A 64 UNP Q06208 EXPRESSION TAG
SEQRES 1 A 319 GLY GLY GLY ARG VAL ASP HIS VAL PHE TYR GLN LYS PHE
SEQRES 2 A 319 LYS SER MET ALA LEU GLN GLU LEU GLY THR ASN TYR LEU
SEQRES 3 A 319 SER ILE SER TYR VAL PRO SER LEU SER LYS PHE LEU SER
SEQRES 4 A 319 LYS ASN LEU ARG SER MET LYS ASN CYS ILE VAL PHE PHE
SEQRES 5 A 319 ASP LYS VAL GLU HIS ILE HIS GLN TYR ALA GLY ILE ASP
SEQRES 6 A 319 ARG ALA VAL SER GLU THR LEU SER LEU VAL ASP ILE ASN
SEQRES 7 A 319 VAL VAL ILE ILE GLU MET ASN ASP TYR LEU MET LYS GLU
SEQRES 8 A 319 GLY ILE GLN SER SER LYS SER LYS GLU CYS ILE GLU SER
SEQRES 9 A 319 MET GLY GLN ALA SER TYR SER GLY GLN LEU ASP PHE GLU
SEQRES 10 A 319 ALA SER GLU LYS PRO SER ASN HIS THR SER ASP LEU MET
SEQRES 11 A 319 MET MET VAL MET ARG LYS ILE ASN ASN ASP GLU SER ILE
SEQRES 12 A 319 ASP HIS ILE VAL TYR PHE LYS PHE GLU GLN LEU ASP LYS
SEQRES 13 A 319 LEU SER THR SER THR ILE ILE GLU PRO SER LYS LEU THR
SEQRES 14 A 319 GLU PHE ILE ASN VAL LEU SER VAL LEU GLU LYS SER ASN
SEQRES 15 A 319 ASN ILE ALA PHE LYS VAL LEU ILE TYR SER ASN ASN VAL
SEQRES 16 A 319 SER ILE SER SER LEU LEU SER THR SER LEU LYS LYS LYS
SEQRES 17 A 319 LEU ASN THR LYS TYR THR VAL PHE GLU MET PRO ILE LEU
SEQRES 18 A 319 THR CYS ALA GLN GLU GLN GLU TYR LEU LYS LYS MET ILE
SEQRES 19 A 319 LYS PHE THR PHE ASP SER GLY SER LYS LEU LEU GLN SER
SEQRES 20 A 319 TYR ASN SER LEU VAL THR CYS GLN LEU ASN ASN LYS GLU
SEQRES 21 A 319 SER ASN LEU ALA ILE PHE PHE GLU PHE LEU LYS VAL PHE
SEQRES 22 A 319 PRO HIS PRO PHE THR TYR LEU PHE ASN ALA TYR THR GLU
SEQRES 23 A 319 ILE ILE VAL GLN SER ARG THR PHE ASP GLU LEU LEU ASP
SEQRES 24 A 319 LYS ILE ARG ASN ARG LEU THR ILE LYS ASN TYR PRO HIS
SEQRES 25 A 319 SER ALA TYR ASN PHE LYS LYS
HET CL A1374 1
HETNAM CL CHLORIDE ION
FORMUL 2 CL CL 1-
FORMUL 3 HOH *2(H2 O)
HELIX 1 1 PHE A 70 SER A 88 1 19
HELIX 2 2 VAL A 92 ARG A 104 1 13
HELIX 3 3 HIS A 118 VAL A 136 1 19
HELIX 4 4 MET A 145 MET A 150 1 6
HELIX 5 5 SER A 188 ASN A 199 1 12
HELIX 6 6 GLU A 225 SER A 242 1 18
HELIX 7 7 SER A 259 LEU A 270 1 12
HELIX 8 8 THR A 283 ILE A 295 1 13
HELIX 9 9 SER A 303 ASN A 319 1 17
HELIX 10 10 SER A 322 PHE A 334 1 13
HELIX 11 11 HIS A 336 SER A 352 1 17
HELIX 12 12 THR A 354 ARG A 365 1 12
SHEET 1 AA 5 ASN A 139 GLU A 144 0
SHEET 2 AA 5 HIS A 206 GLN A 214 1 O ILE A 207 N VAL A 141
SHEET 3 AA 5 ILE A 245 SER A 253 1 O ALA A 246 N VAL A 208
SHEET 4 AA 5 CYS A 109 ASP A 114 1 O CYS A 109 N VAL A 249
SHEET 5 AA 5 TYR A 274 GLU A 278 1 O THR A 275 N PHE A 112
CISPEP 1 TYR A 371 PRO A 372 0 -7.65
SITE 1 AC1 3 HIS A 120 HIS A 336 PHE A 338
CRYST1 78.360 78.360 236.210 90.00 90.00 120.00 P 65 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012762 0.007368 0.000000 0.00000
SCALE2 0.000000 0.014736 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004234 0.00000