HEADER DNA BINDING PROTEIN 15-APR-13 4BJ1 TITLE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE RIF2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN RIF2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 65-380; COMPND 5 SYNONYM: RAP1-INTERACTING FACTOR 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX BASED KEYWDS DNA BINDING PROTEIN, GENOME STABILITY, TELOMERE ASSOCIATED PROTEINS, KEYWDS 2 AAA+ FOLD EXPDTA X-RAY DIFFRACTION AUTHOR T.SHI,R.D.BUNKER,H.GUT,A.SCRIMA,N.H.THOMA REVDAT 2 08-MAY-24 4BJ1 1 REMARK REVDAT 1 19-JUN-13 4BJ1 0 JRNL AUTH T.SHI,R.D.BUNKER,S.MATTAROCCI,C.RIBEYRE,M.FATY,H.GUT, JRNL AUTH 2 A.SCRIMA,U.RASS,S.M.RUBIN,D.SHORE,N.H.THOMA JRNL TITL RIF1 AND RIF2 SHAPE TELOMERE FUNCATION AND ARCHITECTURE JRNL TITL 2 THROUGH MULTIVALENT RAP1 INTERACTIONS JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 1340 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23746845 JRNL DOI 10.1016/J.CELL.2013.05.007 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 9795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.610 REMARK 3 FREE R VALUE TEST SET COUNT : 452 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.29 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2694 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2216 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2579 REMARK 3 BIN R VALUE (WORKING SET) : 0.2186 REMARK 3 BIN FREE R VALUE : 0.2878 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.27 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 115 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2085 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 105.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.78200 REMARK 3 B22 (A**2) : -6.78200 REMARK 3 B33 (A**2) : 13.56400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.497 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.881 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.314 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.696 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.310 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2124 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2872 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 734 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 52 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 298 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2124 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 292 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2466 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.68 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.96 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|68 - 103 } REMARK 3 ORIGIN FOR THE GROUP (A): 29.7237 21.5197 19.2521 REMARK 3 T TENSOR REMARK 3 T11: 0.0504 T22: -0.0648 REMARK 3 T33: -0.1637 T12: -0.0204 REMARK 3 T13: -0.0962 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.6528 L22: 2.5719 REMARK 3 L33: 7.3817 L12: -2.3188 REMARK 3 L13: -2.1092 L23: 0.3493 REMARK 3 S TENSOR REMARK 3 S11: -0.0623 S12: 0.3147 S13: -0.4855 REMARK 3 S21: -0.2255 S22: -0.1251 S23: 0.0221 REMARK 3 S31: -0.4326 S32: -0.5930 S33: 0.1874 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|104 - 205 } REMARK 3 ORIGIN FOR THE GROUP (A): 24.7774 25.4190 40.8156 REMARK 3 T TENSOR REMARK 3 T11: -0.1603 T22: -0.0111 REMARK 3 T33: -0.1154 T12: 0.0608 REMARK 3 T13: 0.1505 T23: 0.1173 REMARK 3 L TENSOR REMARK 3 L11: 2.2323 L22: 12.0966 REMARK 3 L33: 6.8865 L12: -4.7475 REMARK 3 L13: -2.7613 L23: 5.1271 REMARK 3 S TENSOR REMARK 3 S11: -0.3793 S12: -0.3744 S13: 0.0117 REMARK 3 S21: -0.2658 S22: 0.6888 S23: 0.2206 REMARK 3 S31: -0.4164 S32: 0.3591 S33: -0.3094 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|206 - 269 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.2847 20.0878 47.9521 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: 0.0965 REMARK 3 T33: -0.1060 T12: 0.2064 REMARK 3 T13: 0.2687 T23: 0.1426 REMARK 3 L TENSOR REMARK 3 L11: 2.8888 L22: 9.0407 REMARK 3 L33: 5.3811 L12: -1.4138 REMARK 3 L13: -3.4488 L23: 2.4345 REMARK 3 S TENSOR REMARK 3 S11: -0.4597 S12: -0.6268 S13: -0.4130 REMARK 3 S21: 0.9064 S22: 0.1196 S23: 0.7879 REMARK 3 S31: 0.7637 S32: 0.1447 S33: 0.3400 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|270 - 373 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.8750 10.4262 15.4224 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: -0.2276 REMARK 3 T33: -0.1413 T12: -0.0520 REMARK 3 T13: -0.0557 T23: 0.0665 REMARK 3 L TENSOR REMARK 3 L11: 3.9107 L22: 2.4201 REMARK 3 L33: 4.0338 L12: -0.3907 REMARK 3 L13: -2.2393 L23: 0.4329 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: 0.1863 S13: -0.7111 REMARK 3 S21: -0.4010 S22: -0.1766 S23: 0.3427 REMARK 3 S31: 0.6716 S32: -0.0957 S33: 0.2149 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4BJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9796 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.940 REMARK 200 RESOLUTION RANGE LOW (A) : 44.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-20% 1,4-BUTANEDIOL, 100 MM NA REMARK 280 ACETATE PH 5.1 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 157.47333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.73667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.10500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.36833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 196.84167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 157.47333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 78.73667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 39.36833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 118.10500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 196.84167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 39.18000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 67.86175 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.36833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 62 REMARK 465 GLY A 63 REMARK 465 GLY A 64 REMARK 465 ARG A 65 REMARK 465 VAL A 66 REMARK 465 ASP A 67 REMARK 465 GLU A 152 REMARK 465 GLY A 153 REMARK 465 ILE A 154 REMARK 465 GLN A 155 REMARK 465 SER A 156 REMARK 465 SER A 157 REMARK 465 LYS A 158 REMARK 465 SER A 159 REMARK 465 LYS A 160 REMARK 465 GLU A 161 REMARK 465 CYS A 162 REMARK 465 ILE A 163 REMARK 465 GLU A 164 REMARK 465 SER A 165 REMARK 465 MET A 166 REMARK 465 GLY A 167 REMARK 465 GLN A 168 REMARK 465 ALA A 169 REMARK 465 SER A 170 REMARK 465 TYR A 171 REMARK 465 SER A 172 REMARK 465 GLY A 173 REMARK 465 GLN A 174 REMARK 465 LEU A 175 REMARK 465 ASP A 176 REMARK 465 PHE A 177 REMARK 465 GLU A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 GLU A 181 REMARK 465 LYS A 182 REMARK 465 PRO A 183 REMARK 465 SER A 184 REMARK 465 ASN A 185 REMARK 465 HIS A 186 REMARK 465 LEU A 218 REMARK 465 SER A 219 REMARK 465 THR A 220 REMARK 465 SER A 221 REMARK 465 THR A 222 REMARK 465 ILE A 223 REMARK 465 ASN A 255 REMARK 465 VAL A 256 REMARK 465 SER A 257 REMARK 465 ILE A 258 REMARK 465 SER A 374 REMARK 465 ALA A 375 REMARK 465 TYR A 376 REMARK 465 ASN A 377 REMARK 465 PHE A 378 REMARK 465 LYS A 379 REMARK 465 LYS A 380 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 68 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 MET A 150 CG SD CE REMARK 470 THR A 187 OG1 CG2 REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 214 CG CD OE1 NE2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 LYS A 369 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 70 84.77 -67.44 REMARK 500 VAL A 92 73.76 -119.92 REMARK 500 ARG A 104 37.74 -88.60 REMARK 500 ASN A 244 -10.01 84.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1374 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BJ5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIF2 IN COMPLEX WITH THE C- TERMINAL DOMAIN OF REMARK 900 RAP1 (RAP1-RCT) REMARK 900 RELATED ID: 4BJ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE RIF2 IN COMPLEX WITH THE C-TERMINAL DOMAIN OF REMARK 900 RAP1 (RAP1-RCT) REMARK 900 RELATED ID: 4BJS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIF1 C-TERMINAL DOMAIN (RIF1 -CTD) FROM REMARK 900 SACCHAROMYCES CEREVISIAE REMARK 900 RELATED ID: 4BJT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RAP1 C-TERMINAL DOMAIN (RAP1 -RCT) IN REMARK 900 COMPLEX WITH THE RAP1 BINDING MODULE OF RIF1 (RIF1-RBM) DBREF 4BJ1 A 65 380 UNP Q06208 RIF2_YEAST 65 380 SEQADV 4BJ1 GLY A 62 UNP Q06208 EXPRESSION TAG SEQADV 4BJ1 GLY A 63 UNP Q06208 EXPRESSION TAG SEQADV 4BJ1 GLY A 64 UNP Q06208 EXPRESSION TAG SEQRES 1 A 319 GLY GLY GLY ARG VAL ASP HIS VAL PHE TYR GLN LYS PHE SEQRES 2 A 319 LYS SER MET ALA LEU GLN GLU LEU GLY THR ASN TYR LEU SEQRES 3 A 319 SER ILE SER TYR VAL PRO SER LEU SER LYS PHE LEU SER SEQRES 4 A 319 LYS ASN LEU ARG SER MET LYS ASN CYS ILE VAL PHE PHE SEQRES 5 A 319 ASP LYS VAL GLU HIS ILE HIS GLN TYR ALA GLY ILE ASP SEQRES 6 A 319 ARG ALA VAL SER GLU THR LEU SER LEU VAL ASP ILE ASN SEQRES 7 A 319 VAL VAL ILE ILE GLU MET ASN ASP TYR LEU MET LYS GLU SEQRES 8 A 319 GLY ILE GLN SER SER LYS SER LYS GLU CYS ILE GLU SER SEQRES 9 A 319 MET GLY GLN ALA SER TYR SER GLY GLN LEU ASP PHE GLU SEQRES 10 A 319 ALA SER GLU LYS PRO SER ASN HIS THR SER ASP LEU MET SEQRES 11 A 319 MET MET VAL MET ARG LYS ILE ASN ASN ASP GLU SER ILE SEQRES 12 A 319 ASP HIS ILE VAL TYR PHE LYS PHE GLU GLN LEU ASP LYS SEQRES 13 A 319 LEU SER THR SER THR ILE ILE GLU PRO SER LYS LEU THR SEQRES 14 A 319 GLU PHE ILE ASN VAL LEU SER VAL LEU GLU LYS SER ASN SEQRES 15 A 319 ASN ILE ALA PHE LYS VAL LEU ILE TYR SER ASN ASN VAL SEQRES 16 A 319 SER ILE SER SER LEU LEU SER THR SER LEU LYS LYS LYS SEQRES 17 A 319 LEU ASN THR LYS TYR THR VAL PHE GLU MET PRO ILE LEU SEQRES 18 A 319 THR CYS ALA GLN GLU GLN GLU TYR LEU LYS LYS MET ILE SEQRES 19 A 319 LYS PHE THR PHE ASP SER GLY SER LYS LEU LEU GLN SER SEQRES 20 A 319 TYR ASN SER LEU VAL THR CYS GLN LEU ASN ASN LYS GLU SEQRES 21 A 319 SER ASN LEU ALA ILE PHE PHE GLU PHE LEU LYS VAL PHE SEQRES 22 A 319 PRO HIS PRO PHE THR TYR LEU PHE ASN ALA TYR THR GLU SEQRES 23 A 319 ILE ILE VAL GLN SER ARG THR PHE ASP GLU LEU LEU ASP SEQRES 24 A 319 LYS ILE ARG ASN ARG LEU THR ILE LYS ASN TYR PRO HIS SEQRES 25 A 319 SER ALA TYR ASN PHE LYS LYS HET CL A1374 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- FORMUL 3 HOH *2(H2 O) HELIX 1 1 PHE A 70 SER A 88 1 19 HELIX 2 2 VAL A 92 ARG A 104 1 13 HELIX 3 3 HIS A 118 VAL A 136 1 19 HELIX 4 4 MET A 145 MET A 150 1 6 HELIX 5 5 SER A 188 ASN A 199 1 12 HELIX 6 6 GLU A 225 SER A 242 1 18 HELIX 7 7 SER A 259 LEU A 270 1 12 HELIX 8 8 THR A 283 ILE A 295 1 13 HELIX 9 9 SER A 303 ASN A 319 1 17 HELIX 10 10 SER A 322 PHE A 334 1 13 HELIX 11 11 HIS A 336 SER A 352 1 17 HELIX 12 12 THR A 354 ARG A 365 1 12 SHEET 1 AA 5 ASN A 139 GLU A 144 0 SHEET 2 AA 5 HIS A 206 GLN A 214 1 O ILE A 207 N VAL A 141 SHEET 3 AA 5 ILE A 245 SER A 253 1 O ALA A 246 N VAL A 208 SHEET 4 AA 5 CYS A 109 ASP A 114 1 O CYS A 109 N VAL A 249 SHEET 5 AA 5 TYR A 274 GLU A 278 1 O THR A 275 N PHE A 112 CISPEP 1 TYR A 371 PRO A 372 0 -7.65 SITE 1 AC1 3 HIS A 120 HIS A 336 PHE A 338 CRYST1 78.360 78.360 236.210 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012762 0.007368 0.000000 0.00000 SCALE2 0.000000 0.014736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004234 0.00000