HEADER HYDROLASE 16-APR-13 4BJ4 TITLE STRUCTURE OF PSEUDOMONAS AERUGINOSA AMIDASE AMPDH2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMPDH2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 18-259; COMPND 5 SYNONYM: N-ACETYLMURAMOYL-L-ALANINE AMIDASE; COMPND 6 EC: 3.5.1.28; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 ATCC: 27853; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE, PERIPLASMIC AMIDASE EXPDTA X-RAY DIFFRACTION AUTHOR C.S.MARTINEZ-CABALLERO,C.CARRASCO-LOPEZ,C.ARTOLA-RECOLONS,J.A.HERMOSO REVDAT 3 20-DEC-23 4BJ4 1 REMARK REVDAT 2 31-JUL-13 4BJ4 1 JRNL REVDAT 1 24-JUL-13 4BJ4 0 JRNL AUTH S.MARTINEZ-CABALLERO,M.LEE,C.ARTOLA-RECOLONS, JRNL AUTH 2 C.CARRASCO-LOPEZ,D.HESEK,E.E.SPINK,E.LASTOCHKIN,W.ZHANG, JRNL AUTH 3 L.M.HELLMAN,B.BOGGESS,S.MOBASHERY,J.A.HERMOSO JRNL TITL REACTION PRODUCTS AND THE X-RAY STRUCTURE OF AMPDH2, A JRNL TITL 2 VIRULENCE DETERMINANT OF PSEUDOMONAS AERUGINOSA. JRNL REF J.AM.CHEM.SOC. V. 135 10318 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23819763 JRNL DOI 10.1021/JA405464B REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 54680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2841 - 4.6722 1.00 2801 171 0.1672 0.1686 REMARK 3 2 4.6722 - 3.7089 1.00 2665 147 0.1253 0.1510 REMARK 3 3 3.7089 - 3.2402 1.00 2684 114 0.1462 0.1589 REMARK 3 4 3.2402 - 2.9440 1.00 2645 141 0.1541 0.1647 REMARK 3 5 2.9440 - 2.7330 1.00 2606 148 0.1748 0.1998 REMARK 3 6 2.7330 - 2.5719 1.00 2630 117 0.1741 0.1949 REMARK 3 7 2.5719 - 2.4431 1.00 2600 148 0.1755 0.2141 REMARK 3 8 2.4431 - 2.3368 1.00 2585 150 0.1685 0.1975 REMARK 3 9 2.3368 - 2.2468 0.99 2590 138 0.1817 0.2528 REMARK 3 10 2.2468 - 2.1693 1.00 2606 144 0.1741 0.1916 REMARK 3 11 2.1693 - 2.1015 1.00 2573 130 0.1757 0.2117 REMARK 3 12 2.1015 - 2.0414 0.99 2543 139 0.1825 0.2658 REMARK 3 13 2.0414 - 1.9877 1.00 2619 136 0.1718 0.2208 REMARK 3 14 1.9877 - 1.9392 0.99 2561 132 0.1829 0.1911 REMARK 3 15 1.9392 - 1.8951 0.99 2559 122 0.1988 0.2296 REMARK 3 16 1.8951 - 1.8547 0.99 2548 145 0.1945 0.2625 REMARK 3 17 1.8547 - 1.8176 1.00 2577 147 0.2067 0.2709 REMARK 3 18 1.8176 - 1.7833 1.00 2568 142 0.2360 0.2654 REMARK 3 19 1.7833 - 1.7515 1.00 2569 128 0.2708 0.3046 REMARK 3 20 1.7515 - 1.7218 0.92 2369 143 0.3032 0.3634 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4043 REMARK 3 ANGLE : 1.144 5526 REMARK 3 CHIRALITY : 0.079 589 REMARK 3 PLANARITY : 0.006 732 REMARK 3 DIHEDRAL : 11.883 1508 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54928 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 48.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2WKX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM THIOCYANATE, 0.1 M BIS REMARK 280 -TRIS PROPANE PH 7.5, 18 % PEG 3350, PH 5.1 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.37950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.13000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.21050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.13000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.37950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.21050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 189 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2327 O HOH B 2329 1.82 REMARK 500 O HOH B 2083 O HOH B 2212 1.83 REMARK 500 OE1 GLU B 193 O HOH B 2296 1.87 REMARK 500 O HOH A 2359 O HOH A 2360 1.88 REMARK 500 OD2 ASP B 224 O HOH B 2341 1.92 REMARK 500 O HOH A 2073 O HOH A 2308 1.95 REMARK 500 O HOH B 2101 O HOH B 2103 1.99 REMARK 500 O HOH A 2279 O HOH B 2196 2.01 REMARK 500 O HOH A 2085 O HOH A 2182 2.03 REMARK 500 O HOH B 2046 O HOH B 2109 2.08 REMARK 500 O HOH B 2056 O HOH B 2144 2.10 REMARK 500 O HOH A 2343 O HOH A 2344 2.13 REMARK 500 O HOH A 2447 O HOH A 2448 2.13 REMARK 500 NZ LYS B 223 O HOH B 2243 2.14 REMARK 500 O HOH A 2271 O HOH B 2194 2.15 REMARK 500 OE1 GLN B 206 O HOH B 2312 2.16 REMARK 500 O HOH A 2139 O HOH A 2168 2.16 REMARK 500 O HOH A 2335 O HOH A 2337 2.17 REMARK 500 O HOH A 2279 O HOH A 2282 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2371 O HOH B 2078 2555 1.94 REMARK 500 O HOH A 2401 O HOH A 2448 4555 2.00 REMARK 500 O HOH A 2252 O HOH B 2114 3554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 -101.96 44.87 REMARK 500 ASP A 33 -159.30 -158.07 REMARK 500 ALA B 15 19.77 -169.46 REMARK 500 ASP B 33 -159.20 -157.79 REMARK 500 ARG B 237 59.75 -147.07 REMARK 500 PRO B 238 0.93 -69.26 REMARK 500 PHE B 241 56.79 -119.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2060 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2101 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2110 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A2111 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A2116 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A2117 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A2128 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A2153 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A2198 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A2207 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A2208 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A2213 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A2222 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2248 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A2410 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B2016 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B2054 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B2064 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B2066 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH B2070 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B2184 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B2190 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B2369 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B2370 DISTANCE = 6.27 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 1260 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BOL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AMPDH2 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX REMARK 900 WITH PENTAPEPTIDE REMARK 900 RELATED ID: 4BPA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AMPDH2 FROM PSEUDOMONAS AERUGINOSA IN COMPLEX REMARK 900 WITH NAG-NAM-NAG-NAM TETRASACCHARIDE DBREF 4BJ4 A 18 259 UNP Q9HT86 Q9HT86_PSEAE 18 259 DBREF 4BJ4 B 18 259 UNP Q9HT86 Q9HT86_PSEAE 18 259 SEQADV 4BJ4 GLY A 14 UNP Q9HT86 EXPRESSION TAG SEQADV 4BJ4 ALA A 15 UNP Q9HT86 EXPRESSION TAG SEQADV 4BJ4 PHE A 16 UNP Q9HT86 EXPRESSION TAG SEQADV 4BJ4 MET A 17 UNP Q9HT86 EXPRESSION TAG SEQADV 4BJ4 GLY B 14 UNP Q9HT86 EXPRESSION TAG SEQADV 4BJ4 ALA B 15 UNP Q9HT86 EXPRESSION TAG SEQADV 4BJ4 PHE B 16 UNP Q9HT86 EXPRESSION TAG SEQADV 4BJ4 MET B 17 UNP Q9HT86 EXPRESSION TAG SEQRES 1 A 246 GLY ALA PHE MET SER SER GLY PRO ARG LEU ASN THR ASP SEQRES 2 A 246 TYR THR SER ALA ASN GLN ASP SER ARG VAL GLN PHE ILE SEQRES 3 A 246 VAL LEU HIS TYR THR SER THR ASP LEU PRO HIS SER LEU SEQRES 4 A 246 GLY ILE LEU THR HIS GLY GLY VAL SER ALA HIS TYR LEU SEQRES 5 A 246 ILE GLY ASP ASP GLU PRO ALA THR VAL TYR ARG LEU VAL SEQRES 6 A 246 ASP GLU ASN ARG ARG ALA TRP HIS ALA GLY VAL SER GLU SEQRES 7 A 246 TRP GLN GLY ARG THR TRP LEU ASN ALA THR SER ILE GLY SEQRES 8 A 246 ILE GLU ILE VAL ASN GLN GLY TYR ARG ASP THR PRO GLN SEQRES 9 A 246 GLY ARG VAL TRP TYR PRO PHE SER GLU ALA GLN ILE GLN SEQRES 10 A 246 ALA LEU ILE PRO LEU LEU LYS ASP ILE ALA LYS ARG HIS SEQRES 11 A 246 GLY ILE THR PRO ASP ARG ILE ILE GLY HIS SER ASP ILE SEQRES 12 A 246 ALA PRO GLY ARG LYS VAL ASP PRO GLY PRO LEU PHE PRO SEQRES 13 A 246 TRP LYS ARG LEU ALA ASP ALA GLY LEU VAL PRO TRP PRO SEQRES 14 A 246 LYS PRO GLY GLU LEU ALA ARG ARG LEU ALA GLU LEU ASN SEQRES 15 A 246 GLY GLN LEU PRO ASP VAL ARG TRP PHE GLN GLN GLN LEU SEQRES 16 A 246 ALA ARG HIS GLY TYR LEU VAL PRO GLN THR GLY GLU LEU SEQRES 17 A 246 GLU LYS ASP THR ARG ASP VAL ILE GLY ALA PHE GLN MET SEQRES 18 A 246 LYS TYR ARG PRO ALA ARG PHE ASP GLY GLU PRO ASP LEU SEQRES 19 A 246 GLU THR ALA ALA LEU LEU LEU ALA VAL PRO THR SER SEQRES 1 B 246 GLY ALA PHE MET SER SER GLY PRO ARG LEU ASN THR ASP SEQRES 2 B 246 TYR THR SER ALA ASN GLN ASP SER ARG VAL GLN PHE ILE SEQRES 3 B 246 VAL LEU HIS TYR THR SER THR ASP LEU PRO HIS SER LEU SEQRES 4 B 246 GLY ILE LEU THR HIS GLY GLY VAL SER ALA HIS TYR LEU SEQRES 5 B 246 ILE GLY ASP ASP GLU PRO ALA THR VAL TYR ARG LEU VAL SEQRES 6 B 246 ASP GLU ASN ARG ARG ALA TRP HIS ALA GLY VAL SER GLU SEQRES 7 B 246 TRP GLN GLY ARG THR TRP LEU ASN ALA THR SER ILE GLY SEQRES 8 B 246 ILE GLU ILE VAL ASN GLN GLY TYR ARG ASP THR PRO GLN SEQRES 9 B 246 GLY ARG VAL TRP TYR PRO PHE SER GLU ALA GLN ILE GLN SEQRES 10 B 246 ALA LEU ILE PRO LEU LEU LYS ASP ILE ALA LYS ARG HIS SEQRES 11 B 246 GLY ILE THR PRO ASP ARG ILE ILE GLY HIS SER ASP ILE SEQRES 12 B 246 ALA PRO GLY ARG LYS VAL ASP PRO GLY PRO LEU PHE PRO SEQRES 13 B 246 TRP LYS ARG LEU ALA ASP ALA GLY LEU VAL PRO TRP PRO SEQRES 14 B 246 LYS PRO GLY GLU LEU ALA ARG ARG LEU ALA GLU LEU ASN SEQRES 15 B 246 GLY GLN LEU PRO ASP VAL ARG TRP PHE GLN GLN GLN LEU SEQRES 16 B 246 ALA ARG HIS GLY TYR LEU VAL PRO GLN THR GLY GLU LEU SEQRES 17 B 246 GLU LYS ASP THR ARG ASP VAL ILE GLY ALA PHE GLN MET SEQRES 18 B 246 LYS TYR ARG PRO ALA ARG PHE ASP GLY GLU PRO ASP LEU SEQRES 19 B 246 GLU THR ALA ALA LEU LEU LEU ALA VAL PRO THR SER HET FLC A1260 13 HETNAM FLC CITRATE ANION FORMUL 3 FLC C6 H5 O7 3- FORMUL 4 HOH *871(H2 O) HELIX 1 1 ASP A 47 HIS A 57 1 11 HELIX 2 2 LEU A 98 ALA A 100 5 3 HELIX 3 3 SER A 125 GLY A 144 1 20 HELIX 4 4 THR A 146 ASP A 148 5 3 HELIX 5 5 HIS A 153 ALA A 157 1 5 HELIX 6 6 PRO A 169 ALA A 176 1 8 HELIX 7 7 GLY A 185 ASN A 195 1 11 HELIX 8 8 ASP A 200 GLY A 212 1 13 HELIX 9 9 GLU A 222 ARG A 237 1 16 HELIX 10 10 ASP A 246 VAL A 256 1 11 HELIX 11 11 ASP B 47 GLY B 58 1 12 HELIX 12 12 LEU B 98 ALA B 100 5 3 HELIX 13 13 SER B 125 GLY B 144 1 20 HELIX 14 14 THR B 146 ASP B 148 5 3 HELIX 15 15 HIS B 153 ALA B 157 1 5 HELIX 16 16 PRO B 169 ALA B 176 1 8 HELIX 17 17 GLY B 185 ASN B 195 1 11 HELIX 18 18 ASP B 200 GLY B 212 1 13 HELIX 19 19 GLU B 222 ARG B 237 1 16 HELIX 20 20 ASP B 246 VAL B 256 1 11 SHEET 1 AA 2 GLN A 32 SER A 34 0 SHEET 2 AA 2 ARG B 82 ALA B 84 -1 O ARG B 83 N ASP A 33 SHEET 1 AB 5 VAL A 74 ARG A 76 0 SHEET 2 AB 5 TYR A 64 ILE A 66 -1 O LEU A 65 N TYR A 75 SHEET 3 AB 5 SER A 102 ILE A 107 1 O GLY A 104 N TYR A 64 SHEET 4 AB 5 PHE A 38 TYR A 43 1 O PHE A 38 N ILE A 103 SHEET 5 AB 5 ILE A 150 GLY A 152 1 O ILE A 151 N LEU A 41 SHEET 1 AC 2 ARG A 83 ALA A 84 0 SHEET 2 AC 2 GLN B 32 ASP B 33 -1 O ASP B 33 N ARG A 83 SHEET 1 AD 2 GLU A 91 TRP A 92 0 SHEET 2 AD 2 ARG A 95 THR A 96 -1 O ARG A 95 N TRP A 92 SHEET 1 AE 2 TYR A 112 ARG A 113 0 SHEET 2 AE 2 VAL A 120 TRP A 121 -1 O VAL A 120 N ARG A 113 SHEET 1 BA 5 VAL B 74 ARG B 76 0 SHEET 2 BA 5 TYR B 64 ILE B 66 -1 O LEU B 65 N TYR B 75 SHEET 3 BA 5 SER B 102 ILE B 107 1 O GLY B 104 N TYR B 64 SHEET 4 BA 5 PHE B 38 TYR B 43 1 O PHE B 38 N ILE B 103 SHEET 5 BA 5 ILE B 150 GLY B 152 1 O ILE B 151 N LEU B 41 SHEET 1 BB 2 GLU B 91 TRP B 92 0 SHEET 2 BB 2 ARG B 95 THR B 96 -1 O ARG B 95 N TRP B 92 SHEET 1 BC 2 TYR B 112 THR B 115 0 SHEET 2 BC 2 GLY B 118 TRP B 121 -1 O GLY B 118 N THR B 115 CISPEP 1 GLY A 14 ALA A 15 0 -4.51 CISPEP 2 GLU A 70 PRO A 71 0 -2.11 CISPEP 3 ASP A 163 PRO A 164 0 6.61 CISPEP 4 GLU B 70 PRO B 71 0 -8.51 CISPEP 5 ASP B 163 PRO B 164 0 7.24 SITE 1 AC1 15 ARG A 83 GLY A 88 TRP A 97 ASN A 99 SITE 2 AC1 15 HOH A2232 HOH A2233 HOH A2240 HOH A2250 SITE 3 AC1 15 HOH A2495 HOH A2496 HOH A2497 HOH A2498 SITE 4 AC1 15 HOH A2499 HOH A2500 ARG B 95 CRYST1 48.759 100.421 104.260 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020509 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009591 0.00000