HEADER TRANSFERASE 19-APR-13 4BJQ TITLE CRYSTAL STRUCTURE OF E. COLI PENICILLIN BINDING PROTEIN 3, TITLE 2 DOMAIN V88-S165 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN BINDING PROTEIN TRANSPEPTIDASE DOMAIN PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: RESIDUES 88-165; COMPND 5 EC: 2.4.1.129; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSPEPTIDASE EXPDTA X-RAY DIFFRACTION AUTHOR E.SAUVAGE,M.JORIS,R.HERMAN,F.KERFF,M.ROCABOY,P.CHARLIER REVDAT 2 11-JUN-14 4BJQ 1 JRNL REVDAT 1 07-MAY-14 4BJQ 0 JRNL AUTH E.SAUVAGE,A.DEROUAUX,C.FRAIPONT,M.JORIS,R.HERMAN,M.ROCABOY, JRNL AUTH 2 M.SCHLOESSER,J.DUMAS,F.KERFF,M.NGUYEN-DISTECHE,P.CHARLIER JRNL TITL CRYSTAL STRUCTURE OF PENICILLIN-BINDING PROTEIN 3 (PBP3) JRNL TITL 2 FROM ESCHERICHIA COLI. JRNL REF PLOS ONE V. 9 98042 2014 JRNL REFN ISSN 1932-6203 JRNL PMID 24875494 JRNL DOI 10.1371/JOURNAL.PONE.0098042 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 88.41 REMARK 3 NUMBER OF REFLECTIONS : 43316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.21099 REMARK 3 R VALUE (WORKING SET) : 0.20823 REMARK 3 FREE R VALUE : 0.26252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2309 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.100 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.154 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3462 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.307 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.408 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 533 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.944 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01 REMARK 3 B22 (A**2) : 0.03 REMARK 3 B33 (A**2) : -0.02 REMARK 3 B12 (A**2) : -0.01 REMARK 3 B13 (A**2) : 0.03 REMARK 3 B23 (A**2) : -0.01 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.234 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.115 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5029 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6809 ; 1.195 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 613 ; 5.283 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;32.156 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 885 ;17.062 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;22.569 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 733 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3764 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3101 ; 0.525 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4958 ; 1.014 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1928 ; 1.614 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1851 ; 2.714 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 56.0660 40.9850 100.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.0860 T22: 0.0755 REMARK 3 T33: 0.0232 T12: 0.0105 REMARK 3 T13: 0.0118 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.7194 L22: 0.9689 REMARK 3 L33: 0.0997 L12: -0.3240 REMARK 3 L13: 0.0014 L23: -0.2785 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0212 S13: 0.0478 REMARK 3 S21: -0.0072 S22: 0.0163 S23: 0.0204 REMARK 3 S31: 0.0166 S32: 0.0091 S33: -0.0187 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 88 B 165 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3620 -18.9410 51.3770 REMARK 3 T TENSOR REMARK 3 T11: 0.0637 T22: 0.0979 REMARK 3 T33: 0.0361 T12: 0.0167 REMARK 3 T13: 0.0214 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.7024 L22: 1.0675 REMARK 3 L33: 0.2248 L12: -0.4791 REMARK 3 L13: -0.2969 L23: 0.3076 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.0098 S13: 0.0199 REMARK 3 S21: 0.0171 S22: 0.0131 S23: 0.0515 REMARK 3 S31: 0.0315 S32: 0.0089 S33: -0.0296 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 88 C 165 REMARK 3 ORIGIN FOR THE GROUP (A): 65.9870 28.8880 108.6570 REMARK 3 T TENSOR REMARK 3 T11: 0.0858 T22: 0.0575 REMARK 3 T33: 0.0501 T12: 0.0106 REMARK 3 T13: 0.0092 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.2049 L22: 0.6367 REMARK 3 L33: 0.4935 L12: -0.6208 REMARK 3 L13: 0.3472 L23: -0.5193 REMARK 3 S TENSOR REMARK 3 S11: -0.0533 S12: -0.1311 S13: -0.0716 REMARK 3 S21: -0.0618 S22: 0.0365 S23: 0.0348 REMARK 3 S31: 0.0643 S32: -0.0077 S33: 0.0167 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 88 D 200 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7580 18.2370 95.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.0620 T22: 0.0683 REMARK 3 T33: 0.0394 T12: -0.0172 REMARK 3 T13: 0.0307 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 0.8003 L22: 0.4759 REMARK 3 L33: 0.3821 L12: 0.2808 REMARK 3 L13: -0.1029 L23: 0.0911 REMARK 3 S TENSOR REMARK 3 S11: -0.0850 S12: 0.0296 S13: -0.0656 REMARK 3 S21: 0.0104 S22: 0.0340 S23: 0.0424 REMARK 3 S31: -0.0465 S32: 0.0036 S33: 0.0509 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 88 E 164 REMARK 3 ORIGIN FOR THE GROUP (A): 51.4220 -33.3060 42.9450 REMARK 3 T TENSOR REMARK 3 T11: 0.0601 T22: 0.1001 REMARK 3 T33: 0.0376 T12: 0.0223 REMARK 3 T13: 0.0250 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.2508 L22: 1.5049 REMARK 3 L33: 0.5802 L12: -0.0249 REMARK 3 L13: -0.1855 L23: 0.7240 REMARK 3 S TENSOR REMARK 3 S11: -0.0408 S12: -0.0241 S13: -0.0217 REMARK 3 S21: -0.1106 S22: 0.0121 S23: -0.0794 REMARK 3 S31: -0.0341 S32: 0.0016 S33: 0.0288 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 88 F 165 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7520 -4.8930 55.6080 REMARK 3 T TENSOR REMARK 3 T11: 0.0430 T22: 0.0939 REMARK 3 T33: 0.0476 T12: -0.0011 REMARK 3 T13: 0.0230 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.8540 L22: 0.3355 REMARK 3 L33: 0.8565 L12: 0.3914 REMARK 3 L13: -0.4015 L23: -0.2780 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: -0.0087 S13: -0.0277 REMARK 3 S21: 0.0026 S22: -0.0446 S23: -0.0820 REMARK 3 S31: -0.0032 S32: -0.0473 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 88 G 164 REMARK 3 ORIGIN FOR THE GROUP (A): 61.7420 -10.8810 65.8230 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.0964 REMARK 3 T33: 0.0211 T12: -0.0321 REMARK 3 T13: -0.0017 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.4798 L22: 0.7053 REMARK 3 L33: 0.3284 L12: 0.7131 REMARK 3 L13: -0.4905 L23: -0.0357 REMARK 3 S TENSOR REMARK 3 S11: 0.1267 S12: -0.0614 S13: -0.1209 REMARK 3 S21: 0.0641 S22: -0.1181 S23: -0.0070 REMARK 3 S31: 0.0250 S32: -0.0715 S33: -0.0086 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 88 H 164 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8160 28.5780 86.0090 REMARK 3 T TENSOR REMARK 3 T11: 0.0656 T22: 0.0885 REMARK 3 T33: 0.0502 T12: -0.0571 REMARK 3 T13: 0.0188 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.0825 L22: 2.5549 REMARK 3 L33: 0.6096 L12: 1.1134 REMARK 3 L13: -0.5738 L23: -0.9541 REMARK 3 S TENSOR REMARK 3 S11: -0.1777 S12: 0.1125 S13: -0.0729 REMARK 3 S21: -0.1415 S22: 0.1635 S23: -0.2469 REMARK 3 S31: 0.0405 S32: -0.0291 S33: 0.0142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4BJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-13. REMARK 100 THE PDBE ID CODE IS EBI-56581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45669 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.10 REMARK 200 RESOLUTION RANGE LOW (A) : 38.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : 3.7 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.8 REMARK 200 R MERGE FOR SHELL (I) : 0.51 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -56.04800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 56.04800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER E 165 REMARK 465 SER G 165 REMARK 465 SER H 165 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG G 135 O TYR H 138 2645 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN F 131 64.04 64.00 REMARK 500 ALA G 130 -73.75 -51.94 REMARK 500 PHE H 136 117.78 -160.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS D1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E1165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D1167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E1166 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BJP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E. COLI PENICILLIN BINDING PROTEIN REMARK 900 3 DBREF 4BJQ A 88 165 UNP J2XFH0 J2XFH0_ECOLX 88 165 DBREF 4BJQ B 88 165 UNP J2XFH0 J2XFH0_ECOLX 88 165 DBREF 4BJQ C 88 165 UNP J2XFH0 J2XFH0_ECOLX 88 165 DBREF 4BJQ D 88 165 UNP J2XFH0 J2XFH0_ECOLX 88 165 DBREF 4BJQ E 88 165 UNP J2XFH0 J2XFH0_ECOLX 88 165 DBREF 4BJQ F 88 165 UNP J2XFH0 J2XFH0_ECOLX 88 165 DBREF 4BJQ G 88 165 UNP J2XFH0 J2XFH0_ECOLX 88 165 DBREF 4BJQ H 88 165 UNP J2XFH0 J2XFH0_ECOLX 88 165 SEQRES 1 A 78 VAL LYS ALA ILE TRP ALA ASP PRO LYS GLU VAL HIS ASP SEQRES 2 A 78 ALA GLY GLY ILE SER VAL GLY ASP ARG TRP LYS ALA LEU SEQRES 3 A 78 ALA ASN ALA LEU ASN ILE PRO LEU ASP GLN LEU SER ALA SEQRES 4 A 78 ARG ILE ASN ALA ASN PRO LYS GLY ARG PHE ILE TYR LEU SEQRES 5 A 78 ALA ARG GLN VAL ASN PRO ASP MET ALA ASP TYR ILE LYS SEQRES 6 A 78 LYS LEU LYS LEU PRO GLY ILE HIS LEU ARG GLU GLU SER SEQRES 1 B 78 VAL LYS ALA ILE TRP ALA ASP PRO LYS GLU VAL HIS ASP SEQRES 2 B 78 ALA GLY GLY ILE SER VAL GLY ASP ARG TRP LYS ALA LEU SEQRES 3 B 78 ALA ASN ALA LEU ASN ILE PRO LEU ASP GLN LEU SER ALA SEQRES 4 B 78 ARG ILE ASN ALA ASN PRO LYS GLY ARG PHE ILE TYR LEU SEQRES 5 B 78 ALA ARG GLN VAL ASN PRO ASP MET ALA ASP TYR ILE LYS SEQRES 6 B 78 LYS LEU LYS LEU PRO GLY ILE HIS LEU ARG GLU GLU SER SEQRES 1 C 78 VAL LYS ALA ILE TRP ALA ASP PRO LYS GLU VAL HIS ASP SEQRES 2 C 78 ALA GLY GLY ILE SER VAL GLY ASP ARG TRP LYS ALA LEU SEQRES 3 C 78 ALA ASN ALA LEU ASN ILE PRO LEU ASP GLN LEU SER ALA SEQRES 4 C 78 ARG ILE ASN ALA ASN PRO LYS GLY ARG PHE ILE TYR LEU SEQRES 5 C 78 ALA ARG GLN VAL ASN PRO ASP MET ALA ASP TYR ILE LYS SEQRES 6 C 78 LYS LEU LYS LEU PRO GLY ILE HIS LEU ARG GLU GLU SER SEQRES 1 D 78 VAL LYS ALA ILE TRP ALA ASP PRO LYS GLU VAL HIS ASP SEQRES 2 D 78 ALA GLY GLY ILE SER VAL GLY ASP ARG TRP LYS ALA LEU SEQRES 3 D 78 ALA ASN ALA LEU ASN ILE PRO LEU ASP GLN LEU SER ALA SEQRES 4 D 78 ARG ILE ASN ALA ASN PRO LYS GLY ARG PHE ILE TYR LEU SEQRES 5 D 78 ALA ARG GLN VAL ASN PRO ASP MET ALA ASP TYR ILE LYS SEQRES 6 D 78 LYS LEU LYS LEU PRO GLY ILE HIS LEU ARG GLU GLU SER SEQRES 1 E 78 VAL LYS ALA ILE TRP ALA ASP PRO LYS GLU VAL HIS ASP SEQRES 2 E 78 ALA GLY GLY ILE SER VAL GLY ASP ARG TRP LYS ALA LEU SEQRES 3 E 78 ALA ASN ALA LEU ASN ILE PRO LEU ASP GLN LEU SER ALA SEQRES 4 E 78 ARG ILE ASN ALA ASN PRO LYS GLY ARG PHE ILE TYR LEU SEQRES 5 E 78 ALA ARG GLN VAL ASN PRO ASP MET ALA ASP TYR ILE LYS SEQRES 6 E 78 LYS LEU LYS LEU PRO GLY ILE HIS LEU ARG GLU GLU SER SEQRES 1 F 78 VAL LYS ALA ILE TRP ALA ASP PRO LYS GLU VAL HIS ASP SEQRES 2 F 78 ALA GLY GLY ILE SER VAL GLY ASP ARG TRP LYS ALA LEU SEQRES 3 F 78 ALA ASN ALA LEU ASN ILE PRO LEU ASP GLN LEU SER ALA SEQRES 4 F 78 ARG ILE ASN ALA ASN PRO LYS GLY ARG PHE ILE TYR LEU SEQRES 5 F 78 ALA ARG GLN VAL ASN PRO ASP MET ALA ASP TYR ILE LYS SEQRES 6 F 78 LYS LEU LYS LEU PRO GLY ILE HIS LEU ARG GLU GLU SER SEQRES 1 G 78 VAL LYS ALA ILE TRP ALA ASP PRO LYS GLU VAL HIS ASP SEQRES 2 G 78 ALA GLY GLY ILE SER VAL GLY ASP ARG TRP LYS ALA LEU SEQRES 3 G 78 ALA ASN ALA LEU ASN ILE PRO LEU ASP GLN LEU SER ALA SEQRES 4 G 78 ARG ILE ASN ALA ASN PRO LYS GLY ARG PHE ILE TYR LEU SEQRES 5 G 78 ALA ARG GLN VAL ASN PRO ASP MET ALA ASP TYR ILE LYS SEQRES 6 G 78 LYS LEU LYS LEU PRO GLY ILE HIS LEU ARG GLU GLU SER SEQRES 1 H 78 VAL LYS ALA ILE TRP ALA ASP PRO LYS GLU VAL HIS ASP SEQRES 2 H 78 ALA GLY GLY ILE SER VAL GLY ASP ARG TRP LYS ALA LEU SEQRES 3 H 78 ALA ASN ALA LEU ASN ILE PRO LEU ASP GLN LEU SER ALA SEQRES 4 H 78 ARG ILE ASN ALA ASN PRO LYS GLY ARG PHE ILE TYR LEU SEQRES 5 H 78 ALA ARG GLN VAL ASN PRO ASP MET ALA ASP TYR ILE LYS SEQRES 6 H 78 LYS LEU LYS LEU PRO GLY ILE HIS LEU ARG GLU GLU SER HET TRS D1166 8 HET SO4 A1166 5 HET SO4 C1166 5 HET SO4 E1165 5 HET SO4 B1166 5 HET SO4 A1167 5 HET SO4 B1167 5 HET SO4 D1167 5 HET SO4 E1166 5 HETNAM SO4 SULFATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 2 SO4 8(O4 S 2-) FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 HOH *533(H2 O) HELIX 1 1 ASP A 94 ALA A 101 1 8 HELIX 2 2 SER A 105 ASN A 118 1 14 HELIX 3 3 PRO A 120 ALA A 130 1 11 HELIX 4 4 ASN A 144 LEU A 154 1 11 HELIX 5 5 ASP B 94 ALA B 101 1 8 HELIX 6 6 SER B 105 ASN B 118 1 14 HELIX 7 7 PRO B 120 ALA B 130 1 11 HELIX 8 8 ASN B 144 LEU B 154 1 11 HELIX 9 9 ASP C 94 ALA C 101 1 8 HELIX 10 10 SER C 105 LEU C 117 1 13 HELIX 11 11 PRO C 120 ALA C 130 1 11 HELIX 12 12 ASN C 144 LEU C 154 1 11 HELIX 13 13 ASP D 94 ALA D 101 1 8 HELIX 14 14 SER D 105 ASN D 118 1 14 HELIX 15 15 PRO D 120 ASN D 129 1 10 HELIX 16 16 ASN D 144 LYS D 153 1 10 HELIX 17 17 ASP E 94 ALA E 101 1 8 HELIX 18 18 SER E 105 LEU E 117 1 13 HELIX 19 19 PRO E 120 ALA E 130 1 11 HELIX 20 20 ASN E 144 LEU E 154 1 11 HELIX 21 21 ASP F 94 ALA F 101 1 8 HELIX 22 22 SER F 105 LEU F 117 1 13 HELIX 23 23 PRO F 120 ASN F 129 1 10 HELIX 24 24 ASN F 144 LEU F 154 1 11 HELIX 25 25 ASP G 94 ALA G 101 1 8 HELIX 26 26 SER G 105 ASN G 118 1 14 HELIX 27 27 PRO G 120 ALA G 130 1 11 HELIX 28 28 ASN G 144 LEU G 154 1 11 HELIX 29 29 ASP H 94 ALA H 101 1 8 HELIX 30 30 SER H 105 LEU H 117 1 13 HELIX 31 31 PRO H 120 ALA H 130 1 11 HELIX 32 32 ASN H 144 LEU H 154 1 11 SHEET 1 CA 3 ILE C 137 VAL C 143 0 SHEET 2 CA 3 LYS A 89 ALA A 93 -1 O LYS A 89 N VAL C 143 SHEET 3 CA 3 ILE C 159 GLU C 163 -1 O HIS C 160 N TRP A 92 SHEET 1 AA 3 ILE A 137 VAL A 143 0 SHEET 2 AA 3 LYS C 89 ALA C 93 -1 O LYS C 89 N VAL A 143 SHEET 3 AA 3 ILE A 159 GLU A 163 -1 O HIS A 160 N TRP C 92 SHEET 1 EA 3 ILE E 137 VAL E 143 0 SHEET 2 EA 3 LYS B 89 ALA B 93 -1 O LYS B 89 N VAL E 143 SHEET 3 EA 3 ILE E 159 GLU E 163 -1 O HIS E 160 N TRP B 92 SHEET 1 BA 4 ILE B 159 GLU B 163 0 SHEET 2 BA 4 LYS E 89 ALA E 93 -1 O ALA E 90 N ARG B 162 SHEET 3 BA 4 ILE B 137 VAL B 143 -1 O ILE B 137 N ALA E 93 SHEET 4 BA 4 GLU F 163 GLU F 164 -1 O GLU F 163 N ARG B 141 SHEET 1 HA 3 ILE H 137 VAL H 143 0 SHEET 2 HA 3 LYS D 89 ALA D 93 -1 O LYS D 89 N VAL H 143 SHEET 3 HA 3 ILE H 159 GLU H 163 -1 O HIS H 160 N TRP D 92 SHEET 1 DA 3 ILE D 137 ALA D 140 0 SHEET 2 DA 3 LYS H 89 ALA H 93 -1 O ILE H 91 N LEU D 139 SHEET 3 DA 3 ILE D 159 GLU D 163 -1 O HIS D 160 N TRP H 92 SITE 1 AC1 6 ASN A 144 HOH A2060 LYS D 152 HIS D 160 SITE 2 AC1 6 LEU D 161 HOH D2071 SITE 1 AC2 6 GLY A 103 ILE A 104 SER A 105 ARG A 109 SITE 2 AC2 6 HOH A2021 ASN C 129 SITE 1 AC3 5 ASN A 129 GLY C 103 ILE C 104 SER C 105 SITE 2 AC3 5 ARG C 109 SITE 1 AC4 6 ASN B 129 GLY E 103 ILE E 104 SER E 105 SITE 2 AC4 6 ARG E 109 HOH E2006 SITE 1 AC5 1 ARG B 141 SITE 1 AC6 1 ARG A 141 SITE 1 AC7 5 GLY B 103 ILE B 104 SER B 105 ARG B 109 SITE 2 AC7 5 ASN E 129 SITE 1 AC8 6 ARG C 141 ALA D 140 ARG D 141 HOH D2049 SITE 2 AC8 6 HOH D2050 LYS E 111 SITE 1 AC9 5 LYS C 111 ARG E 141 ALA F 140 ARG F 141 SITE 2 AC9 5 HOH F2045 CRYST1 56.048 55.959 82.285 89.13 76.49 65.99 P 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017842 -0.007947 -0.005022 0.00000 SCALE2 0.000000 0.019563 0.001766 0.00000 SCALE3 0.000000 0.000000 0.012550 0.00000