HEADER TRANSCRIPTION 19-APR-13 4BJT TITLE CRYSTAL STRUCTURE OF THE RAP1 C-TERMINAL DOMAIN (RAP1-RCT) IN COMPLEX TITLE 2 WITH THE RAP1 BINDING MODULE OF RIF1 (RIF1-RBM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN RAP1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN RAP1-RCT, RESIDUES 672-827; COMPND 5 SYNONYM: RAP1, REPRESSOR/ACTIVATOR SITE-BINDING PROTEIN, SBF-E, TUF; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TELOMERE LENGTH REGULATOR PROTEIN RIF1; COMPND 9 CHAIN: D, E, F; COMPND 10 FRAGMENT: RAP1 BINDING MODULE, RESIDUES 1752-1771; COMPND 11 SYNONYM: RAP1-INTERACTING FACTOR 1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 ATCC: 204508; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PAD DERIVED; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 15 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 16 ORGANISM_TAXID: 559292 KEYWDS TRANSCRIPTION, GENOME STABILITY, TELOMERE ASSOCIATED PROTEINS EXPDTA X-RAY DIFFRACTION AUTHOR T.SHI,R.D.BUNKER,H.GUT,A.SCRIMA,N.H.THOMA REVDAT 4 20-DEC-23 4BJT 1 REMARK REVDAT 3 27-MAR-19 4BJT 1 SOURCE REVDAT 2 03-JUL-13 4BJT 1 ATOM ANISOU REVDAT 1 19-JUN-13 4BJT 0 JRNL AUTH T.SHI,R.D.BUNKER,S.MATTAROCCI,C.RIBEYRE,M.FATY,H.GUT, JRNL AUTH 2 A.SCRIMA,U.RASS,S.M.RUBIN,D.SHORE,N.H.THOMA JRNL TITL RIF1 AND RIF2 SHAPE TELOMERE FUNCATION AND ARCHITECTURE JRNL TITL 2 THROUGH MULTIVALENT RAP1 INTERACTIONS JRNL REF CELL(CAMBRIDGE,MASS.) V. 153 1340 2013 JRNL REFN ISSN 0092-8674 JRNL PMID 23746845 JRNL DOI 10.1016/J.CELL.2013.05.007 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 103339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 5133 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 7471 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1919 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7120 REMARK 3 BIN R VALUE (WORKING SET) : 0.1915 REMARK 3 BIN FREE R VALUE : 0.2010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 351 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 646 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.81470 REMARK 3 B22 (A**2) : -4.34690 REMARK 3 B33 (A**2) : 7.16160 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.16060 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.064 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.064 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.070 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.064 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8004 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 14493 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1741 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 125 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1165 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8004 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 534 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 17 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9151 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.43 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.48 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -44.2109 16.2628 -23.7192 REMARK 3 T TENSOR REMARK 3 T11: -0.0070 T22: -0.0843 REMARK 3 T33: -0.0593 T12: -0.0340 REMARK 3 T13: 0.0053 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.8074 L22: 1.6017 REMARK 3 L33: 1.9352 L12: 0.8331 REMARK 3 L13: -0.5897 L23: -0.4858 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: -0.0052 S13: 0.0211 REMARK 3 S21: -0.0143 S22: 0.0026 S23: 0.0170 REMARK 3 S31: -0.2504 S32: 0.1188 S33: -0.0215 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -37.0215 26.8981 4.4626 REMARK 3 T TENSOR REMARK 3 T11: 0.0012 T22: -0.0655 REMARK 3 T33: -0.0444 T12: -0.0265 REMARK 3 T13: 0.0361 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.0996 L22: 1.8596 REMARK 3 L33: 0.6159 L12: 1.0602 REMARK 3 L13: -0.0629 L23: -0.3650 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: -0.0082 S13: -0.0072 REMARK 3 S21: -0.0154 S22: 0.0106 S23: -0.0037 REMARK 3 S31: 0.0921 S32: -0.0236 S33: -0.0058 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -6.4805 44.7226 -14.5928 REMARK 3 T TENSOR REMARK 3 T11: -0.0942 T22: 0.0137 REMARK 3 T33: -0.0826 T12: 0.0020 REMARK 3 T13: 0.0101 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.9549 L22: 0.2990 REMARK 3 L33: 1.5987 L12: -0.0006 REMARK 3 L13: 0.6078 L23: 0.2445 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0092 S13: -0.0317 REMARK 3 S21: 0.0020 S22: 0.0137 S23: 0.0058 REMARK 3 S31: 0.0143 S32: 0.2795 S33: -0.0155 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4BJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056533. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103829 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3OWT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4-2.5 M AMMONIUM SULFATE, 100 MM NA REMARK 280 CITRATE PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.00500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.00500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C2085 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 626 REMARK 465 ALA A 627 REMARK 465 SER A 628 REMARK 465 ASN A 629 REMARK 465 SER A 630 REMARK 465 TYR A 631 REMARK 465 ALA A 632 REMARK 465 ILE A 633 REMARK 465 PRO A 634 REMARK 465 GLU A 635 REMARK 465 ASN A 636 REMARK 465 GLU A 637 REMARK 465 LEU A 638 REMARK 465 LEU A 639 REMARK 465 ASP A 640 REMARK 465 GLU A 641 REMARK 465 ASP A 642 REMARK 465 THR A 643 REMARK 465 MET A 644 REMARK 465 ASN A 645 REMARK 465 PHE A 646 REMARK 465 ILE A 647 REMARK 465 SER A 648 REMARK 465 SER A 649 REMARK 465 LEU A 650 REMARK 465 LYS A 651 REMARK 465 ASN A 652 REMARK 465 ASP A 653 REMARK 465 LEU A 654 REMARK 465 SER A 655 REMARK 465 ASN A 656 REMARK 465 ILE A 657 REMARK 465 SER A 658 REMARK 465 ASN A 659 REMARK 465 SER A 660 REMARK 465 LEU A 661 REMARK 465 PRO A 662 REMARK 465 PHE A 663 REMARK 465 GLU A 664 REMARK 465 TYR A 665 REMARK 465 PRO A 666 REMARK 465 HIS A 667 REMARK 465 GLU A 668 REMARK 465 ILE A 669 REMARK 465 ALA A 670 REMARK 465 GLU A 671 REMARK 465 ALA A 672 REMARK 465 ILE A 673 REMARK 465 ARG A 674 REMARK 465 SER A 675 REMARK 465 GLY B 626 REMARK 465 ALA B 627 REMARK 465 SER B 628 REMARK 465 ASN B 629 REMARK 465 SER B 630 REMARK 465 TYR B 631 REMARK 465 ALA B 632 REMARK 465 ILE B 633 REMARK 465 PRO B 634 REMARK 465 GLU B 635 REMARK 465 ASN B 636 REMARK 465 GLU B 637 REMARK 465 LEU B 638 REMARK 465 LEU B 639 REMARK 465 ASP B 640 REMARK 465 GLU B 641 REMARK 465 ASP B 642 REMARK 465 THR B 643 REMARK 465 MET B 644 REMARK 465 ASN B 645 REMARK 465 PHE B 646 REMARK 465 ILE B 647 REMARK 465 SER B 648 REMARK 465 SER B 649 REMARK 465 LEU B 650 REMARK 465 LYS B 651 REMARK 465 ASN B 652 REMARK 465 ASP B 653 REMARK 465 LEU B 654 REMARK 465 SER B 655 REMARK 465 ASN B 656 REMARK 465 ILE B 657 REMARK 465 SER B 658 REMARK 465 ASN B 659 REMARK 465 SER B 660 REMARK 465 LEU B 661 REMARK 465 PRO B 662 REMARK 465 PHE B 663 REMARK 465 GLU B 664 REMARK 465 TYR B 665 REMARK 465 PRO B 666 REMARK 465 HIS B 667 REMARK 465 GLU B 668 REMARK 465 ILE B 669 REMARK 465 ALA B 670 REMARK 465 GLU B 671 REMARK 465 ALA B 672 REMARK 465 ILE B 673 REMARK 465 ARG B 674 REMARK 465 SER B 675 REMARK 465 GLY C 626 REMARK 465 ALA C 627 REMARK 465 SER C 628 REMARK 465 ASN C 629 REMARK 465 SER C 630 REMARK 465 TYR C 631 REMARK 465 ALA C 632 REMARK 465 ILE C 633 REMARK 465 PRO C 634 REMARK 465 GLU C 635 REMARK 465 ASN C 636 REMARK 465 GLU C 637 REMARK 465 LEU C 638 REMARK 465 LEU C 639 REMARK 465 ASP C 640 REMARK 465 GLU C 641 REMARK 465 ASP C 642 REMARK 465 THR C 643 REMARK 465 MET C 644 REMARK 465 ASN C 645 REMARK 465 PHE C 646 REMARK 465 ILE C 647 REMARK 465 SER C 648 REMARK 465 SER C 649 REMARK 465 LEU C 650 REMARK 465 LYS C 651 REMARK 465 ASN C 652 REMARK 465 ASP C 653 REMARK 465 LEU C 654 REMARK 465 SER C 655 REMARK 465 ASN C 656 REMARK 465 ILE C 657 REMARK 465 SER C 658 REMARK 465 ASN C 659 REMARK 465 SER C 660 REMARK 465 LEU C 661 REMARK 465 PRO C 662 REMARK 465 PHE C 663 REMARK 465 GLU C 664 REMARK 465 TYR C 665 REMARK 465 PRO C 666 REMARK 465 HIS C 667 REMARK 465 GLU C 668 REMARK 465 ILE C 669 REMARK 465 ALA C 670 REMARK 465 GLU C 671 REMARK 465 ALA C 672 REMARK 465 ILE C 673 REMARK 465 ARG C 674 REMARK 465 SER C 675 REMARK 465 ALA D 1013 REMARK 465 ASP D 1014 REMARK 465 ILE D 1015 REMARK 465 SER D 1016 REMARK 465 VAL D 1017 REMARK 465 LEU D 1018 REMARK 465 PRO D 1019 REMARK 465 GLU D 1020 REMARK 465 SER D 1028 REMARK 465 LEU D 1029 REMARK 465 LYS D 1030 REMARK 465 MET D 1031 REMARK 465 GLN D 1032 REMARK 465 ALA E 1013 REMARK 465 ASP E 1014 REMARK 465 ILE E 1015 REMARK 465 SER E 1016 REMARK 465 VAL E 1017 REMARK 465 LEU E 1018 REMARK 465 PRO E 1019 REMARK 465 GLU E 1020 REMARK 465 SER E 1028 REMARK 465 LEU E 1029 REMARK 465 LYS E 1030 REMARK 465 MET E 1031 REMARK 465 GLN E 1032 REMARK 465 ALA F 1013 REMARK 465 ASP F 1014 REMARK 465 ILE F 1015 REMARK 465 SER F 1016 REMARK 465 VAL F 1017 REMARK 465 LEU F 1018 REMARK 465 PRO F 1019 REMARK 465 GLU F 1020 REMARK 465 SER F 1028 REMARK 465 LEU F 1029 REMARK 465 LYS F 1030 REMARK 465 MET F 1031 REMARK 465 GLN F 1032 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 734 CG CD OE1 OE2 REMARK 470 GLU A 823 CG CD OE1 OE2 REMARK 470 GLU B 823 CG CD OE1 OE2 REMARK 470 GLU C 823 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS B 721 O HOH B 2071 1.57 REMARK 500 O ASP B 825 HH22 ARG E 1022 1.59 REMARK 500 HG1 THR B 699 OD1 ASP B 701 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2113 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B2156 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH C2146 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH E2002 DISTANCE = 6.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1828 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 1828 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BJ1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE RIF2 REMARK 900 RELATED ID: 4BJ5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIF2 IN COMPLEX WITH THE C- TERMINAL DOMAIN OF REMARK 900 RAP1 (RAP1-RCT) REMARK 900 RELATED ID: 4BJ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE RIF2 IN COMPLEX WITH THE C-TERMINAL DOMAIN OF REMARK 900 RAP1 (RAP1-RCT) REMARK 900 RELATED ID: 4BJS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RIF1 C-TERMINAL DOMAIN (RIF1 -CTD) FROM REMARK 900 SACCHAROMYCES CEREVISIAE DBREF 4BJT A 627 827 UNP P11938 RAP1_YEAST 627 827 DBREF 4BJT B 627 827 UNP P11938 RAP1_YEAST 627 827 DBREF 4BJT C 627 827 UNP P11938 RAP1_YEAST 627 827 DBREF 4BJT D 1013 1032 UNP P29539 RIF1_YEAST 1752 1771 DBREF 4BJT E 1013 1032 UNP P29539 RIF1_YEAST 1752 1771 DBREF 4BJT F 1013 1032 UNP P29539 RIF1_YEAST 1752 1771 SEQADV 4BJT GLY A 626 UNP P11938 EXPRESSION TAG SEQADV 4BJT GLY B 626 UNP P11938 EXPRESSION TAG SEQADV 4BJT GLY C 626 UNP P11938 EXPRESSION TAG SEQRES 1 A 202 GLY ALA SER ASN SER TYR ALA ILE PRO GLU ASN GLU LEU SEQRES 2 A 202 LEU ASP GLU ASP THR MET ASN PHE ILE SER SER LEU LYS SEQRES 3 A 202 ASN ASP LEU SER ASN ILE SER ASN SER LEU PRO PHE GLU SEQRES 4 A 202 TYR PRO HIS GLU ILE ALA GLU ALA ILE ARG SER ASP PHE SEQRES 5 A 202 SER ASN GLU ASP ILE TYR ASP ASN ILE ASP PRO ASP THR SEQRES 6 A 202 ILE SER PHE PRO PRO LYS ILE ALA THR THR ASP LEU PHE SEQRES 7 A 202 LEU PRO LEU PHE PHE HIS PHE GLY SER THR ARG GLN PHE SEQRES 8 A 202 MET ASP LYS LEU HIS GLU VAL ILE SER GLY ASP TYR GLU SEQRES 9 A 202 PRO SER GLN ALA GLU LYS LEU VAL GLN ASP LEU CYS ASP SEQRES 10 A 202 GLU THR GLY ILE ARG LYS ASN PHE SER THR SER ILE LEU SEQRES 11 A 202 THR CYS LEU SER GLY ASP LEU MET VAL PHE PRO ARG TYR SEQRES 12 A 202 PHE LEU ASN MET PHE LYS ASP ASN VAL ASN PRO PRO PRO SEQRES 13 A 202 ASN VAL PRO GLY ILE TRP THR HIS ASP ASP ASP GLU SER SEQRES 14 A 202 LEU LYS SER ASN ASP GLN GLU GLN ILE ARG LYS LEU VAL SEQRES 15 A 202 LYS LYS HIS GLY THR GLY ARG MET GLU MET ARG LYS ARG SEQRES 16 A 202 PHE PHE GLU LYS ASP LEU LEU SEQRES 1 B 202 GLY ALA SER ASN SER TYR ALA ILE PRO GLU ASN GLU LEU SEQRES 2 B 202 LEU ASP GLU ASP THR MET ASN PHE ILE SER SER LEU LYS SEQRES 3 B 202 ASN ASP LEU SER ASN ILE SER ASN SER LEU PRO PHE GLU SEQRES 4 B 202 TYR PRO HIS GLU ILE ALA GLU ALA ILE ARG SER ASP PHE SEQRES 5 B 202 SER ASN GLU ASP ILE TYR ASP ASN ILE ASP PRO ASP THR SEQRES 6 B 202 ILE SER PHE PRO PRO LYS ILE ALA THR THR ASP LEU PHE SEQRES 7 B 202 LEU PRO LEU PHE PHE HIS PHE GLY SER THR ARG GLN PHE SEQRES 8 B 202 MET ASP LYS LEU HIS GLU VAL ILE SER GLY ASP TYR GLU SEQRES 9 B 202 PRO SER GLN ALA GLU LYS LEU VAL GLN ASP LEU CYS ASP SEQRES 10 B 202 GLU THR GLY ILE ARG LYS ASN PHE SER THR SER ILE LEU SEQRES 11 B 202 THR CYS LEU SER GLY ASP LEU MET VAL PHE PRO ARG TYR SEQRES 12 B 202 PHE LEU ASN MET PHE LYS ASP ASN VAL ASN PRO PRO PRO SEQRES 13 B 202 ASN VAL PRO GLY ILE TRP THR HIS ASP ASP ASP GLU SER SEQRES 14 B 202 LEU LYS SER ASN ASP GLN GLU GLN ILE ARG LYS LEU VAL SEQRES 15 B 202 LYS LYS HIS GLY THR GLY ARG MET GLU MET ARG LYS ARG SEQRES 16 B 202 PHE PHE GLU LYS ASP LEU LEU SEQRES 1 C 202 GLY ALA SER ASN SER TYR ALA ILE PRO GLU ASN GLU LEU SEQRES 2 C 202 LEU ASP GLU ASP THR MET ASN PHE ILE SER SER LEU LYS SEQRES 3 C 202 ASN ASP LEU SER ASN ILE SER ASN SER LEU PRO PHE GLU SEQRES 4 C 202 TYR PRO HIS GLU ILE ALA GLU ALA ILE ARG SER ASP PHE SEQRES 5 C 202 SER ASN GLU ASP ILE TYR ASP ASN ILE ASP PRO ASP THR SEQRES 6 C 202 ILE SER PHE PRO PRO LYS ILE ALA THR THR ASP LEU PHE SEQRES 7 C 202 LEU PRO LEU PHE PHE HIS PHE GLY SER THR ARG GLN PHE SEQRES 8 C 202 MET ASP LYS LEU HIS GLU VAL ILE SER GLY ASP TYR GLU SEQRES 9 C 202 PRO SER GLN ALA GLU LYS LEU VAL GLN ASP LEU CYS ASP SEQRES 10 C 202 GLU THR GLY ILE ARG LYS ASN PHE SER THR SER ILE LEU SEQRES 11 C 202 THR CYS LEU SER GLY ASP LEU MET VAL PHE PRO ARG TYR SEQRES 12 C 202 PHE LEU ASN MET PHE LYS ASP ASN VAL ASN PRO PRO PRO SEQRES 13 C 202 ASN VAL PRO GLY ILE TRP THR HIS ASP ASP ASP GLU SER SEQRES 14 C 202 LEU LYS SER ASN ASP GLN GLU GLN ILE ARG LYS LEU VAL SEQRES 15 C 202 LYS LYS HIS GLY THR GLY ARG MET GLU MET ARG LYS ARG SEQRES 16 C 202 PHE PHE GLU LYS ASP LEU LEU SEQRES 1 D 20 ALA ASP ILE SER VAL LEU PRO GLU ILE ARG ILE PRO ILE SEQRES 2 D 20 PHE ASN SER LEU LYS MET GLN SEQRES 1 E 20 ALA ASP ILE SER VAL LEU PRO GLU ILE ARG ILE PRO ILE SEQRES 2 E 20 PHE ASN SER LEU LYS MET GLN SEQRES 1 F 20 ALA ASP ILE SER VAL LEU PRO GLU ILE ARG ILE PRO ILE SEQRES 2 F 20 PHE ASN SER LEU LYS MET GLN HET EDO A1828 10 HET EDO B1828 10 HET EDO C1828 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 7 EDO 3(C2 H6 O2) FORMUL 10 HOH *646(H2 O) HELIX 1 1 GLU A 680 ASN A 685 1 6 HELIX 2 2 ASP A 687 ILE A 691 5 5 HELIX 3 3 LEU A 704 HIS A 709 1 6 HELIX 4 4 SER A 712 SER A 725 1 14 HELIX 5 5 GLN A 732 GLY A 745 1 14 HELIX 6 6 ARG A 747 LEU A 758 1 12 HELIX 7 7 VAL A 764 ASN A 776 1 13 HELIX 8 8 THR A 788 SER A 797 1 10 HELIX 9 9 ASP A 799 GLY A 811 1 13 HELIX 10 10 GLY A 811 LYS A 824 1 14 HELIX 11 11 GLU B 680 ASN B 685 1 6 HELIX 12 12 ASP B 687 ILE B 691 5 5 HELIX 13 13 LEU B 704 HIS B 709 1 6 HELIX 14 14 SER B 712 SER B 725 1 14 HELIX 15 15 GLN B 732 GLY B 745 1 14 HELIX 16 16 ARG B 747 LEU B 758 1 12 HELIX 17 17 VAL B 764 ASN B 776 1 13 HELIX 18 18 THR B 788 ASN B 798 1 11 HELIX 19 19 ASP B 799 GLY B 811 1 13 HELIX 20 20 GLY B 811 LYS B 824 1 14 HELIX 21 21 GLU C 680 ASN C 685 1 6 HELIX 22 22 ASP C 687 ILE C 691 5 5 HELIX 23 23 LEU C 704 HIS C 709 1 6 HELIX 24 24 SER C 712 SER C 725 1 14 HELIX 25 25 GLN C 732 GLY C 745 1 14 HELIX 26 26 ARG C 747 LEU C 758 1 12 HELIX 27 27 VAL C 764 ASN C 776 1 13 HELIX 28 28 THR C 788 SER C 797 1 10 HELIX 29 29 ASP C 799 GLY C 811 1 13 HELIX 30 30 GLY C 811 LYS C 824 1 14 CISPEP 1 PHE A 693 PRO A 694 0 -3.05 CISPEP 2 ASN A 778 PRO A 779 0 -4.42 CISPEP 3 PHE B 693 PRO B 694 0 -1.89 CISPEP 4 ASN B 778 PRO B 779 0 -2.97 CISPEP 5 PHE C 693 PRO C 694 0 -3.57 CISPEP 6 ASN C 778 PRO C 779 0 -3.75 SITE 1 AC1 2 ILE A 682 HOH A2008 SITE 1 AC2 2 ILE C 682 HOH C2008 CRYST1 164.010 88.900 57.580 90.00 90.09 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006097 0.000000 0.000010 0.00000 SCALE2 0.000000 0.011249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017367 0.00000