HEADER RECEPTOR 30-APR-13 4BKW TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF HUMAN ZFYVE9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN INTERACTING DOMAIN, RESIDUES 895-1425; COMPND 5 SYNONYM: MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG-INTERACTING PROTEIN, COMPND 6 MADH-INTERACTING PROTEIN, NOVEL SERINE PROTEASE, NSP, RECEPTOR COMPND 7 ACTIVATION ANCHOR, HSARA, SMAD ANCHOR FOR RECEPTOR ACTIVATION, COMPND 8 ZFYVE9C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 10 OTHER_DETAILS: MGM KEYWDS RECEPTOR, PROTEIN INTERACTION DOMAIN, TGF-BETA AND EGFR SIGNALLING, KEYWDS 2 SGC EXPDTA X-RAY DIFFRACTION AUTHOR E.WILLIAMS,T.KROJER,M.VOLLMAR,L.SHRESTHA,F.VON DELFT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,A.BULLOCK REVDAT 3 08-MAY-24 4BKW 1 REMARK REVDAT 2 13-SEP-17 4BKW 1 REMARK REVDAT 1 15-MAY-13 4BKW 0 JRNL AUTH E.WILLIAMS JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF HUMAN ZFYVE9 JRNL REF PH D THESIS 2013 JRNL PUBL NULL: UNIVERSITY OF OXFORD (THESIS) REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1037 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2885 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2425 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2729 REMARK 3 BIN R VALUE (WORKING SET) : 0.2394 REMARK 3 BIN FREE R VALUE : 0.2982 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.41 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 156 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3688 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52820 REMARK 3 B22 (A**2) : 0.52820 REMARK 3 B33 (A**2) : -1.05650 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.326 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.459 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.269 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.438 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.269 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3800 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5143 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1283 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 84 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 543 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3800 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 503 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4057 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.82 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.57 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED REGIONS WERE LEFT UN- REMARK 3 MODELED. IDEAL-DIST CONTACT TERM CONTACT SETUP. ALL ATOMS HAVE REMARK 3 CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4BKW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 19.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 0.15M MAGNESIUM REMARK 280 CHLORIDE, 30% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.54900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.54900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.54900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 77.54900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.54900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 77.54900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 912 REMARK 465 VAL A 913 REMARK 465 LYS A 914 REMARK 465 GLY A 915 REMARK 465 ASP A 916 REMARK 465 GLY A 935 REMARK 465 GLY A 936 REMARK 465 LYS A 1210 REMARK 465 SER A 1211 REMARK 465 SER A 1212 REMARK 465 SER A 1213 REMARK 465 GLY A 1214 REMARK 465 TYR A 1215 REMARK 465 LEU A 1216 REMARK 465 THR A 1251 REMARK 465 CYS A 1252 REMARK 465 GLY A 1253 REMARK 465 LYS A 1254 REMARK 465 ALA A 1255 REMARK 465 ASP A 1256 REMARK 465 ALA A 1257 REMARK 465 GLU A 1258 REMARK 465 GLU A 1259 REMARK 465 PRO A 1260 REMARK 465 GLN A 1261 REMARK 465 GLY A 1299 REMARK 465 SER A 1300 REMARK 465 ASN A 1319 REMARK 465 ASP A 1320 REMARK 465 ASP A 1321 REMARK 465 GLN A 1322 REMARK 465 HIS A 1323 REMARK 465 ASN A 1324 REMARK 465 CYS A 1325 REMARK 465 LEU A 1326 REMARK 465 SER A 1327 REMARK 465 ASP A 1328 REMARK 465 PRO A 1329 REMARK 465 ALA A 1330 REMARK 465 ASP A 1331 REMARK 465 HIS A 1332 REMARK 465 GLY A 1402 REMARK 465 GLY A 1403 REMARK 465 ALA A 1404 REMARK 465 CYS A 1405 REMARK 465 GLN A 1406 REMARK 465 LEU A 1407 REMARK 465 SER A 1408 REMARK 465 GLU A 1409 REMARK 465 GLY A 1410 REMARK 465 PRO A 1411 REMARK 465 VAL A 1425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 902 CG OD1 OD2 REMARK 470 TYR A 917 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 930 CG CD OE1 NE2 REMARK 470 GLU A 933 CG CD OE1 OE2 REMARK 470 ASP A 934 CG OD1 OD2 REMARK 470 LYS A 989 CG CD CE NZ REMARK 470 LYS A1028 CG CD CE NZ REMARK 470 LYS A1061 CE NZ REMARK 470 LYS A1096 CD CE NZ REMARK 470 ARG A1114 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1117 CG CD OE1 NE2 REMARK 470 ASP A1129 OD1 OD2 REMARK 470 LYS A1153 CG CD CE NZ REMARK 470 GLU A1156 CG CD OE1 OE2 REMARK 470 HIS A1157 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A1262 CG CD OE1 OE2 REMARK 470 ASP A1270 CG OD1 OD2 REMARK 470 LYS A1273 CG CD CE NZ REMARK 470 ASN A1274 CG OD1 ND2 REMARK 470 LYS A1295 CG CD CE NZ REMARK 470 HIS A1298 CG ND1 CD2 CE1 NE2 REMARK 470 SER A1333 OG REMARK 470 ARG A1334 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1337 CD OE1 OE2 REMARK 470 LYS A1341 CG CD CE NZ REMARK 470 ASP A1369 CG OD1 OD2 REMARK 470 SER A1370 OG REMARK 470 ASP A1371 CG OD1 OD2 REMARK 470 GLN A1372 CG CD OE1 NE2 REMARK 470 HIS A1401 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 933 30.60 -96.78 REMARK 500 THR A1039 -76.71 -119.41 REMARK 500 GLN A1044 107.83 -41.83 REMARK 500 ASN A1115 -16.00 84.19 REMARK 500 GLU A1223 -108.47 59.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2366 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 2367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2371 DBREF 4BKW A 895 1425 UNP O95405 ZFYV9_HUMAN 895 1425 SEQRES 1 A 531 ALA MET ASN LEU ILE PRO GLU ASP GLY LEU PRO PRO ILE SEQRES 2 A 531 LEU ILE SER THR GLY VAL LYS GLY ASP TYR ALA VAL GLU SEQRES 3 A 531 GLU LYS PRO SER GLN ILE SER VAL MET GLN GLN LEU GLU SEQRES 4 A 531 ASP GLY GLY PRO ASP PRO LEU VAL PHE VAL LEU ASN ALA SEQRES 5 A 531 ASN LEU LEU SER MET VAL LYS ILE VAL ASN TYR VAL ASN SEQRES 6 A 531 ARG LYS CYS TRP CYS PHE THR THR LYS GLY MET HIS ALA SEQRES 7 A 531 VAL GLY GLN SER GLU ILE VAL ILE LEU LEU GLN CYS LEU SEQRES 8 A 531 PRO ASP GLU LYS CYS LEU PRO LYS ASP ILE PHE ASN HIS SEQRES 9 A 531 PHE VAL GLN LEU TYR ARG ASP ALA LEU ALA GLY ASN VAL SEQRES 10 A 531 VAL SER ASN LEU GLY HIS SER PHE PHE SER GLN SER PHE SEQRES 11 A 531 LEU GLY SER LYS GLU HIS GLY GLY PHE LEU TYR VAL THR SEQRES 12 A 531 SER THR TYR GLN SER LEU GLN ASP LEU VAL LEU PRO THR SEQRES 13 A 531 PRO PRO TYR LEU PHE GLY ILE LEU ILE GLN LYS TRP GLU SEQRES 14 A 531 THR PRO TRP ALA LYS VAL PHE PRO ILE ARG LEU MET LEU SEQRES 15 A 531 ARG LEU GLY ALA GLU TYR ARG LEU TYR PRO CYS PRO LEU SEQRES 16 A 531 PHE SER VAL ARG PHE ARG LYS PRO LEU PHE GLY GLU THR SEQRES 17 A 531 GLY HIS THR ILE MET ASN LEU LEU ALA ASP PHE ARG ASN SEQRES 18 A 531 TYR GLN TYR THR LEU PRO VAL VAL GLN GLY LEU VAL VAL SEQRES 19 A 531 ASP MET GLU VAL ARG LYS THR SER ILE LYS ILE PRO SER SEQRES 20 A 531 ASN ARG TYR ASN GLU MET MET LYS ALA MET ASN LYS SER SEQRES 21 A 531 ASN GLU HIS VAL LEU ALA GLY GLY ALA CYS PHE ASN GLU SEQRES 22 A 531 LYS ALA ASP SER HIS LEU VAL CYS VAL GLN ASN ASP ASP SEQRES 23 A 531 GLY ASN TYR GLN THR GLN ALA ILE SER ILE HIS ASN GLN SEQRES 24 A 531 PRO ARG LYS VAL THR GLY ALA SER PHE PHE VAL PHE SER SEQRES 25 A 531 GLY ALA LEU LYS SER SER SER GLY TYR LEU ALA LYS SER SEQRES 26 A 531 SER ILE VAL GLU ASP GLY VAL MET VAL GLN ILE THR ALA SEQRES 27 A 531 GLU ASN MET ASP SER LEU ARG GLN ALA LEU ARG GLU MET SEQRES 28 A 531 LYS ASP PHE THR ILE THR CYS GLY LYS ALA ASP ALA GLU SEQRES 29 A 531 GLU PRO GLN GLU HIS ILE HIS ILE GLN TRP VAL ASP ASP SEQRES 30 A 531 ASP LYS ASN VAL SER LYS GLY VAL VAL SER PRO ILE ASP SEQRES 31 A 531 GLY LYS SER MET GLU THR ILE THR ASN VAL LYS ILE PHE SEQRES 32 A 531 HIS GLY SER GLU TYR LYS ALA ASN GLY LYS VAL ILE ARG SEQRES 33 A 531 TRP THR GLU VAL PHE PHE LEU GLU ASN ASP ASP GLN HIS SEQRES 34 A 531 ASN CYS LEU SER ASP PRO ALA ASP HIS SER ARG LEU THR SEQRES 35 A 531 GLU HIS VAL ALA LYS ALA PHE CYS LEU ALA LEU CYS PRO SEQRES 36 A 531 HIS LEU LYS LEU LEU LYS GLU ASP GLY MET THR LYS LEU SEQRES 37 A 531 GLY LEU ARG VAL THR LEU ASP SER ASP GLN VAL GLY TYR SEQRES 38 A 531 GLN ALA GLY SER ASN GLY GLN PRO LEU PRO SER GLN TYR SEQRES 39 A 531 MET ASN ASP LEU ASP SER ALA LEU VAL PRO VAL ILE HIS SEQRES 40 A 531 GLY GLY ALA CYS GLN LEU SER GLU GLY PRO VAL VAL MET SEQRES 41 A 531 GLU LEU ILE PHE TYR ILE LEU GLU ASN ILE VAL HET EDO A2366 4 HET PG4 A2367 13 HET EDO A2368 4 HET EDO A2369 4 HET EDO A2370 4 HET EDO A2371 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 5(C2 H6 O2) FORMUL 3 PG4 C8 H18 O5 FORMUL 8 HOH *52(H2 O) HELIX 1 1 SER A 924 GLU A 933 1 10 HELIX 2 2 MET A 970 GLY A 974 5 5 HELIX 3 3 LYS A 993 ALA A 1008 1 16 HELIX 4 4 GLU A 1063 PHE A 1070 1 8 HELIX 5 5 PHE A 1070 ARG A 1083 1 14 HELIX 6 6 THR A 1105 LEU A 1110 5 6 HELIX 7 7 ARG A 1143 LYS A 1153 1 11 HELIX 8 8 THR A 1231 GLU A 1244 1 14 HELIX 9 9 SER A 1333 CYS A 1348 1 16 HELIX 10 10 HIS A 1350 ASP A 1357 1 8 HELIX 11 11 PRO A 1385 GLN A 1387 5 3 HELIX 12 12 TYR A 1388 HIS A 1401 1 14 SHEET 1 AA 7 ALA A 918 GLU A 920 0 SHEET 2 AA 7 ILE A 907 ILE A 909 -1 O ILE A 907 N GLU A 920 SHEET 3 AA 7 LEU A 940 ASN A 945 -1 O VAL A 941 N LEU A 908 SHEET 4 AA 7 LEU A 948 TYR A 957 -1 O LEU A 948 N LEU A 944 SHEET 5 AA 7 ARG A 960 LYS A 968 -1 O ARG A 960 N TYR A 957 SHEET 6 AA 7 GLU A 977 GLN A 983 -1 O ILE A 978 N THR A 967 SHEET 7 AA 7 PHE A1090 SER A1091 1 O SER A1091 N GLN A 983 SHEET 1 AB 9 ALA A 918 GLU A 920 0 SHEET 2 AB 9 ILE A 907 ILE A 909 -1 O ILE A 907 N GLU A 920 SHEET 3 AB 9 LEU A 940 ASN A 945 -1 O VAL A 941 N LEU A 908 SHEET 4 AB 9 LEU A 948 TYR A 957 -1 O LEU A 948 N LEU A 944 SHEET 5 AB 9 ARG A 960 LYS A 968 -1 O ARG A 960 N TYR A 957 SHEET 6 AB 9 GLU A 977 GLN A 983 -1 O ILE A 978 N THR A 967 SHEET 7 AB 9 TYR A1053 GLN A1060 1 O LEU A1054 N VAL A 979 SHEET 8 AB 9 HIS A1030 VAL A1036 -1 N GLY A1031 O ILE A1059 SHEET 9 AB 9 HIS A1017 PHE A1019 -1 O SER A1018 N PHE A1033 SHEET 1 AC 2 PHE A1090 SER A1091 0 SHEET 2 AC 2 GLU A 977 GLN A 983 1 O LEU A 981 N SER A1091 SHEET 1 AD 7 TYR A1183 SER A1189 0 SHEET 2 AD 7 SER A1171 GLN A1177 -1 O HIS A1172 N ILE A1188 SHEET 3 AD 7 THR A1198 GLY A1199 1 O GLY A1199 N LEU A1173 SHEET 4 AD 7 VAL A1127 GLU A1131 -1 O MET A1130 N THR A1198 SHEET 5 AD 7 LYS A1134 PRO A1140 -1 O LYS A1134 N GLU A1131 SHEET 6 AD 7 HIS A1263 VAL A1269 1 O HIS A1263 N THR A1135 SHEET 7 AD 7 PHE A1248 ILE A1250 -1 O PHE A1248 N ILE A1266 SHEET 1 AE 4 VAL A1158 GLY A1162 0 SHEET 2 AE 4 PHE A1202 SER A1206 -1 O PHE A1203 N GLY A1161 SHEET 3 AE 4 GLY A1225 GLN A1229 1 O VAL A1226 N VAL A1204 SHEET 4 AE 4 LYS A1218 VAL A1222 -1 O LYS A1218 N GLN A1229 SHEET 1 AF 2 THR A1292 LYS A1295 0 SHEET 2 AF 2 LYS A1307 PHE A1316 -1 O VAL A1314 N VAL A1294 SHEET 1 AG 2 TYR A1302 ALA A1304 0 SHEET 2 AG 2 LYS A1307 PHE A1316 1 O LYS A1307 N ALA A1304 SHEET 1 AH 5 VAL A1373 SER A1379 0 SHEET 2 AH 5 LYS A1361 LEU A1368 -1 O GLY A1363 N GLY A1378 SHEET 3 AH 5 VAL A1413 GLU A1422 -1 O MET A1414 N VAL A1366 SHEET 4 AH 5 LYS A1307 PHE A1316 -1 O VAL A1308 N LEU A1421 SHEET 5 AH 5 TYR A1302 ALA A1304 1 O TYR A1302 N ILE A1309 SHEET 1 AI 5 VAL A1373 SER A1379 0 SHEET 2 AI 5 LYS A1361 LEU A1368 -1 O GLY A1363 N GLY A1378 SHEET 3 AI 5 VAL A1413 GLU A1422 -1 O MET A1414 N VAL A1366 SHEET 4 AI 5 LYS A1307 PHE A1316 -1 O VAL A1308 N LEU A1421 SHEET 5 AI 5 THR A1292 LYS A1295 -1 O THR A1292 N PHE A1316 CISPEP 1 PRO A 1051 PRO A 1052 0 2.60 CISPEP 2 TYR A 1085 PRO A 1086 0 -5.11 SITE 1 AC1 6 GLY A1103 HIS A1104 GLY A1181 ASN A1182 SITE 2 AC1 6 TYR A1183 ILE A1221 SITE 1 AC2 6 ARG A1077 ALA A1080 GLU A1081 ASN A1178 SITE 2 AC2 6 GLN A1184 GLN A1186 SITE 1 AC3 3 GLU A1081 TYR A1082 ARG A1083 SITE 1 AC4 3 GLY A 974 SER A 976 VAL A1012 SITE 1 AC5 2 MET A1130 THR A1198 SITE 1 AC6 5 TYR A1040 GLN A1041 LEU A1084 TYR A1085 SITE 2 AC6 5 HOH A2052 CRYST1 113.751 113.751 155.098 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008791 0.005076 0.000000 0.00000 SCALE2 0.000000 0.010151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006448 0.00000