HEADER TRANSFERASE 30-APR-13 4BL1 TITLE CRYSTAL STRUCTURE OF UNPHOSPHORYLATED MATERNAL EMBRYONIC LEUCINE TITLE 2 ZIPPER KINASE (MELK) IN COMPLEX WITH AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATERNAL EMBRYONIC LEUCINE ZIPPER KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE AND UBA DOMAINS, RESIDUES 2-340; COMPND 5 SYNONYM: HMELK, PROTEIN KINASE EG3, PEG3 KINASE, PROTEIN KINASE PK38, COMPND 6 HPK38, TYROSINE-PROTEIN KINASE MELK; COMPND 7 EC: 2.7.11.1, 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.CANEVARI,S.RE-DEPAOLINI,U.CUCCHI,B.FORTE,P.CARPINELLI,J.A.BERTRAND REVDAT 3 20-DEC-23 4BL1 1 REMARK REVDAT 2 24-APR-19 4BL1 1 SOURCE REVDAT 1 08-MAY-13 4BL1 0 SPRSDE 08-MAY-13 4BL1 3ZGW JRNL AUTH G.CANEVARI,S.RE-DEPAOLINI,U.CUCCHI,B.FORTE,P.CARPINELLI, JRNL AUTH 2 J.A.BERTRAND JRNL TITL CRYSTAL STRUCTURE OF UNPHOSPHORYLATED MATERNAL EMBRYONIC JRNL TITL 2 LEUCINE ZIPPER KINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 766 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.34000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 3.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.571 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2651 ; 0.025 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3589 ; 2.677 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 8.243 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;35.965 ;24.215 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 489 ;20.775 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.449 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1943 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11375 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 63.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZMU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3350, 0.1M BIS-TRIS PH 6.5, REMARK 280 0.2M SODIUM CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.02500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.02500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 PRO A 1 REMARK 465 GLY A 48 REMARK 465 SER A 49 REMARK 465 ASP A 50 REMARK 465 PRO A 157 REMARK 465 LYS A 158 REMARK 465 GLY A 159 REMARK 465 ASN A 160 REMARK 465 LYS A 161 REMARK 465 ASP A 162 REMARK 465 TYR A 163 REMARK 465 HIS A 164 REMARK 465 LEU A 165 REMARK 465 GLN A 166 REMARK 465 THR A 167 REMARK 465 CYS A 168 REMARK 465 CYS A 169 REMARK 465 GLY A 170 REMARK 465 SER A 184 REMARK 465 TYR A 185 REMARK 465 LEU A 186 REMARK 465 LEU A 334 REMARK 465 SER A 335 REMARK 465 SER A 336 REMARK 465 PHE A 337 REMARK 465 SER A 338 REMARK 465 CYS A 339 REMARK 465 GLY A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 57 CD GLU A 57 OE1 0.066 REMARK 500 HIS A 74 CG HIS A 74 CD2 0.057 REMARK 500 TYR A 97 CB TYR A 97 CG -0.096 REMARK 500 HIS A 124 CG HIS A 124 CD2 0.062 REMARK 500 HIS A 130 CG HIS A 130 CD2 0.062 REMARK 500 HIS A 144 CG HIS A 144 CD2 0.071 REMARK 500 PHE A 206 CG PHE A 206 CD1 0.099 REMARK 500 SER A 236 CB SER A 236 OG 0.079 REMARK 500 TRP A 308 CE2 TRP A 308 CD2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 53 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 96 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 114 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 LYS A 145 CD - CE - NZ ANGL. DEV. = -17.8 DEGREES REMARK 500 ASP A 150 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 LYS A 230 CD - CE - NZ ANGL. DEV. = -15.9 DEGREES REMARK 500 LEU A 290 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG A 298 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 14 -149.89 -119.07 REMARK 500 ALA A 79 -37.33 -33.22 REMARK 500 ILE A 99 -37.99 -38.96 REMARK 500 ASP A 102 -52.33 78.37 REMARK 500 ASP A 102 -49.87 76.06 REMARK 500 ARG A 131 5.93 83.33 REMARK 500 ASP A 132 53.41 -152.47 REMARK 500 LYS A 134 156.92 176.64 REMARK 500 GLN A 265 129.97 -36.00 REMARK 500 ASP A 266 -6.39 72.41 REMARK 500 TYR A 267 -50.18 -121.08 REMARK 500 ILE A 280 -81.44 -99.21 REMARK 500 ASN A 297 122.00 -37.23 REMARK 500 SER A 306 15.31 -67.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BKY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNPHOSPHORYLATED MATERNAL EMBRYONIC LEUCINE REMARK 900 ZIPPER KINASE (MELK) IN COMPLEX WITH PYRROLOPYRAZOLE INHIBITOR REMARK 900 RELATED ID: 4BKZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UNPHOSPHORYLATED MATERNAL EMBRYONIC LEUCINE REMARK 900 ZIPPER KINASE (MELK) IN COMPLEX WITH A BENZODIPYRAZOLE INHIBITOR DBREF 4BL1 A 2 340 UNP Q14680 MELK_HUMAN 2 340 SEQADV 4BL1 GLY A 0 UNP Q14680 EXPRESSION TAG SEQADV 4BL1 PRO A 1 UNP Q14680 EXPRESSION TAG SEQADV 4BL1 HIS A 341 UNP Q14680 EXPRESSION TAG SEQADV 4BL1 HIS A 342 UNP Q14680 EXPRESSION TAG SEQADV 4BL1 HIS A 343 UNP Q14680 EXPRESSION TAG SEQADV 4BL1 HIS A 344 UNP Q14680 EXPRESSION TAG SEQADV 4BL1 HIS A 345 UNP Q14680 EXPRESSION TAG SEQADV 4BL1 HIS A 346 UNP Q14680 EXPRESSION TAG SEQRES 1 A 347 GLY PRO LYS ASP TYR ASP GLU LEU LEU LYS TYR TYR GLU SEQRES 2 A 347 LEU HIS GLU THR ILE GLY THR GLY GLY PHE ALA LYS VAL SEQRES 3 A 347 LYS LEU ALA CYS HIS ILE LEU THR GLY GLU MET VAL ALA SEQRES 4 A 347 ILE LYS ILE MET ASP LYS ASN THR LEU GLY SER ASP LEU SEQRES 5 A 347 PRO ARG ILE LYS THR GLU ILE GLU ALA LEU LYS ASN LEU SEQRES 6 A 347 ARG HIS GLN HIS ILE CYS GLN LEU TYR HIS VAL LEU GLU SEQRES 7 A 347 THR ALA ASN LYS ILE PHE MET VAL LEU GLU TYR CYS PRO SEQRES 8 A 347 GLY GLY GLU LEU PHE ASP TYR ILE ILE SER GLN ASP ARG SEQRES 9 A 347 LEU SER GLU GLU GLU THR ARG VAL VAL PHE ARG GLN ILE SEQRES 10 A 347 VAL SER ALA VAL ALA TYR VAL HIS SER GLN GLY TYR ALA SEQRES 11 A 347 HIS ARG ASP LEU LYS PRO GLU ASN LEU LEU PHE ASP GLU SEQRES 12 A 347 TYR HIS LYS LEU LYS LEU ILE ASP PHE GLY LEU CYS ALA SEQRES 13 A 347 LYS PRO LYS GLY ASN LYS ASP TYR HIS LEU GLN THR CYS SEQRES 14 A 347 CYS GLY SER LEU ALA TYR ALA ALA PRO GLU LEU ILE GLN SEQRES 15 A 347 GLY LYS SER TYR LEU GLY SER GLU ALA ASP VAL TRP SER SEQRES 16 A 347 MET GLY ILE LEU LEU TYR VAL LEU MET CYS GLY PHE LEU SEQRES 17 A 347 PRO PHE ASP ASP ASP ASN VAL MET ALA LEU TYR LYS LYS SEQRES 18 A 347 ILE MET ARG GLY LYS TYR ASP VAL PRO LYS TRP LEU SER SEQRES 19 A 347 PRO SER SER ILE LEU LEU LEU GLN GLN MET LEU GLN VAL SEQRES 20 A 347 ASP PRO LYS LYS ARG ILE SER MET LYS ASN LEU LEU ASN SEQRES 21 A 347 HIS PRO TRP ILE MET GLN ASP TYR ASN TYR PRO VAL GLU SEQRES 22 A 347 TRP GLN SER LYS ASN PRO PHE ILE HIS LEU ASP ASP ASP SEQRES 23 A 347 CYS VAL THR GLU LEU SER VAL HIS HIS ARG ASN ASN ARG SEQRES 24 A 347 GLN THR MET GLU ASP LEU ILE SER LEU TRP GLN TYR ASP SEQRES 25 A 347 HIS LEU THR ALA THR TYR LEU LEU LEU LEU ALA LYS LYS SEQRES 26 A 347 ALA ARG GLY LYS PRO VAL ARG LEU ARG LEU SER SER PHE SEQRES 27 A 347 SER CYS GLY HIS HIS HIS HIS HIS HIS HET ANP A1000 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 HOH *47(H2 O) HELIX 1 1 PRO A 52 ASN A 63 1 12 HELIX 2 2 GLU A 93 ASP A 102 1 10 HELIX 3 3 SER A 105 GLN A 126 1 22 HELIX 4 4 LYS A 134 GLU A 136 5 3 HELIX 5 5 SER A 171 ALA A 175 5 5 HELIX 6 6 ALA A 176 GLN A 181 1 6 HELIX 7 7 SER A 188 GLY A 205 1 18 HELIX 8 8 ASN A 213 GLY A 224 1 12 HELIX 9 9 SER A 233 LEU A 244 1 12 HELIX 10 10 ASP A 247 ARG A 251 5 5 HELIX 11 11 SER A 253 ASN A 259 1 7 HELIX 12 12 HIS A 260 GLN A 265 1 6 HELIX 13 13 ASP A 283 HIS A 294 1 12 HELIX 14 14 ASN A 297 SER A 306 1 10 HELIX 15 15 ASP A 311 ARG A 326 1 16 SHEET 1 AA 5 TYR A 11 THR A 19 0 SHEET 2 AA 5 LYS A 24 HIS A 30 -1 O VAL A 25 N ILE A 17 SHEET 3 AA 5 MET A 36 ASP A 43 -1 O VAL A 37 N ALA A 28 SHEET 4 AA 5 LYS A 81 GLU A 87 -1 O ILE A 82 N MET A 42 SHEET 5 AA 5 LEU A 72 GLU A 77 -1 N TYR A 73 O VAL A 85 SHEET 1 AB 2 LEU A 138 PHE A 140 0 SHEET 2 AB 2 LEU A 146 LEU A 148 -1 O LYS A 147 N LEU A 139 SITE 1 AC1 17 GLY A 18 GLY A 20 GLY A 21 PHE A 22 SITE 2 AC1 17 ALA A 23 VAL A 25 ALA A 38 LYS A 40 SITE 3 AC1 17 ARG A 53 CYS A 70 GLU A 87 CYS A 89 SITE 4 AC1 17 GLU A 93 GLU A 136 LEU A 139 ASP A 150 SITE 5 AC1 17 HOH A2024 CRYST1 60.020 63.810 92.050 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016661 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010864 0.00000 TER 2561 ARG A 333 HETATM 2562 PG ANP A1000 12.301 13.924 12.867 1.00 55.21 P HETATM 2563 O1G ANP A1000 12.263 15.422 13.534 1.00 56.56 O HETATM 2564 O2G ANP A1000 12.089 14.070 11.376 1.00 47.38 O HETATM 2565 O3G ANP A1000 11.338 12.917 13.700 1.00 56.48 O HETATM 2566 PB ANP A1000 15.139 13.409 12.388 1.00 43.48 P HETATM 2567 O1B ANP A1000 15.229 14.900 12.262 1.00 40.71 O HETATM 2568 O2B ANP A1000 16.231 12.622 13.368 1.00 43.05 O HETATM 2569 N3B ANP A1000 13.729 13.027 13.295 1.00 49.66 N HETATM 2570 PA ANP A1000 14.405 11.485 10.258 1.00 45.64 P HETATM 2571 O1A ANP A1000 12.879 11.493 10.450 1.00 47.79 O HETATM 2572 O2A ANP A1000 15.059 10.263 10.964 1.00 38.01 O HETATM 2573 O3A ANP A1000 14.983 12.939 10.772 1.00 38.88 O HETATM 2574 O5' ANP A1000 14.797 11.728 8.678 1.00 41.46 O HETATM 2575 C5' ANP A1000 14.435 12.941 8.025 1.00 42.88 C HETATM 2576 C4' ANP A1000 13.774 12.625 6.682 1.00 38.26 C HETATM 2577 O4' ANP A1000 14.752 12.294 5.694 1.00 47.62 O HETATM 2578 C3' ANP A1000 12.939 11.400 6.631 1.00 41.22 C HETATM 2579 O3' ANP A1000 11.559 11.597 6.977 1.00 44.22 O HETATM 2580 C2' ANP A1000 13.149 10.842 5.194 1.00 41.42 C HETATM 2581 O2' ANP A1000 12.320 11.419 4.206 1.00 39.15 O HETATM 2582 C1' ANP A1000 14.619 11.102 4.916 1.00 39.31 C HETATM 2583 N9 ANP A1000 15.317 9.812 5.369 1.00 33.82 N HETATM 2584 C8 ANP A1000 15.680 9.438 6.681 1.00 34.74 C HETATM 2585 N7 ANP A1000 16.215 8.142 6.764 1.00 29.53 N HETATM 2586 C5 ANP A1000 16.191 7.663 5.447 1.00 23.84 C HETATM 2587 C6 ANP A1000 16.583 6.407 4.755 1.00 25.44 C HETATM 2588 N6 ANP A1000 17.050 5.364 5.553 1.00 27.65 N HETATM 2589 N1 ANP A1000 16.465 6.249 3.337 1.00 29.11 N HETATM 2590 C2 ANP A1000 15.909 7.247 2.602 1.00 27.13 C HETATM 2591 N3 ANP A1000 15.542 8.443 3.226 1.00 28.70 N HETATM 2592 C4 ANP A1000 15.610 8.716 4.578 1.00 27.80 C HETATM 2593 O HOH A2001 33.144 20.631 7.997 1.00 44.09 O HETATM 2594 O HOH A2002 36.293 19.664 4.083 1.00 49.28 O HETATM 2595 O HOH A2003 40.643 8.982 11.735 1.00 31.11 O HETATM 2596 O HOH A2004 34.278 2.923 1.638 1.00 38.61 O HETATM 2597 O HOH A2005 31.552 13.813 -2.265 1.00 53.32 O HETATM 2598 O HOH A2006 21.495 0.504 1.453 1.00 26.58 O HETATM 2599 O HOH A2007 28.929 3.825 17.951 1.00 45.57 O HETATM 2600 O HOH A2008 6.797 -9.386 5.915 1.00 46.99 O HETATM 2601 O HOH A2009 21.696 -1.653 0.700 1.00 31.40 O HETATM 2602 O HOH A2010 20.631 -3.816 5.699 1.00 50.27 O HETATM 2603 O HOH A2011 16.545 -0.512 -0.097 1.00 40.15 O HETATM 2604 O HOH A2012 1.161 6.803 -5.644 1.00 56.51 O HETATM 2605 O HOH A2013 -10.094 2.903 1.966 1.00 34.59 O HETATM 2606 O HOH A2014 -5.000 0.361 -2.964 1.00 36.53 O HETATM 2607 O HOH A2015 41.344 -0.385 0.578 1.00 43.17 O HETATM 2608 O HOH A2016 -9.880 -4.293 -0.936 1.00 39.20 O HETATM 2609 O HOH A2017 3.365 -10.902 8.039 1.00 25.52 O HETATM 2610 O HOH A2018 13.201 -9.925 24.791 1.00 49.92 O HETATM 2611 O HOH A2019 12.595 -10.978 18.748 1.00 40.87 O HETATM 2612 O HOH A2020 6.617 -1.635 24.765 1.00 64.73 O HETATM 2613 O HOH A2021 11.160 7.027 18.204 1.00 32.47 O HETATM 2614 O HOH A2022 4.102 5.702 18.483 1.00 31.84 O HETATM 2615 O HOH A2023 3.432 9.290 20.468 1.00 52.74 O HETATM 2616 O HOH A2024 10.494 10.858 9.431 1.00 44.17 O HETATM 2617 O HOH A2025 6.669 -8.732 3.583 1.00 45.77 O HETATM 2618 O HOH A2026 -5.517 12.190 14.222 1.00 34.08 O HETATM 2619 O HOH A2027 -3.828 10.743 18.982 1.00 29.50 O HETATM 2620 O HOH A2028 -12.527 12.588 11.942 1.00 37.71 O HETATM 2621 O HOH A2029 -9.528 23.516 12.984 1.00 51.08 O HETATM 2622 O HOH A2030 -13.457 13.715 19.384 1.00 38.38 O HETATM 2623 O HOH A2031 -14.211 2.814 14.304 1.00 28.47 O HETATM 2624 O HOH A2032 -17.638 9.351 3.867 1.00 44.51 O HETATM 2625 O HOH A2033 -12.681 -9.722 8.640 1.00 27.51 O HETATM 2626 O HOH A2034 -16.800 2.862 15.567 1.00 46.55 O HETATM 2627 O HOH A2035 -9.979 -6.570 22.122 1.00 54.63 O HETATM 2628 O HOH A2036 -11.882 3.720 25.890 1.00 45.52 O HETATM 2629 O HOH A2037 -7.339 -7.599 23.188 1.00 52.78 O HETATM 2630 O HOH A2038 -8.109 -11.009 17.844 1.00 43.20 O HETATM 2631 O HOH A2039 -9.304 -15.328 4.458 1.00 41.48 O HETATM 2632 O HOH A2040 7.211 -14.809 13.796 1.00 36.09 O HETATM 2633 O HOH A2041 10.773 -18.808 16.683 1.00 44.86 O HETATM 2634 O HOH A2042 12.783 -12.133 16.602 1.00 30.15 O HETATM 2635 O HOH A2043 44.855 -12.909 2.834 1.00 49.35 O HETATM 2636 O HOH A2044 42.951 -1.893 2.209 1.00 48.24 O HETATM 2637 O HOH A2045 36.730 -2.514 4.948 1.00 44.43 O HETATM 2638 O HOH A2046 37.197 3.017 10.778 1.00 37.33 O HETATM 2639 O HOH A2047 39.095 0.071 5.719 1.00 37.64 O CONECT 2562 2563 2564 2565 2569 CONECT 2563 2562 CONECT 2564 2562 CONECT 2565 2562 CONECT 2566 2567 2568 2569 2573 CONECT 2567 2566 CONECT 2568 2566 CONECT 2569 2562 2566 CONECT 2570 2571 2572 2573 2574 CONECT 2571 2570 CONECT 2572 2570 CONECT 2573 2566 2570 CONECT 2574 2570 2575 CONECT 2575 2574 2576 CONECT 2576 2575 2577 2578 CONECT 2577 2576 2582 CONECT 2578 2576 2579 2580 CONECT 2579 2578 CONECT 2580 2578 2581 2582 CONECT 2581 2580 CONECT 2582 2577 2580 2583 CONECT 2583 2582 2584 2592 CONECT 2584 2583 2585 CONECT 2585 2584 2586 CONECT 2586 2585 2587 2592 CONECT 2587 2586 2588 2589 CONECT 2588 2587 CONECT 2589 2587 2590 CONECT 2590 2589 2591 CONECT 2591 2590 2592 CONECT 2592 2583 2586 2591 MASTER 379 0 1 15 7 0 5 6 2633 1 31 27 END