HEADER OXIDOREDUCTASE 03-MAY-13 4BLL TITLE CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS TITLE 2 OSTREATUS - CRYSTAL FORM II COMPND MOL_ID: 1; COMPND 2 MOLECULE: VERSATILE PEROXIDASE I; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLEUROTUS OSTREATUS; SOURCE 3 ORGANISM_COMMON: OYSTER MUSHROOM; SOURCE 4 ORGANISM_TAXID: 5322; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 316407; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: W3110 KEYWDS OXIDOREDUCTASE, CLASS II FUNGAL PEROXIDASES EXPDTA X-RAY DIFFRACTION AUTHOR F.J.MEDRANO,A.ROMERO REVDAT 2 20-DEC-23 4BLL 1 TITLE JRNL REMARK LINK REVDAT 1 15-JAN-14 4BLL 0 JRNL AUTH E.FERNANDEZ-FUEYO,F.J.RUIZ-DUENAS,M.J.MARTINEZ,A.ROMERO, JRNL AUTH 2 K.E.HAMMEL,F.J.MEDRANO,A.T.MARTINEZ JRNL TITL LIGNINOLYTIC PEROXIDASE GENES IN THE OYSTER MUSHROOM GENOME: JRNL TITL 2 HETEROLOGOUS EXPRESSION, MOLECULAR STRUCTURE, CATALYTIC AND JRNL TITL 3 STABILITY PROPERTIES, AND LIGNIN-DEGRADING ABILITY. JRNL REF BIOTECHNOL.BIOFUELS V. 7 2 2014 JRNL REFN ESSN 1754-6834 JRNL PMID 24387130 JRNL DOI 10.1186/1754-6834-7-2 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 150017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.136 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5134 - 3.4150 1.00 5022 264 0.1380 0.1482 REMARK 3 2 3.4150 - 2.7107 1.00 4979 259 0.1398 0.1504 REMARK 3 3 2.7107 - 2.3681 1.00 4959 261 0.1207 0.1333 REMARK 3 4 2.3681 - 2.1516 1.00 4950 262 0.1101 0.1186 REMARK 3 5 2.1516 - 1.9973 1.00 4970 259 0.1068 0.1024 REMARK 3 6 1.9973 - 1.8796 1.00 4951 256 0.1079 0.1244 REMARK 3 7 1.8796 - 1.7854 1.00 4931 262 0.1029 0.1253 REMARK 3 8 1.7854 - 1.7077 1.00 4890 264 0.0996 0.1043 REMARK 3 9 1.7077 - 1.6420 1.00 4944 260 0.0912 0.1117 REMARK 3 10 1.6420 - 1.5853 1.00 4902 255 0.0933 0.1164 REMARK 3 11 1.5853 - 1.5357 1.00 4916 260 0.0893 0.1020 REMARK 3 12 1.5357 - 1.4918 0.99 4903 257 0.0914 0.1040 REMARK 3 13 1.4918 - 1.4526 0.99 4921 265 0.0940 0.1138 REMARK 3 14 1.4526 - 1.4171 0.99 4877 254 0.0976 0.1197 REMARK 3 15 1.4171 - 1.3849 0.99 4940 266 0.1033 0.1305 REMARK 3 16 1.3849 - 1.3554 0.99 4847 253 0.1064 0.1237 REMARK 3 17 1.3554 - 1.3283 0.98 4843 244 0.1128 0.1358 REMARK 3 18 1.3283 - 1.3032 0.99 4858 258 0.1166 0.1306 REMARK 3 19 1.3032 - 1.2800 0.98 4833 253 0.1230 0.1346 REMARK 3 20 1.2800 - 1.2583 0.98 4827 254 0.1274 0.1369 REMARK 3 21 1.2583 - 1.2380 0.97 4807 249 0.1360 0.1551 REMARK 3 22 1.2380 - 1.2189 0.97 4808 255 0.1472 0.1764 REMARK 3 23 1.2189 - 1.2010 0.97 4776 252 0.1517 0.1689 REMARK 3 24 1.2010 - 1.1841 0.96 4719 254 0.1562 0.1725 REMARK 3 25 1.1841 - 1.1681 0.95 4684 243 0.1644 0.1592 REMARK 3 26 1.1681 - 1.1529 0.93 4613 240 0.1823 0.1832 REMARK 3 27 1.1529 - 1.1385 0.90 4443 230 0.1975 0.2271 REMARK 3 28 1.1385 - 1.1248 0.87 4228 227 0.2181 0.2219 REMARK 3 29 1.1248 - 1.1117 0.80 3971 205 0.2418 0.2648 REMARK 3 30 1.1117 - 1.0992 0.66 3224 160 0.2695 0.2811 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2473 REMARK 3 ANGLE : 1.483 3381 REMARK 3 CHIRALITY : 0.088 373 REMARK 3 PLANARITY : 0.009 453 REMARK 3 DIHEDRAL : 13.495 874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 154452 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3FMU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-ACETATE AT PH 4.5 & 20 % PEG REMARK 280 -1000, 0.2 M ZN(OAC)2. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.58500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.37750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.79250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 320 REMARK 465 GLY A 321 REMARK 465 PRO A 322 REMARK 465 VAL A 323 REMARK 465 THR A 324 REMARK 465 SER A 325 REMARK 465 VAL A 326 REMARK 465 PRO A 327 REMARK 465 PRO A 328 REMARK 465 VAL A 329 REMARK 465 PRO A 330 REMARK 465 GLY A 331 REMARK 465 SER A 332 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 37 O HOH A 2064 1.66 REMARK 500 O HOH A 2211 O HOH A 2213 1.80 REMARK 500 O HOH A 2202 O HOH A 2205 1.83 REMARK 500 O HOH A 2211 O HOH A 2214 2.00 REMARK 500 OE2 GLU A 84 O HOH A 2064 2.01 REMARK 500 OE1 GLU A 244 O HOH A 2328 2.02 REMARK 500 O HOH A 2062 O HOH A 2194 2.03 REMARK 500 OE1 GLU A 141 O HOH A 2209 2.04 REMARK 500 O HOH A 2328 O HOH A 2329 2.06 REMARK 500 O HOH A 2211 O HOH A 2212 2.06 REMARK 500 O HOH A 2003 O HOH A 2016 2.06 REMARK 500 OD2 ASP A 129 O HOH A 2195 2.06 REMARK 500 O HOH A 2003 O HOH A 2017 2.07 REMARK 500 O HOH A 2003 O HOH A 2005 2.07 REMARK 500 O HOH A 2212 O HOH A 2215 2.07 REMARK 500 OD1 ASP A 70 O HOH A 2124 2.08 REMARK 500 OD1 ASP A 272 O HOH A 2362 2.14 REMARK 500 O HOH A 2003 O HOH A 2372 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS A 233 ZN ZN A 1321 3454 1.14 REMARK 500 O HOH A 2088 O HOH A 2384 4555 1.82 REMARK 500 O HOH A 2064 O HOH A 2282 4545 1.88 REMARK 500 O HOH A 2029 O HOH A 2279 4545 2.05 REMARK 500 O HOH A 2261 O HOH A 2279 4545 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2170 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1320 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 27 OE1 REMARK 620 2 GLU A 27 OE2 85.8 REMARK 620 3 GLU A 27 OE1 84.1 1.8 REMARK 620 4 ASP A 238 OD2 86.6 1.8 3.1 REMARK 620 5 HOH A2226 O 82.2 4.5 3.3 4.5 REMARK 620 6 HOH A2320 O 85.4 3.6 3.9 2.3 3.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1321 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD1 REMARK 620 2 ASP A 31 OD2 54.8 REMARK 620 3 GLU A 38 OE2 92.4 120.2 REMARK 620 4 HIS A 233 NE2 93.6 120.0 109.2 REMARK 620 5 HOH A2047 O 157.0 102.5 104.2 95.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1322 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 37 OE2 REMARK 620 2 GLU A 41 OE2 111.2 REMARK 620 3 GLU A 84 OE2 84.1 141.1 REMARK 620 4 GLU A 84 OE1 138.1 98.5 54.9 REMARK 620 5 HOH A2064 O 39.9 146.0 45.8 100.7 REMARK 620 6 HOH A2065 O 99.1 109.7 102.3 97.8 95.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 O REMARK 620 2 ASP A 49 OD1 82.3 REMARK 620 3 GLY A 61 O 69.4 94.3 REMARK 620 4 ASP A 63 OD1 136.4 84.4 70.5 REMARK 620 5 SER A 65 OG 145.9 91.7 144.7 75.6 REMARK 620 6 HOH A2086 O 72.4 88.6 140.9 148.5 73.9 REMARK 620 7 HOH A2094 O 100.6 169.6 96.0 99.8 80.3 82.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 NE2 REMARK 620 2 HEM A 500 NA 98.7 REMARK 620 3 HEM A 500 NB 96.5 89.8 REMARK 620 4 HEM A 500 NC 98.6 162.7 89.0 REMARK 620 5 HEM A 500 ND 97.4 88.3 166.1 88.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 171 OG REMARK 620 2 SER A 171 O 72.5 REMARK 620 3 ASP A 188 OD1 117.4 78.4 REMARK 620 4 ASP A 188 OD2 76.1 92.0 50.6 REMARK 620 5 THR A 190 OG1 140.4 146.4 78.1 91.4 REMARK 620 6 THR A 190 O 147.2 81.8 75.5 125.8 69.3 REMARK 620 7 VAL A 193 O 82.0 86.2 149.3 157.6 102.5 76.1 REMARK 620 8 ASP A 195 OD1 69.2 141.0 126.6 86.2 72.6 129.6 81.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1322 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BLK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM I REMARK 900 RELATED ID: 4BLN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM III REMARK 900 RELATED ID: 4BLX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM IV REMARK 900 RELATED ID: 4BLY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM V REMARK 900 RELATED ID: 4BLZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM VI REMARK 900 RELATED ID: 4BM0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM VII REMARK 900 RELATED ID: 4BM1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM I REMARK 900 RELATED ID: 4BM2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM II REMARK 900 RELATED ID: 4BM3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM III REMARK 900 RELATED ID: 4BM4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM IV DBREF 4BLL A 1 332 PDB 4BLL 4BLL 1 332 SEQRES 1 A 332 MET ALA THR CYS ALA ASP GLY ARG THR THR ALA ASN ALA SEQRES 2 A 332 ALA CYS CYS VAL LEU PHE PRO ILE LEU ASP ASP ILE GLN SEQRES 3 A 332 GLU ASN LEU PHE ASP GLY ALA GLN CYS GLY GLU GLU VAL SEQRES 4 A 332 HIS GLU SER LEU ARG LEU THR PHE HIS ASP ALA ILE GLY SEQRES 5 A 332 PHE SER PRO THR LEU GLY GLY GLY GLY ALA ASP GLY SER SEQRES 6 A 332 ILE ILE THR PHE ASP THR ILE GLU THR ASN PHE PRO ALA SEQRES 7 A 332 ASN ALA GLY ILE ASP GLU ILE VAL SER ALA GLN LYS PRO SEQRES 8 A 332 PHE VAL ALA LYS HIS ASN ILE SER ALA GLY ASP PHE ILE SEQRES 9 A 332 GLN PHE ALA GLY ALA VAL GLY VAL SER ASN CYS PRO GLY SEQRES 10 A 332 GLY VAL ARG ILE PRO PHE PHE LEU GLY ARG PRO ASP ALA SEQRES 11 A 332 VAL ALA ALA SER PRO ASP HIS LEU VAL PRO GLU PRO PHE SEQRES 12 A 332 ASP SER VAL ASP THR ILE LEU ALA ARG MET GLY ASP ALA SEQRES 13 A 332 GLY PHE SER ALA VAL GLU VAL VAL TRP LEU LEU ALA SER SEQRES 14 A 332 HIS SER ILE ALA ALA ALA ASP LYS VAL ASP PRO SER ILE SEQRES 15 A 332 PRO GLY THR PRO PHE ASP SER THR PRO GLY VAL PHE ASP SEQRES 16 A 332 SER GLN PHE PHE ILE GLU THR GLN LEU LYS GLY ARG LEU SEQRES 17 A 332 PHE PRO GLY THR PRO ASP ASN LYS GLY GLU VAL GLN SER SEQRES 18 A 332 PRO LEU GLN GLY GLU ILE ARG LEU GLN SER ASP HIS LEU SEQRES 19 A 332 LEU ALA ARG ASP PRO GLN THR ALA CYS GLU TRP GLN SER SEQRES 20 A 332 MET VAL ASN ASN GLN PRO LYS ILE GLN ASN ARG PHE ALA SEQRES 21 A 332 GLY THR MET SER LYS MET ALA LEU LEU GLY GLN ASP LYS SEQRES 22 A 332 SER LYS LEU ILE ASP CYS SER ASP ILE ILE PRO THR PRO SEQRES 23 A 332 PRO ALA LEU VAL GLY ALA ALA HIS LEU PRO ALA GLY PHE SEQRES 24 A 332 SER LEU SER ASP VAL GLU GLN ALA CYS ALA GLU THR PRO SEQRES 25 A 332 PHE PRO ALA LEU THR ALA ASP PRO GLY PRO VAL THR SER SEQRES 26 A 332 VAL PRO PRO VAL PRO GLY SER HET CA A 400 1 HET CA A 401 1 HET HEM A 500 73 HET ZN A1320 1 HET ZN A1321 1 HET ZN A1322 1 HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ZN ZINC ION HETSYN HEM HEME FORMUL 2 CA 2(CA 2+) FORMUL 4 HEM C34 H32 FE N4 O4 FORMUL 5 ZN 3(ZN 2+) FORMUL 8 HOH *401(H2 O) HELIX 1 1 ASN A 12 CYS A 16 5 5 HELIX 2 2 VAL A 17 LEU A 29 1 13 HELIX 3 3 GLY A 36 ILE A 51 1 16 HELIX 4 4 GLY A 64 PHE A 69 1 6 HELIX 5 5 PHE A 69 THR A 74 1 6 HELIX 6 6 ASN A 75 ALA A 80 5 6 HELIX 7 7 ILE A 82 ASN A 97 1 16 HELIX 8 8 SER A 99 ASN A 114 1 16 HELIX 9 9 SER A 145 GLY A 157 1 13 HELIX 10 10 SER A 159 LEU A 167 1 9 HELIX 11 11 ALA A 168 ILE A 172 5 5 HELIX 12 12 SER A 196 THR A 202 1 7 HELIX 13 13 GLN A 230 ALA A 236 1 7 HELIX 14 14 THR A 241 MET A 248 1 8 HELIX 15 15 ASN A 251 LEU A 268 1 18 HELIX 16 16 ASP A 272 LEU A 276 5 5 HELIX 17 17 SER A 280 ILE A 283 5 4 HELIX 18 18 SER A 300 ASP A 303 5 4 SHEET 1 AA 2 PHE A 124 LEU A 125 0 SHEET 2 AA 2 ILE A 277 ASP A 278 -1 O ILE A 277 N LEU A 125 SHEET 1 AB 2 ALA A 174 ALA A 175 0 SHEET 2 AB 2 THR A 185 PRO A 186 -1 O THR A 185 N ALA A 175 SHEET 1 AC 2 GLU A 218 VAL A 219 0 SHEET 2 AC 2 ARG A 228 LEU A 229 -1 O ARG A 228 N VAL A 219 SSBOND 1 CYS A 4 CYS A 16 1555 1555 2.05 SSBOND 2 CYS A 15 CYS A 279 1555 1555 2.08 SSBOND 3 CYS A 35 CYS A 115 1555 1555 2.04 SSBOND 4 CYS A 243 CYS A 308 1555 1555 2.13 LINK OE1 GLU A 27 ZN ZN A1320 1555 4545 1.89 LINK OE2 GLU A 27 ZN ZN A1320 3454 1555 2.68 LINK OE1 GLU A 27 ZN ZN A1320 3454 1555 1.89 LINK OD1 ASP A 31 ZN ZN A1321 1555 1555 2.57 LINK OD2 ASP A 31 ZN ZN A1321 1555 1555 1.98 LINK OE2 GLU A 37 ZN ZN A1322 1555 1555 1.92 LINK OE2 GLU A 38 ZN ZN A1321 1555 1555 1.94 LINK OE2 GLU A 41 ZN ZN A1322 1555 1555 1.86 LINK O ASP A 49 CA CA A 400 1555 1555 2.46 LINK OD1 ASP A 49 CA CA A 400 1555 1555 2.32 LINK O GLY A 61 CA CA A 400 1555 1555 2.43 LINK OD1 ASP A 63 CA CA A 400 1555 1555 2.43 LINK OG SER A 65 CA CA A 400 1555 1555 2.42 LINK OE2 GLU A 84 ZN ZN A1322 1555 1555 2.57 LINK OE1 GLU A 84 ZN ZN A1322 1555 1555 2.09 LINK NE2 HIS A 170 FE HEM A 500 1555 1555 2.13 LINK OG SER A 171 CA CA A 401 1555 1555 2.49 LINK O SER A 171 CA CA A 401 1555 1555 2.38 LINK OD1 ASP A 188 CA CA A 401 1555 1555 2.71 LINK OD2 ASP A 188 CA CA A 401 1555 1555 2.42 LINK OG1 THR A 190 CA CA A 401 1555 1555 2.49 LINK O THR A 190 CA CA A 401 1555 1555 2.41 LINK O VAL A 193 CA CA A 401 1555 1555 2.42 LINK OD1 ASP A 195 CA CA A 401 1555 1555 2.43 LINK NE2 HIS A 233 ZN ZN A1321 4545 1555 2.00 LINK OD2 ASP A 238 ZN ZN A1320 1555 1555 1.95 LINK CA CA A 400 O HOH A2086 1555 1555 2.46 LINK CA CA A 400 O HOH A2094 1555 1555 2.32 LINK ZN ZN A1320 O HOH A2226 1555 1555 2.36 LINK ZN ZN A1320 O HOH A2320 1555 1555 1.94 LINK ZN ZN A1321 O HOH A2047 1555 1555 2.06 LINK ZN ZN A1322 O HOH A2064 1555 1555 2.59 LINK ZN ZN A1322 O HOH A2065 1555 1555 1.86 SITE 1 AC1 6 ASP A 49 GLY A 61 ASP A 63 SER A 65 SITE 2 AC1 6 HOH A2086 HOH A2094 SITE 1 AC2 5 SER A 171 ASP A 188 THR A 190 VAL A 193 SITE 2 AC2 5 ASP A 195 SITE 1 AC3 26 HIS A 40 GLU A 41 LEU A 43 ARG A 44 SITE 2 AC3 26 PHE A 47 PRO A 140 GLU A 141 PRO A 142 SITE 3 AC3 26 LEU A 166 LEU A 167 SER A 169 HIS A 170 SITE 4 AC3 26 ALA A 173 ALA A 174 ALA A 175 ASP A 176 SITE 5 AC3 26 LYS A 177 VAL A 178 PHE A 187 LEU A 229 SITE 6 AC3 26 SER A 231 HOH A2071 HOH A2072 HOH A2076 SITE 7 AC3 26 HOH A2077 HOH A2251 SITE 1 AC4 4 GLU A 27 ASP A 238 HOH A2226 HOH A2320 SITE 1 AC5 4 ASP A 31 GLU A 38 HIS A 233 HOH A2047 SITE 1 AC6 5 GLU A 37 GLU A 41 GLU A 84 HOH A2064 SITE 2 AC6 5 HOH A2065 CRYST1 62.900 62.900 99.170 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010084 0.00000