HEADER HYDROLASE 04-MAY-13 4BLS TITLE P4 PROTEIN FROM BACTERIOPHAGE PHI12 Q278A MUTANT IN COMPLEX WITH TITLE 2 AMPCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NTPASE P4; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PHI12; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE PHI12; SOURCE 4 ORGANISM_TAXID: 161736; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, PACKAGING, CYSTOVIRIDAE EXPDTA X-RAY DIFFRACTION AUTHOR K.EL OMARI,C.MEIER,D.KAINOV,G.SUTTON,J.M.GRIMES,M.M.PORANEN, AUTHOR 2 D.H.BAMFORD,R.TUMA,D.I.STUART,E.J.MANCINI REVDAT 3 20-DEC-23 4BLS 1 REMARK REVDAT 2 13-NOV-13 4BLS 1 JRNL REVDAT 1 21-AUG-13 4BLS 0 JRNL AUTH K.EL OMARI,C.MEIER,D.KAINOV,G.SUTTON,J.M.GRIMES,M.M.PORANEN, JRNL AUTH 2 D.H.BAMFORD,R.TUMA,D.I.STUART,E.J.MANCINI JRNL TITL TRACKING IN ATOMIC DETAIL THE FUNCTIONAL SPECIALIZATIONS IN JRNL TITL 2 VIRAL RECA HELICASES THAT OCCUR DURING EVOLUTION. JRNL REF NUCLEIC ACIDS RES. V. 41 9396 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23939620 JRNL DOI 10.1093/NAR/GKT713 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 30284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.257 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2206 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6855 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.95000 REMARK 3 B22 (A**2) : 11.43000 REMARK 3 B33 (A**2) : -4.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.358 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.270 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.229 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7061 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6725 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9576 ; 1.024 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15425 ; 0.783 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 897 ; 5.325 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 296 ;32.218 ;24.189 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1169 ;15.140 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ; 9.726 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1113 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7957 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1577 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3618 ; 1.487 ; 4.180 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3617 ; 1.486 ; 4.178 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4505 ; 2.634 ; 6.252 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3441 ; 1.302 ; 4.378 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 325 B 1 325 17466 0.05 0.05 REMARK 3 2 A 1 326 C 1 326 17463 0.06 0.05 REMARK 3 3 B 1 327 C 1 327 17545 0.06 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): 76.5716 40.6670 20.4942 REMARK 3 T TENSOR REMARK 3 T11: 0.1996 T22: 0.0444 REMARK 3 T33: 0.1966 T12: 0.0241 REMARK 3 T13: -0.0195 T23: 0.0615 REMARK 3 L TENSOR REMARK 3 L11: 0.9952 L22: 0.7517 REMARK 3 L33: 0.4694 L12: 0.1835 REMARK 3 L13: -0.2830 L23: 0.4752 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.0762 S13: 0.0413 REMARK 3 S21: -0.0633 S22: 0.0696 S23: -0.0303 REMARK 3 S31: -0.0458 S32: 0.0143 S33: -0.0564 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 327 REMARK 3 ORIGIN FOR THE GROUP (A): 46.9959 40.7168 30.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.0409 REMARK 3 T33: 0.1832 T12: -0.0058 REMARK 3 T13: 0.0169 T23: 0.0721 REMARK 3 L TENSOR REMARK 3 L11: 1.0368 L22: 0.4586 REMARK 3 L33: 0.5761 L12: -0.3642 REMARK 3 L13: 0.2792 L23: 0.3079 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: -0.0089 S13: 0.0330 REMARK 3 S21: -0.0143 S22: 0.0395 S23: -0.0488 REMARK 3 S31: -0.0158 S32: 0.0497 S33: -0.0213 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 327 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2445 40.7383 10.3846 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.0547 REMARK 3 T33: 0.2036 T12: -0.0214 REMARK 3 T13: 0.0024 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.3717 L22: 0.5381 REMARK 3 L33: 1.3198 L12: -0.3968 REMARK 3 L13: -0.1688 L23: -0.1544 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0265 S13: -0.0157 REMARK 3 S21: 0.0426 S22: 0.0048 S23: -0.0364 REMARK 3 S31: -0.0776 S32: 0.0017 S33: -0.0089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BLS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9756 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 7.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1W44 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 1500 IN 100 MM SODIUM ACETATE REMARK 280 PH 4.8, AND 5MM AMCPP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.81550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.16400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.96900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.81550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.16400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.96900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.81550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.16400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.96900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.81550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.16400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.96900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 105.63100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 196 REMARK 465 ALA A 197 REMARK 465 ALA A 198 REMARK 465 GLY A 199 REMARK 465 GLY A 200 REMARK 465 ASN A 201 REMARK 465 THR A 202 REMARK 465 THR A 203 REMARK 465 SER A 204 REMARK 465 GLY A 205 REMARK 465 GLY A 206 REMARK 465 LYS A 300 REMARK 465 GLN A 301 REMARK 465 SER A 302 REMARK 465 GLY A 303 REMARK 465 GLY A 304 REMARK 465 LYS A 305 REMARK 465 GLN A 306 REMARK 465 ALA A 307 REMARK 465 SER A 308 REMARK 465 GLY A 309 REMARK 465 LYS A 310 REMARK 465 ALA A 311 REMARK 465 ILE A 312 REMARK 465 ARG A 327 REMARK 465 LEU A 328 REMARK 465 THR A 329 REMARK 465 SER A 330 REMARK 465 ASN A 331 REMARK 465 GLY B 196 REMARK 465 ALA B 197 REMARK 465 ALA B 198 REMARK 465 GLY B 199 REMARK 465 GLY B 200 REMARK 465 ASN B 201 REMARK 465 THR B 202 REMARK 465 THR B 203 REMARK 465 SER B 204 REMARK 465 GLY B 205 REMARK 465 GLY B 206 REMARK 465 LYS B 300 REMARK 465 GLN B 301 REMARK 465 SER B 302 REMARK 465 GLY B 303 REMARK 465 GLY B 304 REMARK 465 LYS B 305 REMARK 465 GLN B 306 REMARK 465 ALA B 307 REMARK 465 SER B 308 REMARK 465 GLY B 309 REMARK 465 LYS B 310 REMARK 465 ALA B 311 REMARK 465 ILE B 312 REMARK 465 LEU B 328 REMARK 465 THR B 329 REMARK 465 SER B 330 REMARK 465 ASN B 331 REMARK 465 GLY C 196 REMARK 465 ALA C 197 REMARK 465 ALA C 198 REMARK 465 GLY C 199 REMARK 465 GLY C 200 REMARK 465 ASN C 201 REMARK 465 THR C 202 REMARK 465 THR C 203 REMARK 465 SER C 204 REMARK 465 GLY C 205 REMARK 465 GLY C 206 REMARK 465 THR C 236 REMARK 465 LYS C 300 REMARK 465 GLN C 301 REMARK 465 SER C 302 REMARK 465 GLY C 303 REMARK 465 GLY C 304 REMARK 465 LYS C 305 REMARK 465 GLN C 306 REMARK 465 ALA C 307 REMARK 465 SER C 308 REMARK 465 GLY C 309 REMARK 465 LYS C 310 REMARK 465 ALA C 311 REMARK 465 ILE C 312 REMARK 465 LEU C 328 REMARK 465 THR C 329 REMARK 465 SER C 330 REMARK 465 ASN C 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 174.34 -58.72 REMARK 500 GLU A 275 108.81 -53.74 REMARK 500 ASP B 55 174.21 -58.52 REMARK 500 GLU B 275 108.85 -53.75 REMARK 500 ASP C 55 174.43 -58.69 REMARK 500 GLU C 275 108.80 -53.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC C 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BLO RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI6 IN COMPLEX WITH ADP REMARK 900 RELATED ID: 4BLP RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI13 REMARK 900 RELATED ID: 4BLQ RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI8 REMARK 900 RELATED ID: 4BLR RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI12 IN COMPLEX WITH UTP REMARK 900 RELATED ID: 4BLT RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI12 S292A MUTANT IN COMPLEX WITH REMARK 900 AMPCPP REMARK 900 RELATED ID: 4BWY RELATED DB: PDB REMARK 900 P4 PROTEIN FROM BACTERIOPHAGE PHI8 (R32) DBREF 4BLS A 1 331 UNP Q94M05 Q94M05_9VIRU 1 331 DBREF 4BLS B 1 331 UNP Q94M05 Q94M05_9VIRU 1 331 DBREF 4BLS C 1 331 UNP Q94M05 Q94M05_9VIRU 1 331 SEQADV 4BLS ALA A 278 UNP Q94M05 GLN 278 ENGINEERED MUTATION SEQADV 4BLS ALA B 278 UNP Q94M05 GLN 278 ENGINEERED MUTATION SEQADV 4BLS ALA C 278 UNP Q94M05 GLN 278 ENGINEERED MUTATION SEQRES 1 A 331 MET ILE HIS LEU TYR ASP ALA LYS SER PHE ALA LYS LEU SEQRES 2 A 331 ARG ALA ALA GLN TYR ALA ALA PHE HIS THR ASP ALA PRO SEQRES 3 A 331 GLY SER TRP PHE ASP HIS THR SER GLY VAL LEU GLU SER SEQRES 4 A 331 VAL GLU ASP GLY THR PRO VAL LEU ALA ILE GLY VAL GLU SEQRES 5 A 331 SER GLY ASP ALA ILE VAL PHE ASP LYS ASN ALA GLN ARG SEQRES 6 A 331 ILE VAL ALA TYR LYS GLU LYS SER VAL LYS ALA GLU ASP SEQRES 7 A 331 GLY SER VAL SER VAL VAL GLN VAL GLU ASN GLY PHE MET SEQRES 8 A 331 LYS GLN GLY HIS ARG GLY TRP LEU VAL ASP LEU THR GLY SEQRES 9 A 331 GLU LEU VAL GLY CYS SER PRO VAL VAL ALA GLU PHE GLY SEQRES 10 A 331 GLY HIS ARG TYR ALA SER GLY MET VAL ILE VAL THR GLY SEQRES 11 A 331 LYS GLY ASN SER GLY LYS THR PRO LEU VAL HIS ALA LEU SEQRES 12 A 331 GLY GLU ALA LEU GLY GLY LYS ASP LYS TYR ALA THR VAL SEQRES 13 A 331 ARG PHE GLY GLU PRO LEU SER GLY TYR ASN THR ASP PHE SEQRES 14 A 331 ASN VAL PHE VAL ASP ASP ILE ALA ARG ALA MET LEU GLN SEQRES 15 A 331 HIS ARG VAL ILE VAL ILE ASP SER LEU LYS ASN VAL ILE SEQRES 16 A 331 GLY ALA ALA GLY GLY ASN THR THR SER GLY GLY ILE SER SEQRES 17 A 331 ARG GLY ALA PHE ASP LEU LEU SER ASP ILE GLY ALA MET SEQRES 18 A 331 ALA ALA SER ARG GLY CYS VAL VAL ILE ALA SER LEU ASN SEQRES 19 A 331 PRO THR SER ASN ASP ASP LYS ILE VAL GLU LEU VAL LYS SEQRES 20 A 331 GLU ALA SER ARG SER ASN SER THR SER LEU VAL ILE SER SEQRES 21 A 331 THR ASP VAL ASP GLY GLU TRP GLN VAL LEU THR ARG THR SEQRES 22 A 331 GLY GLU GLY LEU ALA ARG LEU THR HIS THR LEU GLN THR SEQRES 23 A 331 SER TYR GLY GLU HIS SER VAL LEU THR ILE HIS THR SER SEQRES 24 A 331 LYS GLN SER GLY GLY LYS GLN ALA SER GLY LYS ALA ILE SEQRES 25 A 331 GLN THR VAL ILE LYS ASN ASP GLU LEU GLU SER VAL LEU SEQRES 26 A 331 ARG ARG LEU THR SER ASN SEQRES 1 B 331 MET ILE HIS LEU TYR ASP ALA LYS SER PHE ALA LYS LEU SEQRES 2 B 331 ARG ALA ALA GLN TYR ALA ALA PHE HIS THR ASP ALA PRO SEQRES 3 B 331 GLY SER TRP PHE ASP HIS THR SER GLY VAL LEU GLU SER SEQRES 4 B 331 VAL GLU ASP GLY THR PRO VAL LEU ALA ILE GLY VAL GLU SEQRES 5 B 331 SER GLY ASP ALA ILE VAL PHE ASP LYS ASN ALA GLN ARG SEQRES 6 B 331 ILE VAL ALA TYR LYS GLU LYS SER VAL LYS ALA GLU ASP SEQRES 7 B 331 GLY SER VAL SER VAL VAL GLN VAL GLU ASN GLY PHE MET SEQRES 8 B 331 LYS GLN GLY HIS ARG GLY TRP LEU VAL ASP LEU THR GLY SEQRES 9 B 331 GLU LEU VAL GLY CYS SER PRO VAL VAL ALA GLU PHE GLY SEQRES 10 B 331 GLY HIS ARG TYR ALA SER GLY MET VAL ILE VAL THR GLY SEQRES 11 B 331 LYS GLY ASN SER GLY LYS THR PRO LEU VAL HIS ALA LEU SEQRES 12 B 331 GLY GLU ALA LEU GLY GLY LYS ASP LYS TYR ALA THR VAL SEQRES 13 B 331 ARG PHE GLY GLU PRO LEU SER GLY TYR ASN THR ASP PHE SEQRES 14 B 331 ASN VAL PHE VAL ASP ASP ILE ALA ARG ALA MET LEU GLN SEQRES 15 B 331 HIS ARG VAL ILE VAL ILE ASP SER LEU LYS ASN VAL ILE SEQRES 16 B 331 GLY ALA ALA GLY GLY ASN THR THR SER GLY GLY ILE SER SEQRES 17 B 331 ARG GLY ALA PHE ASP LEU LEU SER ASP ILE GLY ALA MET SEQRES 18 B 331 ALA ALA SER ARG GLY CYS VAL VAL ILE ALA SER LEU ASN SEQRES 19 B 331 PRO THR SER ASN ASP ASP LYS ILE VAL GLU LEU VAL LYS SEQRES 20 B 331 GLU ALA SER ARG SER ASN SER THR SER LEU VAL ILE SER SEQRES 21 B 331 THR ASP VAL ASP GLY GLU TRP GLN VAL LEU THR ARG THR SEQRES 22 B 331 GLY GLU GLY LEU ALA ARG LEU THR HIS THR LEU GLN THR SEQRES 23 B 331 SER TYR GLY GLU HIS SER VAL LEU THR ILE HIS THR SER SEQRES 24 B 331 LYS GLN SER GLY GLY LYS GLN ALA SER GLY LYS ALA ILE SEQRES 25 B 331 GLN THR VAL ILE LYS ASN ASP GLU LEU GLU SER VAL LEU SEQRES 26 B 331 ARG ARG LEU THR SER ASN SEQRES 1 C 331 MET ILE HIS LEU TYR ASP ALA LYS SER PHE ALA LYS LEU SEQRES 2 C 331 ARG ALA ALA GLN TYR ALA ALA PHE HIS THR ASP ALA PRO SEQRES 3 C 331 GLY SER TRP PHE ASP HIS THR SER GLY VAL LEU GLU SER SEQRES 4 C 331 VAL GLU ASP GLY THR PRO VAL LEU ALA ILE GLY VAL GLU SEQRES 5 C 331 SER GLY ASP ALA ILE VAL PHE ASP LYS ASN ALA GLN ARG SEQRES 6 C 331 ILE VAL ALA TYR LYS GLU LYS SER VAL LYS ALA GLU ASP SEQRES 7 C 331 GLY SER VAL SER VAL VAL GLN VAL GLU ASN GLY PHE MET SEQRES 8 C 331 LYS GLN GLY HIS ARG GLY TRP LEU VAL ASP LEU THR GLY SEQRES 9 C 331 GLU LEU VAL GLY CYS SER PRO VAL VAL ALA GLU PHE GLY SEQRES 10 C 331 GLY HIS ARG TYR ALA SER GLY MET VAL ILE VAL THR GLY SEQRES 11 C 331 LYS GLY ASN SER GLY LYS THR PRO LEU VAL HIS ALA LEU SEQRES 12 C 331 GLY GLU ALA LEU GLY GLY LYS ASP LYS TYR ALA THR VAL SEQRES 13 C 331 ARG PHE GLY GLU PRO LEU SER GLY TYR ASN THR ASP PHE SEQRES 14 C 331 ASN VAL PHE VAL ASP ASP ILE ALA ARG ALA MET LEU GLN SEQRES 15 C 331 HIS ARG VAL ILE VAL ILE ASP SER LEU LYS ASN VAL ILE SEQRES 16 C 331 GLY ALA ALA GLY GLY ASN THR THR SER GLY GLY ILE SER SEQRES 17 C 331 ARG GLY ALA PHE ASP LEU LEU SER ASP ILE GLY ALA MET SEQRES 18 C 331 ALA ALA SER ARG GLY CYS VAL VAL ILE ALA SER LEU ASN SEQRES 19 C 331 PRO THR SER ASN ASP ASP LYS ILE VAL GLU LEU VAL LYS SEQRES 20 C 331 GLU ALA SER ARG SER ASN SER THR SER LEU VAL ILE SER SEQRES 21 C 331 THR ASP VAL ASP GLY GLU TRP GLN VAL LEU THR ARG THR SEQRES 22 C 331 GLY GLU GLY LEU ALA ARG LEU THR HIS THR LEU GLN THR SEQRES 23 C 331 SER TYR GLY GLU HIS SER VAL LEU THR ILE HIS THR SER SEQRES 24 C 331 LYS GLN SER GLY GLY LYS GLN ALA SER GLY LYS ALA ILE SEQRES 25 C 331 GLN THR VAL ILE LYS ASN ASP GLU LEU GLU SER VAL LEU SEQRES 26 C 331 ARG ARG LEU THR SER ASN HET APC A 400 31 HET APC B 400 31 HET APC C 400 31 HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 4 APC 3(C11 H18 N5 O12 P3) HELIX 1 1 ASP A 6 THR A 23 1 18 HELIX 2 2 GLY A 27 VAL A 40 1 14 HELIX 3 3 GLY A 135 GLY A 149 1 15 HELIX 4 4 ASP A 168 HIS A 183 1 16 HELIX 5 5 SER A 208 GLY A 226 1 19 HELIX 6 6 ASP A 239 SER A 252 1 14 HELIX 7 7 GLU A 290 SER A 292 5 3 HELIX 8 8 LYS A 317 LEU A 325 1 9 HELIX 9 9 ASP B 6 THR B 23 1 18 HELIX 10 10 GLY B 27 VAL B 40 1 14 HELIX 11 11 GLY B 135 GLY B 149 1 15 HELIX 12 12 ASP B 168 HIS B 183 1 16 HELIX 13 13 SER B 208 GLY B 226 1 19 HELIX 14 14 ASP B 239 SER B 252 1 14 HELIX 15 15 GLU B 290 SER B 292 5 3 HELIX 16 16 LYS B 317 LEU B 325 1 9 HELIX 17 17 ASP C 6 THR C 23 1 18 HELIX 18 18 GLY C 27 VAL C 40 1 14 HELIX 19 19 GLY C 135 GLY C 149 1 15 HELIX 20 20 ASP C 168 HIS C 183 1 16 HELIX 21 21 SER C 208 GLY C 226 1 19 HELIX 22 22 ASP C 239 SER C 252 1 14 HELIX 23 23 GLU C 290 SER C 292 5 3 HELIX 24 24 LYS C 317 LEU C 325 1 9 SHEET 1 AA 9 HIS A 3 TYR A 5 0 SHEET 2 AA 9 TYR B 153 ARG B 157 -1 O TYR B 153 N TYR A 5 SHEET 3 AA 9 VAL B 185 ASP B 189 1 O VAL B 185 N ALA B 154 SHEET 4 AA 9 VAL B 228 SER B 232 1 O VAL B 228 N ILE B 186 SHEET 5 AA 9 GLY B 124 THR B 129 1 O GLY B 124 N VAL B 229 SHEET 6 AA 9 SER B 256 SER B 260 1 O SER B 256 N ILE B 127 SHEET 7 AA 9 TRP B 267 ARG B 272 -1 O GLN B 268 N ILE B 259 SHEET 8 AA 9 ARG B 279 LEU B 284 -1 O LEU B 280 N THR B 271 SHEET 9 AA 9 THR B 314 ILE B 316 -1 O THR B 314 N THR B 281 SHEET 1 AB 3 ALA A 56 PHE A 59 0 SHEET 2 AB 3 LEU A 47 GLY A 50 -1 O LEU A 47 N PHE A 59 SHEET 3 AB 3 GLY A 97 TRP A 98 -1 O GLY A 97 N ALA A 48 SHEET 1 AC 3 TYR A 69 LYS A 75 0 SHEET 2 AC 3 VAL A 81 GLU A 87 -1 O SER A 82 N VAL A 74 SHEET 3 AC 3 PHE A 90 GLN A 93 -1 O PHE A 90 N GLU A 87 SHEET 1 AD 2 VAL A 112 PHE A 116 0 SHEET 2 AD 2 HIS A 119 ALA A 122 -1 O HIS A 119 N PHE A 116 SHEET 1 AE 8 ALA A 154 ARG A 157 0 SHEET 2 AE 8 VAL A 185 ASP A 189 1 O VAL A 185 N ALA A 154 SHEET 3 AE 8 VAL A 228 SER A 232 1 O VAL A 228 N ILE A 186 SHEET 4 AE 8 GLY A 124 THR A 129 1 O GLY A 124 N VAL A 229 SHEET 5 AE 8 SER A 256 SER A 260 1 O SER A 256 N ILE A 127 SHEET 6 AE 8 TRP A 267 ARG A 272 -1 O GLN A 268 N ILE A 259 SHEET 7 AE 8 ARG A 279 LEU A 284 -1 O LEU A 280 N THR A 271 SHEET 8 AE 8 THR A 314 ILE A 316 -1 O THR A 314 N THR A 281 SHEET 1 AF 2 THR A 286 TYR A 288 0 SHEET 2 AF 2 LEU A 294 ILE A 296 -1 O THR A 295 N SER A 287 SHEET 1 BA 9 HIS B 3 TYR B 5 0 SHEET 2 BA 9 TYR C 153 ARG C 157 -1 O TYR C 153 N TYR B 5 SHEET 3 BA 9 VAL C 185 ASP C 189 1 O VAL C 185 N ALA C 154 SHEET 4 BA 9 VAL C 228 SER C 232 1 O VAL C 228 N ILE C 186 SHEET 5 BA 9 GLY C 124 THR C 129 1 O GLY C 124 N VAL C 229 SHEET 6 BA 9 SER C 256 SER C 260 1 O SER C 256 N ILE C 127 SHEET 7 BA 9 TRP C 267 ARG C 272 -1 O GLN C 268 N ILE C 259 SHEET 8 BA 9 ARG C 279 LEU C 284 -1 O LEU C 280 N THR C 271 SHEET 9 BA 9 THR C 314 ILE C 316 -1 O THR C 314 N THR C 281 SHEET 1 BB 3 ALA B 56 PHE B 59 0 SHEET 2 BB 3 LEU B 47 GLY B 50 -1 O LEU B 47 N PHE B 59 SHEET 3 BB 3 GLY B 97 TRP B 98 -1 O GLY B 97 N ALA B 48 SHEET 1 BC 3 TYR B 69 LYS B 75 0 SHEET 2 BC 3 VAL B 81 GLU B 87 -1 O SER B 82 N VAL B 74 SHEET 3 BC 3 PHE B 90 GLN B 93 -1 O PHE B 90 N GLU B 87 SHEET 1 BD 2 VAL B 112 PHE B 116 0 SHEET 2 BD 2 HIS B 119 ALA B 122 -1 O HIS B 119 N PHE B 116 SHEET 1 BE 2 THR B 286 TYR B 288 0 SHEET 2 BE 2 LEU B 294 ILE B 296 -1 O THR B 295 N SER B 287 SHEET 1 CA 3 ALA C 56 PHE C 59 0 SHEET 2 CA 3 LEU C 47 GLY C 50 -1 O LEU C 47 N PHE C 59 SHEET 3 CA 3 GLY C 97 TRP C 98 -1 O GLY C 97 N ALA C 48 SHEET 1 CB 3 TYR C 69 LYS C 75 0 SHEET 2 CB 3 VAL C 81 GLU C 87 -1 O SER C 82 N VAL C 74 SHEET 3 CB 3 PHE C 90 GLN C 93 -1 O PHE C 90 N GLU C 87 SHEET 1 CC 2 VAL C 112 PHE C 116 0 SHEET 2 CC 2 HIS C 119 ALA C 122 -1 O HIS C 119 N PHE C 116 SHEET 1 CD 2 THR C 286 TYR C 288 0 SHEET 2 CD 2 LEU C 294 ILE C 296 -1 O THR C 295 N SER C 287 CISPEP 1 ASP A 189 SER A 190 0 0.80 CISPEP 2 ASP B 189 SER B 190 0 0.98 CISPEP 3 ASP C 189 SER C 190 0 -10.58 SITE 1 AC1 13 ASN A 133 GLY A 135 LYS A 136 THR A 137 SITE 2 AC1 13 GLU A 160 LYS A 192 ASN A 234 TYR A 288 SITE 3 AC1 13 SER A 292 SER C 252 ARG C 272 GLY C 276 SITE 4 AC1 13 ASN C 318 SITE 1 AC2 15 SER A 252 ARG A 272 GLY A 276 ARG A 279 SITE 2 AC2 15 ASN A 318 ASN B 133 GLY B 135 LYS B 136 SITE 3 AC2 15 THR B 137 PRO B 138 GLU B 160 LYS B 192 SITE 4 AC2 15 ASN B 234 TYR B 288 SER B 292 SITE 1 AC3 11 SER B 252 ARG B 272 GLY B 276 ASN B 318 SITE 2 AC3 11 GLY C 135 LYS C 136 THR C 137 GLU C 160 SITE 3 AC3 11 ASN C 234 TYR C 288 SER C 292 CRYST1 105.631 132.328 159.938 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009467 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006252 0.00000