HEADER OXIDOREDUCTASE 05-MAY-13 4BM4 TITLE CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - TITLE 2 CRYSTAL FORM IV COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGANESE PEROXIDASE 4; COMPND 3 CHAIN: A; COMPND 4 EC: 1.11.1.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLEUROTUS OSTREATUS; SOURCE 3 ORGANISM_COMMON: OYSTER MUSHROOM; SOURCE 4 ORGANISM_TAXID: 5322; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: W3110 KEYWDS OXIDOREDUCTASE, CLASS II (FUNGAL) PEROXIDASES, ELECTRON T LIGNIN KEYWDS 2 PEROXIDASE, LIGNIN DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR F.J.MEDRANO,A.ROMERO REVDAT 2 20-DEC-23 4BM4 1 JRNL REMARK LINK REVDAT 1 15-JAN-14 4BM4 0 JRNL AUTH E.FERNANDEZ-FUEYO,F.J.RUIZ-DUENAS,M.J.MARTINEZ,A.ROMERO, JRNL AUTH 2 K.E.HAMMEL,F.J.MEDRANO,A.T.MARTINEZ JRNL TITL LIGNINOLYTIC PEROXIDASE GENES IN THE OYSTER MUSHROOM GENOME: JRNL TITL 2 HETEROLOGOUS EXPRESSION, MOLECULAR STRUCTURE, CATALYTIC AND JRNL TITL 3 STABILITY PROPERTIES, AND LIGNIN-DEGRADING ABILITY. JRNL REF BIOTECHNOL.BIOFUELS V. 7 2 2014 JRNL REFN ESSN 1754-6834 JRNL PMID 24387130 JRNL DOI 10.1186/1754-6834-7-2 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 18254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2576 - 4.3985 1.00 2549 143 0.1604 0.2067 REMARK 3 2 4.3985 - 3.4917 0.99 2491 135 0.1808 0.2712 REMARK 3 3 3.4917 - 3.0504 0.99 2492 128 0.2441 0.2995 REMARK 3 4 3.0504 - 2.7716 0.99 2457 129 0.2644 0.3707 REMARK 3 5 2.7716 - 2.5730 0.98 2476 134 0.3052 0.3503 REMARK 3 6 2.5730 - 2.4213 0.98 2439 130 0.3036 0.4526 REMARK 3 7 2.4213 - 2.3000 0.98 2423 128 0.3007 0.3509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 57.88 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.640 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.20140 REMARK 3 B22 (A**2) : 1.02250 REMARK 3 B33 (A**2) : -2.25990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.05420 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2648 REMARK 3 ANGLE : 1.251 3597 REMARK 3 CHIRALITY : 0.079 387 REMARK 3 PLANARITY : 0.005 478 REMARK 3 DIHEDRAL : 16.826 971 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:28) REMARK 3 ORIGIN FOR THE GROUP (A): 165.1973 -9.6337 19.2229 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 0.6883 REMARK 3 T33: 0.3507 T12: 0.0458 REMARK 3 T13: -0.0047 T23: 0.0942 REMARK 3 L TENSOR REMARK 3 L11: 0.1161 L22: 1.6370 REMARK 3 L33: 0.3224 L12: -0.0231 REMARK 3 L13: -0.1388 L23: 0.5328 REMARK 3 S TENSOR REMARK 3 S11: 0.2040 S12: 0.2600 S13: -0.1141 REMARK 3 S21: -0.0387 S22: -0.0040 S23: -0.6479 REMARK 3 S31: -0.0229 S32: 0.5099 S33: -0.0354 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 29:70) REMARK 3 ORIGIN FOR THE GROUP (A): 142.1795 -9.7126 17.7120 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.2050 REMARK 3 T33: 0.1809 T12: 0.0598 REMARK 3 T13: -0.0219 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.1457 L22: 1.6897 REMARK 3 L33: 1.3696 L12: 0.0045 REMARK 3 L13: 0.5712 L23: -0.2208 REMARK 3 S TENSOR REMARK 3 S11: -0.1285 S12: 0.1593 S13: -0.1939 REMARK 3 S21: -0.2240 S22: 0.1992 S23: 0.0416 REMARK 3 S31: 0.4041 S32: 0.0180 S33: -0.0636 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 71:101) REMARK 3 ORIGIN FOR THE GROUP (A): 143.9038 -18.4772 12.3749 REMARK 3 T TENSOR REMARK 3 T11: 0.1867 T22: 0.1436 REMARK 3 T33: 0.1216 T12: 0.0711 REMARK 3 T13: 0.0292 T23: -0.0921 REMARK 3 L TENSOR REMARK 3 L11: 1.9480 L22: 1.4389 REMARK 3 L33: 0.6662 L12: -0.1733 REMARK 3 L13: 0.2236 L23: -0.1633 REMARK 3 S TENSOR REMARK 3 S11: 0.1372 S12: 0.4538 S13: -0.2755 REMARK 3 S21: -0.6136 S22: -0.0385 S23: -0.1067 REMARK 3 S31: 0.1915 S32: 0.2798 S33: -0.0100 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 102:201) REMARK 3 ORIGIN FOR THE GROUP (A): 142.1589 -4.5729 15.0076 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.1336 REMARK 3 T33: 0.0647 T12: 0.0045 REMARK 3 T13: -0.0105 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 0.8290 L22: 1.3775 REMARK 3 L33: 0.6070 L12: -0.2842 REMARK 3 L13: 0.3595 L23: -0.6244 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: 0.1541 S13: -0.0562 REMARK 3 S21: -0.0090 S22: -0.0973 S23: -0.0296 REMARK 3 S31: 0.0253 S32: 0.2337 S33: 0.0136 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 202:235) REMARK 3 ORIGIN FOR THE GROUP (A): 132.7355 5.2901 0.8744 REMARK 3 T TENSOR REMARK 3 T11: 0.1386 T22: 0.4797 REMARK 3 T33: 0.1100 T12: -0.0112 REMARK 3 T13: 0.0080 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 1.5767 L22: 1.1280 REMARK 3 L33: 0.8831 L12: 0.7042 REMARK 3 L13: 0.7462 L23: 0.1479 REMARK 3 S TENSOR REMARK 3 S11: 0.0369 S12: 0.8062 S13: -0.0807 REMARK 3 S21: -0.0954 S22: 0.0004 S23: -0.1003 REMARK 3 S31: -0.0109 S32: 0.0066 S33: 0.0691 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 236:285) REMARK 3 ORIGIN FOR THE GROUP (A): 141.2643 4.4904 20.3010 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.3983 REMARK 3 T33: 0.1425 T12: -0.0437 REMARK 3 T13: -0.0667 T23: 0.0651 REMARK 3 L TENSOR REMARK 3 L11: 0.6813 L22: 1.1002 REMARK 3 L33: 0.0274 L12: -0.3577 REMARK 3 L13: 0.0715 L23: -0.0569 REMARK 3 S TENSOR REMARK 3 S11: -0.1119 S12: -0.0908 S13: 0.0333 REMARK 3 S21: 0.2775 S22: -0.0926 S23: -0.1022 REMARK 3 S31: -0.1674 S32: 0.2549 S33: 0.1190 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 286:303) REMARK 3 ORIGIN FOR THE GROUP (A): 153.4387 9.1139 11.2310 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.5801 REMARK 3 T33: 0.2928 T12: -0.0607 REMARK 3 T13: -0.0622 T23: 0.1845 REMARK 3 L TENSOR REMARK 3 L11: 0.4114 L22: 1.3737 REMARK 3 L33: 0.2566 L12: -0.6615 REMARK 3 L13: 0.2925 L23: -0.3479 REMARK 3 S TENSOR REMARK 3 S11: -0.0595 S12: 0.2387 S13: 0.1130 REMARK 3 S21: 0.0432 S22: -0.0785 S23: -0.3227 REMARK 3 S31: -0.2032 S32: 0.0515 S33: 0.0875 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 304:337) REMARK 3 ORIGIN FOR THE GROUP (A): 137.7869 15.8291 2.8097 REMARK 3 T TENSOR REMARK 3 T11: 0.2212 T22: 0.5167 REMARK 3 T33: 0.2744 T12: -0.0265 REMARK 3 T13: 0.0463 T23: 0.1896 REMARK 3 L TENSOR REMARK 3 L11: 0.4426 L22: 0.6401 REMARK 3 L33: 0.3402 L12: -0.1969 REMARK 3 L13: -0.0238 L23: 0.0931 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: 0.1928 S13: 0.2921 REMARK 3 S21: -0.1149 S22: -0.1297 S23: -0.4167 REMARK 3 S31: -0.0447 S32: 0.2028 S33: -0.0175 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18317 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3FMU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CAPS AT PH 10.5, 1.2 M REMARK 280 NAH2PO4/0.8 M K2HPO4 & 0.2 M LI2SO4. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.93500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.93500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 338 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 186 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 37.68 -99.12 REMARK 500 LEU A 29 -44.51 -166.87 REMARK 500 ASP A 31 70.63 47.27 REMARK 500 ALA A 68 64.32 -44.03 REMARK 500 HIS A 143 18.66 57.10 REMARK 500 PRO A 197 11.81 -63.86 REMARK 500 PHE A 200 73.94 -101.97 REMARK 500 VAL A 225 -160.54 -109.19 REMARK 500 ARG A 315 -113.28 88.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 314 ARG A 315 48.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2062 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD1 REMARK 620 2 ASP A 49 O 82.6 REMARK 620 3 GLY A 67 O 96.5 72.0 REMARK 620 4 ASP A 69 OD1 87.8 128.7 59.2 REMARK 620 5 SER A 71 OG 93.0 163.9 124.0 66.3 REMARK 620 6 HOH A2024 O 80.7 78.1 150.1 149.3 85.9 REMARK 620 7 HOH A2029 O 173.1 102.9 81.3 85.5 82.8 104.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 176 NE2 REMARK 620 2 HEM A 500 NA 100.5 REMARK 620 3 HEM A 500 NB 100.6 91.1 REMARK 620 4 HEM A 500 NC 95.2 164.0 83.1 REMARK 620 5 HEM A 500 ND 95.9 88.4 163.4 92.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 177 O REMARK 620 2 SER A 177 OG 86.6 REMARK 620 3 ASP A 194 OD2 100.5 80.6 REMARK 620 4 ASP A 194 OD1 59.6 93.0 43.5 REMARK 620 5 THR A 196 O 78.9 162.2 112.0 88.7 REMARK 620 6 THR A 196 OG1 129.9 139.6 76.7 93.0 57.8 REMARK 620 7 ASP A 199 O 77.1 97.2 176.9 134.8 69.7 106.4 REMARK 620 8 ASP A 201 OD1 167.4 80.9 75.9 119.1 113.7 61.5 106.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BLK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM I REMARK 900 RELATED ID: 4BLL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM II REMARK 900 RELATED ID: 4BLN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM III REMARK 900 RELATED ID: 4BLX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM IV REMARK 900 RELATED ID: 4BLY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM V REMARK 900 RELATED ID: 4BLZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM VI REMARK 900 RELATED ID: 4BM0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FUNGAL VERSATILE PEROXIDASE I FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM VII REMARK 900 RELATED ID: 4BM1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM I REMARK 900 RELATED ID: 4BM2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM II REMARK 900 RELATED ID: 4BM3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS REMARK 900 OSTREATUS - CRYSTAL FORM III DBREF 4BM4 A 1 338 PDB 4BM4 4BM4 1 338 SEQRES 1 A 338 MET ALA LYS CYS SER LYS GLY ARG THR ALA SER ASN ASP SEQRES 2 A 338 ALA CYS CYS VAL TRP PHE ASP VAL LEU ASP ASP ILE GLN SEQRES 3 A 338 GLU ASN LEU PHE ASP GLY GLY GLU CYS GLY GLU GLU VAL SEQRES 4 A 338 HIS GLU SER LEU ARG LEU THR PHE HIS ASP ALA ILE GLY SEQRES 5 A 338 PHE SER PRO ALA LEU THR ARG GLN GLY LYS PHE GLY GLY SEQRES 6 A 338 GLY GLY ALA ASP GLY SER ILE MET LEU PHE SER ASP ILE SEQRES 7 A 338 GLU THR ASN PHE ALA ALA ASN ASN GLY VAL ASP ASP ILE SEQRES 8 A 338 VAL GLU GLN GLN LYS PRO ILE ALA ILE LYS HIS GLN VAL SEQRES 9 A 338 SER PHE GLY ASP PHE ILE GLN PHE ALA GLY ALA VAL GLY SEQRES 10 A 338 SER SER ASN CYS ALA GLY GLY PRO ARG ILE GLN PHE LEU SEQRES 11 A 338 ALA GLY ARG SER ASN VAL THR LYS PRO SER PRO ASP HIS SEQRES 12 A 338 LEU VAL PRO GLU PRO PHE ASP SER VAL THR SER ILE LEU SEQRES 13 A 338 ALA ARG MET GLY ASP ALA GLY PHE LYS PRO ASP GLU VAL SEQRES 14 A 338 VAL ALA LEU LEU ALA SER HIS SER VAL ALA ALA GLN ASP SEQRES 15 A 338 THR ILE ASP PRO LYS LEU ALA GLY HIS PRO PHE ASP SER SEQRES 16 A 338 THR PRO SER ASP PHE ASP SER GLN PHE PHE VAL GLU THR SEQRES 17 A 338 LEU LEU LYS GLY THR LEU ILE PRO GLY ASP SER LEU HIS SEQRES 18 A 338 LYS GLY GLN VAL LYS SER PRO LEU PRO GLY GLU PHE ARG SEQRES 19 A 338 LEU GLN SER ASP GLU LEU LEU ALA ARG ASP SER ARG THR SEQRES 20 A 338 SER CYS GLU TRP GLN SER PHE ILE SER ASN PRO ASN SER SEQRES 21 A 338 MET VAL PRO LYS PHE GLU ARG ALA MET ALA LYS MET ALA SEQRES 22 A 338 THR LEU GLY GLN ASN PRO LYS LYS LEU ILE ASP CYS SER SEQRES 23 A 338 GLU VAL ILE PRO VAL PRO ARG GLY ARG VAL LYS GLN PRO SEQRES 24 A 338 THR LEU PRO ALA GLY LYS THR ILE LYS ASP ILE GLU ALA SEQRES 25 A 338 SER CYS ARG LYS ALA PRO PHE PRO ARG LEU PRO THR ASP SEQRES 26 A 338 LYS GLY THR PHE THR SER ILE LEU PRO VAL PRO SER SER HET CA A 401 1 HET CA A 402 1 HET HEM A 500 43 HETNAM CA CALCIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 CA 2(CA 2+) FORMUL 4 HEM C34 H32 FE N4 O4 FORMUL 5 HOH *207(H2 O) HELIX 1 1 ASN A 12 ALA A 14 5 3 HELIX 2 2 CYS A 15 LEU A 29 1 15 HELIX 3 3 GLY A 36 ILE A 51 1 16 HELIX 4 4 SER A 54 ARG A 59 1 6 HELIX 5 5 GLY A 70 PHE A 75 1 6 HELIX 6 6 PHE A 75 THR A 80 1 6 HELIX 7 7 ASN A 81 ASN A 86 5 6 HELIX 8 8 VAL A 88 HIS A 102 1 15 HELIX 9 9 SER A 105 ASN A 120 1 16 HELIX 10 10 SER A 151 GLY A 163 1 13 HELIX 11 11 LYS A 165 LEU A 173 1 9 HELIX 12 12 ALA A 174 ALA A 179 5 6 HELIX 13 13 ASP A 185 ALA A 189 5 5 HELIX 14 14 SER A 202 THR A 208 1 7 HELIX 15 15 LEU A 235 ASP A 244 1 10 HELIX 16 16 THR A 247 ASN A 257 1 11 HELIX 17 17 SER A 260 ALA A 273 1 14 HELIX 18 18 ASN A 278 LEU A 282 5 5 HELIX 19 19 SER A 286 ILE A 289 5 4 HELIX 20 20 THR A 306 ASP A 309 5 4 SHEET 1 AA 2 LYS A 3 CYS A 4 0 SHEET 2 AA 2 ARG A 8 THR A 9 -1 O ARG A 8 N CYS A 4 SHEET 1 AB 2 LEU A 130 ALA A 131 0 SHEET 2 AB 2 ILE A 283 ASP A 284 -1 O ILE A 283 N ALA A 131 SSBOND 1 CYS A 4 CYS A 16 1555 1555 2.05 SSBOND 2 CYS A 15 CYS A 285 1555 1555 2.06 SSBOND 3 CYS A 35 CYS A 121 1555 1555 2.04 SSBOND 4 CYS A 249 CYS A 314 1555 1555 2.03 LINK OD1 ASP A 49 CA CA A 401 1555 1555 2.92 LINK O ASP A 49 CA CA A 401 1555 1555 2.73 LINK O GLY A 67 CA CA A 401 1555 1555 3.02 LINK OD1 ASP A 69 CA CA A 401 1555 1555 2.91 LINK OG SER A 71 CA CA A 401 1555 1555 2.78 LINK NE2 HIS A 176 FE HEM A 500 1555 1555 2.35 LINK O SER A 177 CA CA A 402 1555 1555 2.66 LINK OG SER A 177 CA CA A 402 1555 1555 2.82 LINK OD2 ASP A 194 CA CA A 402 1555 1555 2.89 LINK OD1 ASP A 194 CA CA A 402 1555 1555 3.05 LINK O THR A 196 CA CA A 402 1555 1555 2.78 LINK OG1 THR A 196 CA CA A 402 1555 1555 2.85 LINK O ASP A 199 CA CA A 402 1555 1555 2.84 LINK OD1 ASP A 201 CA CA A 402 1555 1555 2.72 LINK CA CA A 401 O HOH A2024 1555 1555 2.83 LINK CA CA A 401 O HOH A2029 1555 1555 2.91 SITE 1 AC1 6 ASP A 49 GLY A 67 ASP A 69 SER A 71 SITE 2 AC1 6 HOH A2024 HOH A2029 SITE 1 AC2 5 SER A 177 ASP A 194 THR A 196 ASP A 199 SITE 2 AC2 5 ASP A 201 SITE 1 AC3 27 HIS A 40 GLU A 41 LEU A 43 ARG A 44 SITE 2 AC3 27 PHE A 47 PRO A 146 GLU A 147 PRO A 148 SITE 3 AC3 27 LEU A 172 LEU A 173 SER A 175 HIS A 176 SITE 4 AC3 27 ALA A 179 ALA A 180 GLN A 181 ASP A 182 SITE 5 AC3 27 THR A 183 ILE A 184 PHE A 193 LEU A 235 SITE 6 AC3 27 MET A 269 HOH A2021 HOH A2022 HOH A2025 SITE 7 AC3 27 HOH A2109 HOH A2142 HOH A2204 CRYST1 123.870 86.500 41.400 90.00 108.05 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008073 0.000000 0.002631 0.00000 SCALE2 0.000000 0.011561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025405 0.00000