HEADER PROTEIN TRANSPORT 06-MAY-13 4BM5 TITLE CHLOROPLAST INNER MEMBRANE PROTEIN TIC110 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIMILAR TO CHLOROPLAST INNER MEMBRANE PROTEIN TIC110; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 871-1218; COMPND 5 SYNONYM: CMC; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYANIDIOSCHYZON MEROLAE; SOURCE 3 ORGANISM_TAXID: 45157; SOURCE 4 STRAIN: 10D; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.-Y.TSAI,C.-C.CHU,Y.-H.YEH,L.-J.CHEN,H.-M.LI,C.-D.HSIAO REVDAT 2 25-SEP-13 4BM5 1 JRNL REVDAT 1 12-JUN-13 4BM5 0 JRNL AUTH J.-Y.TSAI,C.-C.CHU,Y.-H.YEH,L.-J.CHEN,H.-M.LI,C.-D.HSIAO JRNL TITL STRUCTURAL CHARACTERIZATIONS OF CHLOROPLAST TRANSLOCON JRNL TITL 2 PROTEIN TIC110. JRNL REF PLANT J. V. 75 847 2013 JRNL REFN ISSN 0960-7412 JRNL PMID 23711301 JRNL DOI 10.1111/TPJ.12249 REMARK 2 REMARK 2 RESOLUTION. 4.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 185959.30 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.000000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 81.8 REMARK 3 NUMBER OF REFLECTIONS : 6673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.350 REMARK 3 FREE R VALUE : 0.366 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.6 REMARK 3 FREE R VALUE TEST SET COUNT : 706 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.8 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 793 REMARK 3 BIN R VALUE (WORKING SET) : 0.379 REMARK 3 BIN FREE R VALUE : 0.432 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.2 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 90 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.045 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.63 REMARK 3 B22 (A**2) : 3.63 REMARK 3 B33 (A**2) : -7.26 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.82 REMARK 3 ESD FROM SIGMAA (A) : 0.80 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 1.00 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 2.5 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.3 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.92 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 23.76 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 36.97 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 59.36 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 61.83 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.5 REMARK 3 BSOL : 1339.51 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 2 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 2 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 3 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 3 B-FACTOR (A**2) : NULL ; NULL REMARK 3 GROUP 4 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 4 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4BM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-13. REMARK 100 THE PDBE ID CODE IS EBI-56768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8171 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.20 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.5 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 161.60000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.80000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.20000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.40000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 202.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 161.60000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 80.80000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.40000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 121.20000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 202.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 871 REMARK 465 GLN A 872 REMARK 465 ASP A 873 REMARK 465 GLU A 874 REMARK 465 GLU A 875 REMARK 465 ARG A 876 REMARK 465 ASP A 877 REMARK 465 VAL A 878 REMARK 465 GLY A 879 REMARK 465 ASP A 880 REMARK 465 ASP A 881 REMARK 465 PRO A 882 REMARK 465 PHE A 883 REMARK 465 VAL A 884 REMARK 465 ARG A 885 REMARK 465 ARG A 886 REMARK 465 ALA A 887 REMARK 465 GLY A 888 REMARK 465 ALA A 889 REMARK 465 PHE A 890 REMARK 465 LEU A 891 REMARK 465 GLY A 892 REMARK 465 ILE A 893 REMARK 465 GLU A 894 REMARK 465 ALA A 895 REMARK 465 GLY A 896 REMARK 465 THR A 897 REMARK 465 ILE A 898 REMARK 465 THR A 899 REMARK 465 ILE A 900 REMARK 465 GLU A 901 REMARK 465 LEU A 902 REMARK 465 PHE A 932 REMARK 465 ASP A 933 REMARK 465 LEU A 973 REMARK 465 THR A 974 REMARK 465 SER A 975 REMARK 465 ALA A 976 REMARK 465 GLU A 977 REMARK 465 SER A 1046 REMARK 465 ARG A 1047 REMARK 465 THR A 1048 REMARK 465 PHE A 1049 REMARK 465 GLY A 1050 REMARK 465 ASP A 1068 REMARK 465 PRO A 1069 REMARK 465 VAL A 1070 REMARK 465 ARG A 1071 REMARK 465 ASP A 1072 REMARK 465 LEU A 1073 REMARK 465 LYS A 1074 REMARK 465 LEU A 1075 REMARK 465 THR A 1076 REMARK 465 GLY A 1095 REMARK 465 LEU A 1096 REMARK 465 ILE A 1097 REMARK 465 THR A 1098 REMARK 465 PRO A 1099 REMARK 465 GLU A 1100 REMARK 465 ASN A 1101 REMARK 465 GLN A 1102 REMARK 465 PHE A 1160 REMARK 465 GLY A 1161 REMARK 465 LYS A 1162 REMARK 465 LEU A 1163 REMARK 465 LEU A 1164 REMARK 465 PRO A 1165 REMARK 465 PHE A 1166 REMARK 465 GLN A 1167 REMARK 465 VAL A 1168 REMARK 465 GLN A 1169 REMARK 465 THR A 1170 REMARK 465 PRO A 1171 REMARK 465 THR A 1172 REMARK 465 VAL A 1173 REMARK 465 THR A 1174 REMARK 465 GLY A 1175 REMARK 465 ALA A 1176 REMARK 465 GLU A 1177 REMARK 465 ARG A 1178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 903 OG REMARK 470 ASN A 904 CG OD1 ND2 REMARK 470 LEU A 905 CG CD1 CD2 REMARK 470 ILE A 906 CG1 CG2 CD1 REMARK 470 ASP A 907 CG OD1 OD2 REMARK 470 PHE A 908 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 909 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 910 CG1 CG2 CD1 REMARK 470 ARG A 911 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 912 CG OD1 ND2 REMARK 470 ILE A 914 CG1 CG2 CD1 REMARK 470 LEU A 915 CG CD1 CD2 REMARK 470 GLU A 916 CG CD OE1 OE2 REMARK 470 GLU A 918 CG CD OE1 OE2 REMARK 470 ASN A 919 CG OD1 ND2 REMARK 470 GLU A 920 CG CD OE1 OE2 REMARK 470 GLN A 921 CG CD OE1 NE2 REMARK 470 VAL A 923 CG1 CG2 REMARK 470 TYR A 924 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO A 925 CG CD REMARK 470 VAL A 926 CG1 CG2 REMARK 470 ASN A 927 CG OD1 ND2 REMARK 470 LEU A 928 CG CD1 CD2 REMARK 470 ARG A 929 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 931 CG1 CG2 REMARK 470 LEU A 934 CG CD1 CD2 REMARK 470 ASN A 935 CG OD1 ND2 REMARK 470 ILE A 936 CG1 CG2 CD1 REMARK 470 LEU A 937 CG CD1 CD2 REMARK 470 GLN A 938 CG CD OE1 NE2 REMARK 470 GLU A 939 CG CD OE1 OE2 REMARK 470 TYR A 941 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 942 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 943 CG CD OE1 NE2 REMARK 470 TYR A 944 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 945 CG CD1 CD2 REMARK 470 ILE A 946 CG1 CG2 CD1 REMARK 470 GLN A 947 CG CD OE1 NE2 REMARK 470 SER A 948 OG REMARK 470 PHE A 949 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 952 CG CD CE NZ REMARK 470 SER A 953 OG REMARK 470 ARG A 954 CG CD NE CZ NH1 NH2 REMARK 470 THR A 955 OG1 CG2 REMARK 470 GLU A 956 CG CD OE1 OE2 REMARK 470 LYS A 957 CG CD CE NZ REMARK 470 GLU A 958 CG CD OE1 OE2 REMARK 470 ARG A 959 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 960 CG CD1 CD2 REMARK 470 PHE A 961 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 962 CG OD1 ND2 REMARK 470 ASN A 963 CG OD1 ND2 REMARK 470 LEU A 964 CG CD1 CD2 REMARK 470 HIS A 966 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 967 CG CD1 CD2 REMARK 470 ASN A 969 CG OD1 ND2 REMARK 470 ILE A 970 CG1 CG2 CD1 REMARK 470 LEU A 971 CG CD1 CD2 REMARK 470 VAL A 978 CG1 CG2 REMARK 470 ASN A 979 CG OD1 ND2 REMARK 470 ILE A 981 CG1 CG2 CD1 REMARK 470 HIS A 982 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 983 OG REMARK 470 ASN A 984 CG OD1 ND2 REMARK 470 ILE A 985 CG1 CG2 CD1 REMARK 470 SER A 987 OG REMARK 470 VAL A 988 CG1 CG2 REMARK 470 ILE A 989 CG1 CG2 CD1 REMARK 470 TYR A 990 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 991 CG CD CE NZ REMARK 470 THR A 992 OG1 CG2 REMARK 470 TYR A 993 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 995 OG REMARK 470 GLN A 996 CG CD OE1 NE2 REMARK 470 LEU A 998 CG CD1 CD2 REMARK 470 THR A 999 OG1 CG2 REMARK 470 ASN A1000 CG OD1 ND2 REMARK 470 ASN A1001 CG OD1 ND2 REMARK 470 ARG A1002 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1003 CG CD1 CD2 REMARK 470 GLU A1004 CG CD OE1 OE2 REMARK 470 GLU A1005 CG CD OE1 OE2 REMARK 470 LYS A1006 CG CD CE NZ REMARK 470 ASP A1007 CG OD1 OD2 REMARK 470 ILE A1008 CG1 CG2 CD1 REMARK 470 GLU A1009 CG CD OE1 OE2 REMARK 470 PHE A1010 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A1011 CG CD1 CD2 REMARK 470 ARG A1012 CG CD NE CZ NH1 NH2 REMARK 470 ASN A1013 CG OD1 ND2 REMARK 470 ILE A1014 CG1 CG2 CD1 REMARK 470 GLN A1015 CG CD OE1 NE2 REMARK 470 ASN A1016 CG OD1 ND2 REMARK 470 LEU A1018 CG CD1 CD2 REMARK 470 SER A1019 OG REMARK 470 ASP A1021 CG OD1 OD2 REMARK 470 GLU A1022 CG CD OE1 OE2 REMARK 470 THR A1024 OG1 CG2 REMARK 470 ARG A1026 CG CD NE CZ NH1 NH2 REMARK 470 THR A1027 OG1 CG2 REMARK 470 LEU A1028 CG CD1 CD2 REMARK 470 LEU A1029 CG CD1 CD2 REMARK 470 GLN A1030 CG CD OE1 NE2 REMARK 470 GLU A1031 CG CD OE1 OE2 REMARK 470 THR A1032 OG1 CG2 REMARK 470 LYS A1033 CG CD CE NZ REMARK 470 GLU A1034 CG CD OE1 OE2 REMARK 470 ARG A1036 CG CD NE CZ NH1 NH2 REMARK 470 PHE A1039 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A1040 CG CD1 CD2 REMARK 470 PHE A1041 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A1042 CG OD1 OD2 REMARK 470 LYS A1043 CG CD CE NZ REMARK 470 ILE A1044 CG1 CG2 CD1 REMARK 470 PHE A1045 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A1053 CG CD OE1 OE2 REMARK 470 VAL A1055 CG1 CG2 REMARK 470 GLU A1057 CG CD OE1 OE2 REMARK 470 PHE A1058 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A1059 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1060 CG CD NE CZ NH1 NH2 REMARK 470 VAL A1061 CG1 CG2 REMARK 470 ARG A1063 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1064 CG CD OE1 OE2 REMARK 470 LEU A1065 CG CD1 CD2 REMARK 470 ASP A1066 CG OD1 OD2 REMARK 470 VAL A1067 CG1 CG2 REMARK 470 GLU A1077 CG CD OE1 OE2 REMARK 470 ASP A1078 CG OD1 OD2 REMARK 470 ARG A1079 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1080 CG CD NE CZ NH1 NH2 REMARK 470 VAL A1081 CG1 CG2 REMARK 470 ARG A1082 CG CD NE CZ NH1 NH2 REMARK 470 PHE A1084 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A1085 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1087 CG CD OE1 OE2 REMARK 470 ILE A1088 CG1 CG2 CD1 REMARK 470 GLU A1089 CG CD OE1 OE2 REMARK 470 HIS A1090 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A1092 CG1 CG2 CD1 REMARK 470 GLU A1093 CG CD OE1 OE2 REMARK 470 ASN A1094 CG OD1 ND2 REMARK 470 SER A1103 OG REMARK 470 LEU A1104 CG CD1 CD2 REMARK 470 LEU A1105 CG CD1 CD2 REMARK 470 LYS A1106 CG CD CE NZ REMARK 470 GLU A1107 CG CD OE1 OE2 REMARK 470 SER A1108 OG REMARK 470 GLN A1109 CG CD OE1 NE2 REMARK 470 GLU A1110 CG CD OE1 OE2 REMARK 470 GLU A1111 CG CD OE1 OE2 REMARK 470 LEU A1112 CG CD1 CD2 REMARK 470 ILE A1114 CG1 CG2 CD1 REMARK 470 SER A1115 OG REMARK 470 GLU A1117 CG CD OE1 OE2 REMARK 470 LYS A1118 CG CD CE NZ REMARK 470 ARG A1120 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1121 CG CD OE1 NE2 REMARK 470 VAL A1122 CG1 CG2 REMARK 470 LEU A1123 CG CD1 CD2 REMARK 470 LEU A1124 CG CD1 CD2 REMARK 470 ASP A1125 CG OD1 OD2 REMARK 470 CYS A1126 SG REMARK 470 ILE A1127 CG1 CG2 CD1 REMARK 470 GLN A1128 CG CD OE1 NE2 REMARK 470 ASP A1129 CG OD1 OD2 REMARK 470 ARG A1130 CG CD NE CZ NH1 NH2 REMARK 470 CYS A1131 SG REMARK 470 GLU A1132 CG CD OE1 OE2 REMARK 470 LEU A1134 CG CD1 CD2 REMARK 470 ILE A1135 CG1 CG2 CD1 REMARK 470 VAL A1136 CG1 CG2 REMARK 470 GLN A1137 CG CD OE1 NE2 REMARK 470 SER A1141 OG REMARK 470 LEU A1142 CG CD1 CD2 REMARK 470 ARG A1143 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1144 CG CD OE1 NE2 REMARK 470 ARG A1145 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1146 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1147 CG CD OE1 NE2 REMARK 470 GLU A1148 CG CD OE1 OE2 REMARK 470 ARG A1152 CG CD NE CZ NH1 NH2 REMARK 470 ASP A1153 CG OD1 OD2 REMARK 470 LEU A1154 CG CD1 CD2 REMARK 470 SER A1155 OG REMARK 470 ARG A1156 CG CD NE CZ NH1 NH2 REMARK 470 LEU A1158 CG CD1 CD2 REMARK 470 ARG A1159 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1179 CG CD OE1 NE2 REMARK 470 GLU A1180 CG CD OE1 OE2 REMARK 470 LEU A1181 CG CD1 CD2 REMARK 470 TYR A1182 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A1183 CG CD1 CD2 REMARK 470 VAL A1184 CG1 CG2 REMARK 470 TYR A1185 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A1186 CG CD OE1 NE2 REMARK 470 TYR A1188 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A1190 CG CD1 CD2 REMARK 470 THR A1192 OG1 CG2 REMARK 470 ARG A1194 CG CD NE CZ NH1 NH2 REMARK 470 SER A1195 OG REMARK 470 ASN A1196 CG OD1 ND2 REMARK 470 GLU A1198 CG CD OE1 OE2 REMARK 470 ASN A1199 CG OD1 ND2 REMARK 470 ASP A1200 CG OD1 OD2 REMARK 470 GLN A1201 CG CD OE1 NE2 REMARK 470 VAL A1202 CG1 CG2 REMARK 470 LYS A1203 CG CD CE NZ REMARK 470 GLU A1204 CG CD OE1 OE2 REMARK 470 ASP A1205 CG OD1 OD2 REMARK 470 LEU A1206 CG CD1 CD2 REMARK 470 LEU A1208 CG CD1 CD2 REMARK 470 LEU A1209 CG CD1 CD2 REMARK 470 ARG A1210 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1211 CG CD OE1 OE2 REMARK 470 LEU A1213 CG CD1 CD2 REMARK 470 ILE A1215 CG1 CG2 CD1 REMARK 470 GLN A1216 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 903 N ASP A 907 2.18 REMARK 500 O LEU A 1011 N ILE A 1014 2.19 REMARK 500 O CYS A 1025 N THR A 1027 2.11 REMARK 500 O LEU A 1029 N LYS A 1033 2.13 REMARK 500 O TYR A 1185 N ALA A 1189 2.16 REMARK 500 O ARG A 1194 N ASN A 1196 2.20 REMARK 500 O GLU A 1211 N ILE A 1215 2.17 REMARK 500 O MET A 1212 N GLN A 1216 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1002 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 GLU A1005 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 ARG A1143 N - CA - C ANGL. DEV. = 17.8 DEGREES REMARK 500 GLN A1144 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 918 -103.10 -45.54 REMARK 500 VAL A 923 -83.16 -59.60 REMARK 500 ASN A 927 -91.70 -97.36 REMARK 500 LEU A 928 -42.83 -25.41 REMARK 500 ARG A 929 -70.75 -60.88 REMARK 500 GLN A 938 -75.43 -43.51 REMARK 500 ARG A 942 -94.15 -27.52 REMARK 500 PHE A 949 -0.35 -56.49 REMARK 500 ALA A 950 -156.42 -82.03 REMARK 500 ARG A 954 -36.44 -0.86 REMARK 500 LEU A 960 -87.43 -49.66 REMARK 500 HIS A 966 -9.25 -46.37 REMARK 500 ALA A 980 12.39 -66.05 REMARK 500 SER A 987 -37.82 -35.23 REMARK 500 LYS A 991 -82.45 -103.76 REMARK 500 THR A 992 -48.98 -20.06 REMARK 500 TYR A 993 -94.60 -64.24 REMARK 500 ALA A 994 -21.59 -37.91 REMARK 500 SER A 995 -87.08 -64.19 REMARK 500 THR A 999 -89.00 -53.85 REMARK 500 ASN A1000 88.20 -39.97 REMARK 500 ASN A1001 86.74 17.38 REMARK 500 ARG A1002 60.24 -167.26 REMARK 500 GLU A1004 -145.18 51.93 REMARK 500 ILE A1008 -70.44 -34.50 REMARK 500 GLU A1009 -88.15 -44.52 REMARK 500 LEU A1011 -84.39 -41.28 REMARK 500 ARG A1012 -73.51 -28.48 REMARK 500 ASN A1013 -37.29 -37.59 REMARK 500 SER A1019 -79.25 -102.76 REMARK 500 MET A1020 102.03 34.69 REMARK 500 GLU A1022 -19.53 -37.74 REMARK 500 ALA A1023 -27.98 -38.16 REMARK 500 THR A1024 -71.56 -37.85 REMARK 500 ARG A1026 4.27 -44.54 REMARK 500 THR A1027 -44.98 -148.88 REMARK 500 GLN A1030 -38.60 -34.55 REMARK 500 GLU A1031 -73.17 -79.40 REMARK 500 THR A1032 -34.72 -38.98 REMARK 500 LYS A1033 -96.76 -56.94 REMARK 500 ALA A1037 -5.75 -46.47 REMARK 500 PHE A1039 -92.64 -49.62 REMARK 500 LEU A1040 -1.67 -45.80 REMARK 500 ASP A1042 54.82 -97.32 REMARK 500 LYS A1043 7.97 -67.51 REMARK 500 ALA A1052 -34.39 -15.38 REMARK 500 CYS A1062 23.67 -64.93 REMARK 500 ARG A1063 -44.32 -131.00 REMARK 500 ASP A1066 43.33 -69.28 REMARK 500 ALA A1116 46.75 -107.10 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A1005 47.9 L L OUTSIDE RANGE REMARK 500 ARG A1143 21.5 L L OUTSIDE RANGE REMARK 500 GLN A1144 22.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 4BM5 A 871 1218 UNP M1V6H9 M1V6H9_CYAME 871 1218 SEQRES 1 A 348 GLY GLN ASP GLU GLU ARG ASP VAL GLY ASP ASP PRO PHE SEQRES 2 A 348 VAL ARG ARG ALA GLY ALA PHE LEU GLY ILE GLU ALA GLY SEQRES 3 A 348 THR ILE THR ILE GLU LEU SER ASN LEU ILE ASP PHE TYR SEQRES 4 A 348 ILE ARG ASN GLY ILE LEU GLU MET GLU ASN GLU GLN ALA SEQRES 5 A 348 VAL TYR PRO VAL ASN LEU ARG GLY VAL PHE ASP LEU ASN SEQRES 6 A 348 ILE LEU GLN GLU MET TYR ARG GLN TYR LEU ILE GLN SER SEQRES 7 A 348 PHE ALA ALA LYS SER ARG THR GLU LYS GLU ARG LEU PHE SEQRES 8 A 348 ASN ASN LEU ALA HIS LEU GLY ASN ILE LEU GLY LEU THR SEQRES 9 A 348 SER ALA GLU VAL ASN ALA ILE HIS SER ASN ILE GLY SER SEQRES 10 A 348 VAL ILE TYR LYS THR TYR ALA SER GLN ALA LEU THR ASN SEQRES 11 A 348 ASN ARG LEU GLU GLU LYS ASP ILE GLU PHE LEU ARG ASN SEQRES 12 A 348 ILE GLN ASN MET LEU SER MET ASP GLU ALA THR CYS ARG SEQRES 13 A 348 THR LEU LEU GLN GLU THR LYS GLU ALA ARG ALA GLY PHE SEQRES 14 A 348 LEU PHE ASP LYS ILE PHE SER ARG THR PHE GLY MET ALA SEQRES 15 A 348 GLU ALA VAL ALA GLU PHE ARG ARG VAL CYS ARG GLU LEU SEQRES 16 A 348 ASP VAL ASP PRO VAL ARG ASP LEU LYS LEU THR GLU ASP SEQRES 17 A 348 ARG ARG VAL ARG ALA PHE ARG ALA GLU ILE GLU HIS ALA SEQRES 18 A 348 ILE GLU ASN GLY LEU ILE THR PRO GLU ASN GLN SER LEU SEQRES 19 A 348 LEU LYS GLU SER GLN GLU GLU LEU GLY ILE SER ALA GLU SEQRES 20 A 348 LYS ALA ARG GLN VAL LEU LEU ASP CYS ILE GLN ASP ARG SEQRES 21 A 348 CYS GLU ALA LEU ILE VAL GLN ALA ALA ALA SER LEU ARG SEQRES 22 A 348 GLN ARG ARG GLN GLU GLY ALA ALA ARG ASP LEU SER ARG SEQRES 23 A 348 ALA LEU ARG PHE GLY LYS LEU LEU PRO PHE GLN VAL GLN SEQRES 24 A 348 THR PRO THR VAL THR GLY ALA GLU ARG GLN GLU LEU TYR SEQRES 25 A 348 LEU VAL TYR GLN ALA TYR ALA LEU GLY THR ALA ARG SER SEQRES 26 A 348 ASN ALA GLU ASN ASP GLN VAL LYS GLU ASP LEU ALA LEU SEQRES 27 A 348 LEU ARG GLU MET LEU GLY ILE GLN ALA ALA HELIX 1 1 SER A 903 PHE A 908 1 6 HELIX 2 2 ILE A 910 LEU A 915 1 6 HELIX 3 3 MET A 917 VAL A 931 1 15 HELIX 4 4 ASN A 935 PHE A 949 1 15 HELIX 5 5 THR A 955 GLY A 972 1 18 HELIX 6 6 VAL A 978 ALA A 980 5 3 HELIX 7 7 ILE A 981 LEU A 998 1 18 HELIX 8 8 GLU A 1005 MET A 1017 1 13 HELIX 9 9 ASP A 1021 ALA A 1023 5 3 HELIX 10 10 THR A 1024 PHE A 1039 1 16 HELIX 11 11 LEU A 1040 ASP A 1042 5 3 HELIX 12 12 ALA A 1052 CYS A 1062 1 11 HELIX 13 13 ASP A 1078 ASN A 1094 1 17 HELIX 14 14 GLU A 1107 LEU A 1112 1 6 HELIX 15 15 CYS A 1126 LEU A 1142 1 17 HELIX 16 16 GLY A 1149 LEU A 1154 1 6 HELIX 17 17 TYR A 1182 VAL A 1184 5 3 HELIX 18 18 TYR A 1185 ARG A 1194 1 10 HELIX 19 19 ASN A 1199 LEU A 1208 1 10 HELIX 20 20 LEU A 1208 LEU A 1213 1 6 CRYST1 121.100 121.100 242.400 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008258 0.004768 0.000000 0.00000 SCALE2 0.000000 0.009535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004125 0.00000