HEADER TRANSFERASE 07-MAY-13 4BMA TITLE STRUCTURAL OF ASPERGILLUS FUMIGATUS UDP-N-ACETYLGLUCOSAMINE TITLE 2 PYROPHOSPHORYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 5085; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1 KEYWDS TRANSFERASE, UDP-GLCNAC BIOSYNTHESIS PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR W.FANG,O.G.RAIMI,R.HURTADOGUERRERO,D.M.F.VANAALTEN REVDAT 4 20-DEC-23 4BMA 1 REMARK REVDAT 3 07-AUG-13 4BMA 1 JRNL REVDAT 2 26-JUN-13 4BMA 1 JRNL REVDAT 1 15-MAY-13 4BMA 0 JRNL AUTH W.FANG,T.DU,O.G.RAIMI,R.HURTADO-GUERRERO,M.D.URBANIAK, JRNL AUTH 2 A.F.IBRAHIM,M.A.FERGUSON,C.JIN,D.M.VAN AALTEN JRNL TITL GENETIC AND STRUCTURAL VALIDATION OF ASPERGILLUS FUMIGATUS JRNL TITL 2 UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE AS AN ANTIFUNGAL JRNL TITL 3 TARGET. JRNL REF MOL.MICROBIOL. V. 89 479 2013 JRNL REFN ISSN 0950-382X JRNL PMID 23750903 JRNL DOI 10.1111/MMI.12290 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 64787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3453 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4399 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7152 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.30000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.745 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7333 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9892 ; 1.959 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 911 ; 7.056 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 330 ;35.045 ;24.606 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1307 ;17.000 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;18.907 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1078 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5522 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.73100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YQS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.82450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.37200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 69.87200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.37200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.82450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 69.87200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 VAL A 9 REMARK 465 SER A 10 REMARK 465 ASN A 11 REMARK 465 PHE A 12 REMARK 465 MET A 13 REMARK 465 GLU A 14 REMARK 465 ARG A 15 REMARK 465 PHE A 16 REMARK 465 HIS A 17 REMARK 465 GLY A 18 REMARK 465 HIS A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 ASN A 22 REMARK 465 LEU A 23 REMARK 465 PRO A 24 REMARK 465 ARG A 25 REMARK 465 GLU A 26 REMARK 465 LYS A 86 REMARK 465 ALA A 87 REMARK 465 ASP A 88 REMARK 465 ASP A 89 REMARK 465 GLY A 90 REMARK 465 GLU A 390 REMARK 465 GLY A 391 REMARK 465 THR A 392 REMARK 465 GLY A 393 REMARK 465 GLU A 394 REMARK 465 PHE A 395 REMARK 465 PHE A 396 REMARK 465 LYS A 397 REMARK 465 PRO A 398 REMARK 465 GLU A 399 REMARK 465 LYS A 400 REMARK 465 GLU A 508 REMARK 465 GLU A 509 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 3 REMARK 465 ALA B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 6 REMARK 465 GLU B 7 REMARK 465 THR B 8 REMARK 465 VAL B 9 REMARK 465 SER B 10 REMARK 465 ASN B 11 REMARK 465 PHE B 12 REMARK 465 MET B 13 REMARK 465 GLU B 14 REMARK 465 ARG B 15 REMARK 465 PHE B 16 REMARK 465 HIS B 17 REMARK 465 GLY B 18 REMARK 465 HIS B 19 REMARK 465 PRO B 20 REMARK 465 GLU B 21 REMARK 465 ASN B 22 REMARK 465 LEU B 23 REMARK 465 PRO B 24 REMARK 465 ARG B 25 REMARK 465 GLU B 26 REMARK 465 LYS B 86 REMARK 465 ALA B 87 REMARK 465 ASP B 88 REMARK 465 ASP B 89 REMARK 465 GLY B 90 REMARK 465 PRO B 91 REMARK 465 SER B 331 REMARK 465 GLU B 332 REMARK 465 ILE B 333 REMARK 465 ASP B 334 REMARK 465 LYS B 335 REMARK 465 GLU B 336 REMARK 465 THR B 337 REMARK 465 ALA B 338 REMARK 465 GLU B 339 REMARK 465 ALA B 340 REMARK 465 LYS B 341 REMARK 465 ASP B 342 REMARK 465 PRO B 343 REMARK 465 LYS B 344 REMARK 465 GLN B 345 REMARK 465 PRO B 346 REMARK 465 ASP B 347 REMARK 465 VAL B 348 REMARK 465 LEU B 349 REMARK 465 LYS B 350 REMARK 465 PHE B 351 REMARK 465 LYS B 389 REMARK 465 GLU B 390 REMARK 465 GLY B 391 REMARK 465 THR B 392 REMARK 465 GLY B 393 REMARK 465 GLU B 394 REMARK 465 PHE B 395 REMARK 465 GLU B 508 REMARK 465 GLU B 509 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER B 108 O HOH B 2029 1.95 REMARK 500 O ASP A 99 O HOH A 2023 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 374 CG HIS B 374 CD2 0.056 REMARK 500 HIS B 379 CG HIS B 379 CD2 0.062 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 264 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 326 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU A 349 CB - CG - CD1 ANGL. DEV. = 11.6 DEGREES REMARK 500 LYS B 128 CD - CE - NZ ANGL. DEV. = -22.3 DEGREES REMARK 500 ARG B 460 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 460 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 83 58.08 -116.17 REMARK 500 ARG A 141 -9.88 -48.27 REMARK 500 HIS A 158 18.17 58.33 REMARK 500 ILE A 179 -58.81 -148.07 REMARK 500 ASP A 287 115.78 -39.72 REMARK 500 LEU A 319 -178.28 -173.20 REMARK 500 TRP A 372 -14.93 -141.64 REMARK 500 ASP A 445 60.36 33.04 REMARK 500 ASP A 474 -57.05 12.99 REMARK 500 GLU B 95 -158.69 -91.95 REMARK 500 ILE B 100 -94.00 58.33 REMARK 500 HIS B 158 23.00 48.66 REMARK 500 ASP B 247 33.33 -88.44 REMARK 500 ASP B 287 115.62 -38.74 REMARK 500 ARG B 309 80.67 102.12 REMARK 500 ALA B 311 -153.32 58.37 REMARK 500 GLU B 313 -163.71 56.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 99 ILE B 100 60.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1508 DBREF 4BMA A 1 509 UNP Q4WAR0 Q4WAR0_ASPFU 1 509 DBREF 4BMA B 1 509 UNP Q4WAR0 Q4WAR0_ASPFU 1 509 SEQRES 1 A 509 MET ALA VAL ALA ILE LYS GLU THR VAL SER ASN PHE MET SEQRES 2 A 509 GLU ARG PHE HIS GLY HIS PRO GLU ASN LEU PRO ARG GLU SEQRES 3 A 509 PRO SER ALA GLU GLU PHE GLN GLN LEU ARG LYS LYS TYR SEQRES 4 A 509 THR ASP ALA GLY GLN GLY HIS VAL PHE ALA PHE VAL ASP SEQRES 5 A 509 GLU LEU GLN THR GLY GLU ARG SER GLN LEU PHE HIS GLN SEQRES 6 A 509 LEU SER SER PHE ASP PRO VAL ARG ILE ASN GLU LEU ALA SEQRES 7 A 509 ASP LYS ALA LEU ASN PRO PRO LYS ALA ASP ASP GLY PRO SEQRES 8 A 509 ALA SER LEU GLU PRO LEU PRO ASP ILE ALA THR ALA SER SEQRES 9 A 509 ILE LEU ASP SER ASP PRO LYS ASP LEU GLU GLN TRP TYR SEQRES 10 A 509 GLU GLU GLY LEU LYS LEU VAL ALA GLY ASN LYS VAL ALA SEQRES 11 A 509 VAL VAL LEU MET ALA GLY GLY GLN GLY THR ARG LEU GLY SEQRES 12 A 509 SER SER ALA PRO LYS GLY CYS PHE ASP ILE GLY LEU PRO SEQRES 13 A 509 SER HIS LYS SER LEU PHE GLN ILE GLN ALA GLU ARG ILE SEQRES 14 A 509 ALA LYS LEU GLN LEU LEU ALA GLN ARG ILE SER GLY LYS SEQRES 15 A 509 GLU ALA VAL ILE PRO TRP TYR VAL MET THR SER GLY PRO SEQRES 16 A 509 THR ARG LYS PRO THR GLU GLU PHE PHE GLU GLN HIS LYS SEQRES 17 A 509 TYR PHE GLY LEU ASN LYS SER ASP VAL ILE ILE PHE GLU SEQRES 18 A 509 GLN GLY VAL LEU PRO CYS ILE SER ASN GLU GLY LYS ILE SEQRES 19 A 509 LEU MET GLU SER LYS PHE LYS VAL ALA VAL ALA PRO ASP SEQRES 20 A 509 GLY ASN GLY GLY ILE TYR GLN ALA LEU LEU THR SER GLY SEQRES 21 A 509 VAL ARG GLU ASP MET ARG LYS ARG GLY ILE GLU HIS ILE SEQRES 22 A 509 HIS THR TYR CYS VAL ASP ASN CYS LEU VAL LYS VAL ALA SEQRES 23 A 509 ASP PRO VAL PHE ILE GLY PHE ALA ALA SER LYS GLN VAL SEQRES 24 A 509 ASP ILE ALA THR LYS VAL VAL ARG LYS ARG ASN ALA THR SEQRES 25 A 509 GLU SER VAL GLY LEU ILE LEU GLN LYS ASN GLY LYS PRO SEQRES 26 A 509 ASP VAL VAL GLU TYR SER GLU ILE ASP LYS GLU THR ALA SEQRES 27 A 509 GLU ALA LYS ASP PRO LYS GLN PRO ASP VAL LEU LYS PHE SEQRES 28 A 509 ARG ALA ALA ASN ILE VAL ASN HIS TYR TYR SER PHE LYS SEQRES 29 A 509 PHE PHE GLU SER ILE GLU LEU TRP ALA HIS LYS LEU PRO SEQRES 30 A 509 HIS HIS VAL ALA ARG LYS LYS ILE PRO CYS ILE LYS GLU SEQRES 31 A 509 GLY THR GLY GLU PHE PHE LYS PRO GLU LYS PRO ASN GLY SEQRES 32 A 509 ILE LYS LEU GLU GLN PHE VAL PHE ASP VAL PHE PRO MET SEQRES 33 A 509 THR PRO LEU GLU LYS PHE ALA CYS ILE GLU VAL ARG ARG SEQRES 34 A 509 GLU ASP GLU PHE SER PRO LEU LYS ASN ALA ARG GLY THR SEQRES 35 A 509 GLY GLU ASP ASP PRO ASP THR SER LYS ARG ASP ILE MET SEQRES 36 A 509 SER GLN GLY GLN ARG TRP ILE GLU LYS ALA GLY GLY ILE SEQRES 37 A 509 VAL ILE THR GLU GLY ASP VAL VAL GLY VAL GLU VAL SER SEQRES 38 A 509 PRO LEU ILE SER TYR GLY GLY GLU GLY LEU GLU PHE LEU SEQRES 39 A 509 LYS GLY ARG GLU ILE LYS ALA PRO ALA PHE ILE GLU LYS SEQRES 40 A 509 GLU GLU SEQRES 1 B 509 MET ALA VAL ALA ILE LYS GLU THR VAL SER ASN PHE MET SEQRES 2 B 509 GLU ARG PHE HIS GLY HIS PRO GLU ASN LEU PRO ARG GLU SEQRES 3 B 509 PRO SER ALA GLU GLU PHE GLN GLN LEU ARG LYS LYS TYR SEQRES 4 B 509 THR ASP ALA GLY GLN GLY HIS VAL PHE ALA PHE VAL ASP SEQRES 5 B 509 GLU LEU GLN THR GLY GLU ARG SER GLN LEU PHE HIS GLN SEQRES 6 B 509 LEU SER SER PHE ASP PRO VAL ARG ILE ASN GLU LEU ALA SEQRES 7 B 509 ASP LYS ALA LEU ASN PRO PRO LYS ALA ASP ASP GLY PRO SEQRES 8 B 509 ALA SER LEU GLU PRO LEU PRO ASP ILE ALA THR ALA SER SEQRES 9 B 509 ILE LEU ASP SER ASP PRO LYS ASP LEU GLU GLN TRP TYR SEQRES 10 B 509 GLU GLU GLY LEU LYS LEU VAL ALA GLY ASN LYS VAL ALA SEQRES 11 B 509 VAL VAL LEU MET ALA GLY GLY GLN GLY THR ARG LEU GLY SEQRES 12 B 509 SER SER ALA PRO LYS GLY CYS PHE ASP ILE GLY LEU PRO SEQRES 13 B 509 SER HIS LYS SER LEU PHE GLN ILE GLN ALA GLU ARG ILE SEQRES 14 B 509 ALA LYS LEU GLN LEU LEU ALA GLN ARG ILE SER GLY LYS SEQRES 15 B 509 GLU ALA VAL ILE PRO TRP TYR VAL MET THR SER GLY PRO SEQRES 16 B 509 THR ARG LYS PRO THR GLU GLU PHE PHE GLU GLN HIS LYS SEQRES 17 B 509 TYR PHE GLY LEU ASN LYS SER ASP VAL ILE ILE PHE GLU SEQRES 18 B 509 GLN GLY VAL LEU PRO CYS ILE SER ASN GLU GLY LYS ILE SEQRES 19 B 509 LEU MET GLU SER LYS PHE LYS VAL ALA VAL ALA PRO ASP SEQRES 20 B 509 GLY ASN GLY GLY ILE TYR GLN ALA LEU LEU THR SER GLY SEQRES 21 B 509 VAL ARG GLU ASP MET ARG LYS ARG GLY ILE GLU HIS ILE SEQRES 22 B 509 HIS THR TYR CYS VAL ASP ASN CYS LEU VAL LYS VAL ALA SEQRES 23 B 509 ASP PRO VAL PHE ILE GLY PHE ALA ALA SER LYS GLN VAL SEQRES 24 B 509 ASP ILE ALA THR LYS VAL VAL ARG LYS ARG ASN ALA THR SEQRES 25 B 509 GLU SER VAL GLY LEU ILE LEU GLN LYS ASN GLY LYS PRO SEQRES 26 B 509 ASP VAL VAL GLU TYR SER GLU ILE ASP LYS GLU THR ALA SEQRES 27 B 509 GLU ALA LYS ASP PRO LYS GLN PRO ASP VAL LEU LYS PHE SEQRES 28 B 509 ARG ALA ALA ASN ILE VAL ASN HIS TYR TYR SER PHE LYS SEQRES 29 B 509 PHE PHE GLU SER ILE GLU LEU TRP ALA HIS LYS LEU PRO SEQRES 30 B 509 HIS HIS VAL ALA ARG LYS LYS ILE PRO CYS ILE LYS GLU SEQRES 31 B 509 GLY THR GLY GLU PHE PHE LYS PRO GLU LYS PRO ASN GLY SEQRES 32 B 509 ILE LYS LEU GLU GLN PHE VAL PHE ASP VAL PHE PRO MET SEQRES 33 B 509 THR PRO LEU GLU LYS PHE ALA CYS ILE GLU VAL ARG ARG SEQRES 34 B 509 GLU ASP GLU PHE SER PRO LEU LYS ASN ALA ARG GLY THR SEQRES 35 B 509 GLY GLU ASP ASP PRO ASP THR SER LYS ARG ASP ILE MET SEQRES 36 B 509 SER GLN GLY GLN ARG TRP ILE GLU LYS ALA GLY GLY ILE SEQRES 37 B 509 VAL ILE THR GLU GLY ASP VAL VAL GLY VAL GLU VAL SER SEQRES 38 B 509 PRO LEU ILE SER TYR GLY GLY GLU GLY LEU GLU PHE LEU SEQRES 39 B 509 LYS GLY ARG GLU ILE LYS ALA PRO ALA PHE ILE GLU LYS SEQRES 40 B 509 GLU GLU HET GOL A1508 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *324(H2 O) HELIX 1 1 SER A 28 ALA A 42 1 15 HELIX 2 2 GLN A 44 ALA A 49 5 6 HELIX 3 3 PHE A 50 LEU A 54 5 5 HELIX 4 4 GLN A 55 SER A 68 1 14 HELIX 5 5 ASP A 70 ASN A 83 1 14 HELIX 6 6 PRO A 98 ILE A 100 5 3 HELIX 7 7 ASP A 109 GLY A 126 1 18 HELIX 8 8 PRO A 147 PHE A 151 5 5 HELIX 9 9 SER A 160 GLY A 181 1 22 HELIX 10 10 SER A 193 PRO A 195 5 3 HELIX 11 11 THR A 196 HIS A 207 1 12 HELIX 12 12 LYS A 208 LEU A 212 5 5 HELIX 13 13 ASN A 213 SER A 215 5 3 HELIX 14 14 GLY A 248 GLY A 250 5 3 HELIX 15 15 GLY A 251 SER A 259 1 9 HELIX 16 16 GLY A 260 GLY A 269 1 10 HELIX 17 17 ASP A 287 LYS A 297 1 11 HELIX 18 18 GLU A 329 ILE A 333 5 5 HELIX 19 19 ASP A 334 ALA A 340 1 7 HELIX 20 20 PHE A 363 SER A 368 1 6 HELIX 21 21 SER A 368 ALA A 373 1 6 HELIX 22 22 HIS A 374 LEU A 376 5 3 HELIX 23 23 PHE A 409 THR A 417 5 9 HELIX 24 24 PRO A 418 GLU A 420 5 3 HELIX 25 25 ARG A 428 PHE A 433 1 6 HELIX 26 26 ASP A 446 ALA A 465 1 20 HELIX 27 27 LEU A 491 LYS A 495 5 5 HELIX 28 28 SER B 28 ALA B 42 1 15 HELIX 29 29 GLN B 44 ALA B 49 5 6 HELIX 30 30 PHE B 50 LEU B 54 5 5 HELIX 31 31 GLN B 55 SER B 68 1 14 HELIX 32 32 ASP B 70 ASN B 83 1 14 HELIX 33 33 ASP B 109 GLY B 126 1 18 HELIX 34 34 GLY B 139 GLY B 143 5 5 HELIX 35 35 LYS B 148 PHE B 151 5 4 HELIX 36 36 SER B 160 GLY B 181 1 22 HELIX 37 37 SER B 193 HIS B 207 1 15 HELIX 38 38 LYS B 208 LEU B 212 5 5 HELIX 39 39 ASN B 213 SER B 215 5 3 HELIX 40 40 GLY B 248 GLY B 250 5 3 HELIX 41 41 GLY B 251 SER B 259 1 9 HELIX 42 42 GLY B 260 GLY B 269 1 10 HELIX 43 43 ASP B 287 LYS B 297 1 11 HELIX 44 44 PHE B 363 GLU B 367 1 5 HELIX 45 45 SER B 368 ALA B 373 1 6 HELIX 46 46 HIS B 374 LEU B 376 5 3 HELIX 47 47 PHE B 409 THR B 417 5 9 HELIX 48 48 PRO B 418 GLU B 420 5 3 HELIX 49 49 ARG B 428 PHE B 433 1 6 HELIX 50 50 ASP B 446 ALA B 465 1 20 HELIX 51 51 LEU B 491 LYS B 495 5 5 SHEET 1 AA 3 LEU A 94 GLU A 95 0 SHEET 2 AA 3 LEU A 317 LYS A 321 -1 O GLN A 320 N GLU A 95 SHEET 3 AA 3 LYS A 324 VAL A 328 -1 O LYS A 324 N LYS A 321 SHEET 1 AB 8 THR A 102 SER A 104 0 SHEET 2 AB 8 PHE A 422 GLU A 426 1 O CYS A 424 N ALA A 103 SHEET 3 AB 8 ILE A 301 ARG A 307 1 O ILE A 301 N ALA A 423 SHEET 4 AB 8 ALA A 353 SER A 362 -1 O ALA A 354 N VAL A 306 SHEET 5 AB 8 HIS A 272 CYS A 277 -1 O ILE A 273 N TYR A 361 SHEET 6 AB 8 VAL A 129 MET A 134 1 O ALA A 130 N HIS A 274 SHEET 7 AB 8 TRP A 188 THR A 192 1 O TYR A 189 N LEU A 133 SHEET 8 AB 8 VAL A 217 GLU A 221 1 O ILE A 218 N VAL A 190 SHEET 1 AC 2 VAL A 224 PRO A 226 0 SHEET 2 AC 2 VAL A 244 PRO A 246 -1 O ALA A 245 N LEU A 225 SHEET 1 AD 3 ILE A 228 SER A 229 0 SHEET 2 AD 3 GLY A 403 GLU A 407 -1 O ILE A 404 N ILE A 228 SHEET 3 AD 3 HIS A 379 LYS A 383 -1 O HIS A 379 N GLU A 407 SHEET 1 AE 2 MET A 236 SER A 238 0 SHEET 2 AE 2 LYS A 241 VAL A 242 -1 O LYS A 241 N SER A 238 SHEET 1 AF 2 ILE A 468 THR A 471 0 SHEET 2 AF 2 GLU A 498 ALA A 501 1 O ILE A 499 N ILE A 470 SHEET 1 AG 2 VAL A 478 VAL A 480 0 SHEET 2 AG 2 ALA A 503 ILE A 505 1 O ALA A 503 N GLU A 479 SHEET 1 BA 3 LEU B 94 GLU B 95 0 SHEET 2 BA 3 LEU B 317 LYS B 321 -1 O GLN B 320 N GLU B 95 SHEET 3 BA 3 LYS B 324 VAL B 328 -1 O LYS B 324 N LYS B 321 SHEET 1 BB 8 THR B 102 SER B 104 0 SHEET 2 BB 8 PHE B 422 GLU B 426 1 O CYS B 424 N ALA B 103 SHEET 3 BB 8 ILE B 301 ARG B 307 1 O ILE B 301 N ALA B 423 SHEET 4 BB 8 ALA B 353 SER B 362 -1 O ALA B 354 N VAL B 306 SHEET 5 BB 8 HIS B 272 CYS B 277 -1 O ILE B 273 N TYR B 361 SHEET 6 BB 8 VAL B 129 ALA B 135 1 O ALA B 130 N HIS B 274 SHEET 7 BB 8 TRP B 188 THR B 192 1 O TYR B 189 N LEU B 133 SHEET 8 BB 8 VAL B 217 GLU B 221 1 O ILE B 218 N VAL B 190 SHEET 1 BC 2 VAL B 224 PRO B 226 0 SHEET 2 BC 2 VAL B 244 PRO B 246 -1 O ALA B 245 N LEU B 225 SHEET 1 BD 3 ILE B 228 SER B 229 0 SHEET 2 BD 3 GLY B 403 GLU B 407 -1 O ILE B 404 N ILE B 228 SHEET 3 BD 3 HIS B 379 LYS B 383 -1 O HIS B 379 N GLU B 407 SHEET 1 BE 2 MET B 236 SER B 238 0 SHEET 2 BE 2 LYS B 241 VAL B 242 -1 O LYS B 241 N SER B 238 SHEET 1 BF 2 ILE B 468 THR B 471 0 SHEET 2 BF 2 GLU B 498 ALA B 501 1 O ILE B 499 N ILE B 470 SHEET 1 BG 2 VAL B 478 VAL B 480 0 SHEET 2 BG 2 ALA B 503 ILE B 505 1 O ALA B 503 N GLU B 479 CISPEP 1 ALA A 501 PRO A 502 0 -0.39 CISPEP 2 LYS B 308 ARG B 309 0 10.40 CISPEP 3 ARG B 309 ASN B 310 0 -12.49 CISPEP 4 ASN B 310 ALA B 311 0 20.06 CISPEP 5 GLU B 313 SER B 314 0 -5.23 CISPEP 6 ALA B 501 PRO B 502 0 0.31 SITE 1 AC1 8 MET A 134 ALA A 135 GLY A 136 GLY A 137 SITE 2 AC1 8 MET A 191 GLN A 222 GLY A 248 ASN A 249 CRYST1 55.649 139.744 144.744 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017970 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006909 0.00000