HEADER OXIDOREDUCTASE 10-MAY-13 4BMT TITLE CRYSTAL STRUCTURE OF RIBONUCLEOTIDE REDUCTASE DI-IRON NRDF FROM TITLE 2 BACILLUS CEREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIBONUCLEOTIDE REDUCTASE DI-IRON NRDF; COMPND 5 EC: 1.17.4.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 ATCC: 14579; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-P.HERSLETH,A.B.TOMTER,M.HAMMERSTAD,A.K.ROHR,K.K.ANDERSSON REVDAT 2 20-DEC-23 4BMT 1 REMARK LINK REVDAT 1 19-MAR-14 4BMT 0 JRNL AUTH M.HAMMERSTAD,H.HERSLETH,A.B.TOMTER,A.K.ROHR,K.K.ANDERSSON JRNL TITL CRYSTAL STRUCTURE OF BACILLUS CEREUS CLASS IB RIBONUCLEOTIDE JRNL TITL 2 REDUCTASE DI-IRON NRDF IN COMPLEX WITH NRDI. JRNL REF ACS CHEM.BIOL. V. 9 526 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 24295378 JRNL DOI 10.1021/CB400757H REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 3 NUMBER OF REFLECTIONS : 28225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1498 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1980 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.334 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.440 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4785 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4579 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6481 ; 1.782 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10566 ; 1.332 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 588 ; 5.924 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;43.065 ;25.622 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 884 ;18.997 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;23.083 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 723 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5392 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1074 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2310 ; 1.565 ; 1.795 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2309 ; 1.563 ; 1.795 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2888 ; 2.382 ; 2.682 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2475 ; 2.221 ; 2.062 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 287 B 1 287 17033 0.15 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BMT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9724 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29742 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BMQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MG-FORMATE, 20% (W/V) PEG 3350, REMARK 280 AND 0.1 M HEPES, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.64500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 288 REMARK 465 THR A 289 REMARK 465 ASP A 290 REMARK 465 THR A 291 REMARK 465 LYS A 292 REMARK 465 ASN A 293 REMARK 465 HIS A 294 REMARK 465 ASP A 295 REMARK 465 PHE A 296 REMARK 465 PHE A 297 REMARK 465 SER A 298 REMARK 465 VAL A 299 REMARK 465 LYS A 300 REMARK 465 GLY A 301 REMARK 465 ASN A 302 REMARK 465 GLY A 303 REMARK 465 TYR A 304 REMARK 465 VAL A 305 REMARK 465 LYS A 306 REMARK 465 ALA A 307 REMARK 465 THR A 308 REMARK 465 ASN A 309 REMARK 465 VAL A 310 REMARK 465 GLU A 311 REMARK 465 LYS A 312 REMARK 465 LEU A 313 REMARK 465 ALA A 314 REMARK 465 ASP A 315 REMARK 465 ASP A 316 REMARK 465 ASP A 317 REMARK 465 PHE A 318 REMARK 465 VAL A 319 REMARK 465 PHE A 320 REMARK 465 ASN A 321 REMARK 465 PHE A 322 REMARK 465 ARG B 288 REMARK 465 THR B 289 REMARK 465 ASP B 290 REMARK 465 THR B 291 REMARK 465 LYS B 292 REMARK 465 ASN B 293 REMARK 465 HIS B 294 REMARK 465 ASP B 295 REMARK 465 PHE B 296 REMARK 465 PHE B 297 REMARK 465 SER B 298 REMARK 465 VAL B 299 REMARK 465 LYS B 300 REMARK 465 GLY B 301 REMARK 465 ASN B 302 REMARK 465 GLY B 303 REMARK 465 TYR B 304 REMARK 465 VAL B 305 REMARK 465 LYS B 306 REMARK 465 ALA B 307 REMARK 465 THR B 308 REMARK 465 ASN B 309 REMARK 465 VAL B 310 REMARK 465 GLU B 311 REMARK 465 LYS B 312 REMARK 465 LEU B 313 REMARK 465 ALA B 314 REMARK 465 ASP B 315 REMARK 465 ASP B 316 REMARK 465 ASP B 317 REMARK 465 PHE B 318 REMARK 465 VAL B 319 REMARK 465 PHE B 320 REMARK 465 ASN B 321 REMARK 465 PHE B 322 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 13 -15.67 -146.25 REMARK 500 GLU A 68 -50.34 -130.38 REMARK 500 TYR A 163 -63.69 -134.43 REMARK 500 PHE B 13 -14.09 -147.68 REMARK 500 GLU B 68 -50.47 -130.93 REMARK 500 TYR B 163 -63.08 -140.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1323 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 62 OD1 REMARK 620 2 GLU A 93 OE1 81.4 REMARK 620 3 HIS A 96 ND1 128.1 113.1 REMARK 620 4 GLU A 195 OE2 141.2 81.0 90.7 REMARK 620 5 HOH A2015 O 102.0 140.7 95.6 72.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1324 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 93 OE2 REMARK 620 2 GLU A 161 OE2 104.0 REMARK 620 3 GLU A 161 OE1 116.7 58.9 REMARK 620 4 GLU A 195 OE1 160.1 95.2 77.7 REMARK 620 5 GLU A 195 OE2 96.6 157.8 118.5 63.7 REMARK 620 6 HIS A 198 ND1 76.8 86.4 144.4 99.6 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B1323 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 62 OD1 REMARK 620 2 GLU B 93 OE1 77.9 REMARK 620 3 HIS B 96 ND1 115.1 102.4 REMARK 620 4 GLU B 195 OE2 153.1 85.6 88.9 REMARK 620 5 HOH B2010 O 88.4 149.5 108.1 95.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B1324 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 93 OE2 REMARK 620 2 GLU B 161 OE2 114.3 REMARK 620 3 GLU B 195 OE2 94.4 151.0 REMARK 620 4 GLU B 195 OE1 154.4 91.0 60.1 REMARK 620 5 HIS B 198 ND1 77.5 94.0 87.6 97.9 REMARK 620 6 HOH B2011 O 94.7 101.6 79.5 83.2 164.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 1324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 1324 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BMQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBONUCLEOTIDE REDUCTASE APO-NRDF FROM REMARK 900 BACILLUS CEREUS (SPACE GROUP C2) REMARK 900 RELATED ID: 4BMR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBONUCLEOTIDE REDUCTASE APO-NRDF FROM REMARK 900 BACILLUS CEREUS (SPACE GROUP P21) REMARK 900 RELATED ID: 4BMU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RIBONUCLEOTIDE REDUCTASE DI-MANGANESE (II) REMARK 900 NRDF FROM BACILLUS CEREUS DBREF 4BMT A 1 322 UNP Q81G55 Q81G55_BACCR 1 322 DBREF 4BMT B 1 322 UNP Q81G55 Q81G55_BACCR 1 322 SEQRES 1 A 322 MET ARG ALA VAL ASN TRP ASN LYS LYS GLU ASP ASP PHE SEQRES 2 A 322 SER LEU MET PHE TRP LYS GLN ASN ILE ALA GLN PHE TRP SEQRES 3 A 322 THR GLU GLU GLU ILE ALA VAL SER SER ASP LYS ASN THR SEQRES 4 A 322 TRP VAL GLN LEU SER LYS GLU GLU GLN ILE ALA TYR LYS SEQRES 5 A 322 ARG VAL LEU GLY GLY LEU THR LEU LEU ASP THR LYS GLN SEQRES 6 A 322 GLY GLY GLU GLY MET PRO LEU VAL LEU VAL HIS LEU GLU SEQRES 7 A 322 ASN LEU GLN ALA LYS SER VAL LEU ALA PHE MET GLY ALA SEQRES 8 A 322 MET GLU GLU VAL HIS ALA LYS SER TYR SER HIS ILE PHE SEQRES 9 A 322 THR THR LEU ALA THR GLU GLU GLU ILE ASP ASP ILE PHE SEQRES 10 A 322 ASP TRP VAL ASP ASN HIS PRO LEU LEU GLU LYS LYS ALA SEQRES 11 A 322 GLY ILE ILE THR SER TYR TYR ARG ARG LEU LEU LYS PRO SEQRES 12 A 322 GLU VAL THR LYS LYS GLU LEU TYR MET ALA MET VAL ALA SEQRES 13 A 322 SER VAL PHE LEU GLU SER TYR LEU PHE TYR SER GLY PHE SEQRES 14 A 322 PHE TYR PRO LEU TYR LEU ALA GLY GLN GLY LYS LEU THR SEQRES 15 A 322 ALA SER GLY GLU ILE ILE ASN LEU ILE ILE ARG ASP GLU SEQRES 16 A 322 SER ILE HIS GLY VAL PHE VAL GLY ILE LEU ALA GLN GLN SEQRES 17 A 322 ILE PHE ALA GLU LEU SER ALA GLU GLU GLN GLN GLU VAL SEQRES 18 A 322 GLN LYS GLU THR GLN GLU LEU LEU MET GLU LEU TYR GLU SEQRES 19 A 322 ILE GLU MET ALA TYR THR GLU GLU ILE TYR THR SER ILE SEQRES 20 A 322 GLY LEU VAL GLU ASP VAL ASN ARG PHE VAL ARG TYR ASN SEQRES 21 A 322 ALA ASN LYS GLY LEU MET ASN LEU GLY LEU GLU PRO LYS SEQRES 22 A 322 PHE GLU GLU GLU GLU ILE ASN PRO ILE VAL LEU ASN GLY SEQRES 23 A 322 LEU ARG THR ASP THR LYS ASN HIS ASP PHE PHE SER VAL SEQRES 24 A 322 LYS GLY ASN GLY TYR VAL LYS ALA THR ASN VAL GLU LYS SEQRES 25 A 322 LEU ALA ASP ASP ASP PHE VAL PHE ASN PHE SEQRES 1 B 322 MET ARG ALA VAL ASN TRP ASN LYS LYS GLU ASP ASP PHE SEQRES 2 B 322 SER LEU MET PHE TRP LYS GLN ASN ILE ALA GLN PHE TRP SEQRES 3 B 322 THR GLU GLU GLU ILE ALA VAL SER SER ASP LYS ASN THR SEQRES 4 B 322 TRP VAL GLN LEU SER LYS GLU GLU GLN ILE ALA TYR LYS SEQRES 5 B 322 ARG VAL LEU GLY GLY LEU THR LEU LEU ASP THR LYS GLN SEQRES 6 B 322 GLY GLY GLU GLY MET PRO LEU VAL LEU VAL HIS LEU GLU SEQRES 7 B 322 ASN LEU GLN ALA LYS SER VAL LEU ALA PHE MET GLY ALA SEQRES 8 B 322 MET GLU GLU VAL HIS ALA LYS SER TYR SER HIS ILE PHE SEQRES 9 B 322 THR THR LEU ALA THR GLU GLU GLU ILE ASP ASP ILE PHE SEQRES 10 B 322 ASP TRP VAL ASP ASN HIS PRO LEU LEU GLU LYS LYS ALA SEQRES 11 B 322 GLY ILE ILE THR SER TYR TYR ARG ARG LEU LEU LYS PRO SEQRES 12 B 322 GLU VAL THR LYS LYS GLU LEU TYR MET ALA MET VAL ALA SEQRES 13 B 322 SER VAL PHE LEU GLU SER TYR LEU PHE TYR SER GLY PHE SEQRES 14 B 322 PHE TYR PRO LEU TYR LEU ALA GLY GLN GLY LYS LEU THR SEQRES 15 B 322 ALA SER GLY GLU ILE ILE ASN LEU ILE ILE ARG ASP GLU SEQRES 16 B 322 SER ILE HIS GLY VAL PHE VAL GLY ILE LEU ALA GLN GLN SEQRES 17 B 322 ILE PHE ALA GLU LEU SER ALA GLU GLU GLN GLN GLU VAL SEQRES 18 B 322 GLN LYS GLU THR GLN GLU LEU LEU MET GLU LEU TYR GLU SEQRES 19 B 322 ILE GLU MET ALA TYR THR GLU GLU ILE TYR THR SER ILE SEQRES 20 B 322 GLY LEU VAL GLU ASP VAL ASN ARG PHE VAL ARG TYR ASN SEQRES 21 B 322 ALA ASN LYS GLY LEU MET ASN LEU GLY LEU GLU PRO LYS SEQRES 22 B 322 PHE GLU GLU GLU GLU ILE ASN PRO ILE VAL LEU ASN GLY SEQRES 23 B 322 LEU ARG THR ASP THR LYS ASN HIS ASP PHE PHE SER VAL SEQRES 24 B 322 LYS GLY ASN GLY TYR VAL LYS ALA THR ASN VAL GLU LYS SEQRES 25 B 322 LEU ALA ASP ASP ASP PHE VAL PHE ASN PHE HET FE2 A1323 1 HET FE2 A1324 1 HET FE2 B1323 1 HET FE2 B1324 1 HETNAM FE2 FE (II) ION FORMUL 3 FE2 4(FE 2+) FORMUL 7 HOH *61(H2 O) HELIX 1 1 PHE A 13 GLN A 24 1 12 HELIX 2 2 THR A 27 ILE A 31 5 5 HELIX 3 3 VAL A 33 SER A 35 5 3 HELIX 4 4 ASP A 36 VAL A 41 1 6 HELIX 5 5 SER A 44 GLU A 68 1 25 HELIX 6 6 GLU A 68 HIS A 76 1 9 HELIX 7 7 ASN A 79 ALA A 108 1 30 HELIX 8 8 THR A 109 HIS A 123 1 15 HELIX 9 9 HIS A 123 ARG A 139 1 17 HELIX 10 10 THR A 146 TYR A 163 1 18 HELIX 11 11 PHE A 165 GLY A 177 1 13 HELIX 12 12 LEU A 181 GLU A 212 1 32 HELIX 13 13 SER A 214 THR A 245 1 32 HELIX 14 14 SER A 246 GLY A 248 5 3 HELIX 15 15 LEU A 249 LEU A 268 1 20 HELIX 16 16 ASN A 280 LEU A 287 1 8 HELIX 17 17 PHE B 13 GLN B 24 1 12 HELIX 18 18 THR B 27 ILE B 31 5 5 HELIX 19 19 VAL B 33 SER B 35 5 3 HELIX 20 20 ASP B 36 VAL B 41 1 6 HELIX 21 21 SER B 44 GLU B 68 1 25 HELIX 22 22 GLU B 68 HIS B 76 1 9 HELIX 23 23 ASN B 79 ALA B 108 1 30 HELIX 24 24 THR B 109 HIS B 123 1 15 HELIX 25 25 HIS B 123 ARG B 139 1 17 HELIX 26 26 THR B 146 TYR B 163 1 18 HELIX 27 27 PHE B 165 GLY B 177 1 13 HELIX 28 28 LEU B 181 GLU B 212 1 32 HELIX 29 29 SER B 214 THR B 245 1 32 HELIX 30 30 SER B 246 GLY B 248 5 3 HELIX 31 31 LEU B 249 LEU B 268 1 20 HELIX 32 32 ASN B 280 GLY B 286 1 7 LINK OD1 ASP A 62 FE FE2 A1323 1555 1555 1.89 LINK OE1 GLU A 93 FE FE2 A1323 1555 1555 1.97 LINK OE2 GLU A 93 FE FE2 A1324 1555 1555 2.13 LINK ND1 HIS A 96 FE FE2 A1323 1555 1555 2.21 LINK OE2 GLU A 161 FE FE2 A1324 1555 1555 2.11 LINK OE1 GLU A 161 FE FE2 A1324 1555 1555 2.33 LINK OE2 GLU A 195 FE FE2 A1323 1555 1555 2.46 LINK OE1 GLU A 195 FE FE2 A1324 1555 1555 2.03 LINK OE2 GLU A 195 FE FE2 A1324 1555 1555 2.19 LINK ND1 HIS A 198 FE FE2 A1324 1555 1555 2.31 LINK FE FE2 A1323 O HOH A2015 1555 1555 1.94 LINK OD1 ASP B 62 FE FE2 B1323 1555 1555 1.97 LINK OE1 GLU B 93 FE FE2 B1323 1555 1555 2.06 LINK OE2 GLU B 93 FE FE2 B1324 1555 1555 2.13 LINK ND1 HIS B 96 FE FE2 B1323 1555 1555 2.46 LINK OE2 GLU B 161 FE FE2 B1324 1555 1555 2.35 LINK OE2 GLU B 195 FE FE2 B1323 1555 1555 2.25 LINK OE2 GLU B 195 FE FE2 B1324 1555 1555 2.31 LINK OE1 GLU B 195 FE FE2 B1324 1555 1555 2.10 LINK ND1 HIS B 198 FE FE2 B1324 1555 1555 2.32 LINK FE FE2 B1323 O HOH B2010 1555 1555 2.07 LINK FE FE2 B1324 O HOH B2011 1555 1555 2.77 SITE 1 AC1 6 ASP A 62 GLU A 93 HIS A 96 GLU A 195 SITE 2 AC1 6 HOH A2015 HOH A2016 SITE 1 AC2 5 GLU A 93 GLU A 161 GLU A 195 HIS A 198 SITE 2 AC2 5 HOH A2016 SITE 1 AC3 6 ASP B 62 GLU B 93 HIS B 96 GLU B 195 SITE 2 AC3 6 HOH B2010 HOH B2011 SITE 1 AC4 5 GLU B 93 GLU B 161 GLU B 195 HIS B 198 SITE 2 AC4 5 HOH B2011 CRYST1 62.030 49.290 98.510 90.00 107.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016121 0.000000 0.004978 0.00000 SCALE2 0.000000 0.020288 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010624 0.00000