HEADER OXIDOREDUCTASE 13-MAY-13 4BN8 TITLE NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS IN COMPLEX WITH 4- TITLE 2 NITROPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER INDUCED NITROREDUCTASE D; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FLAVIN MONONUCLEOTIDE COFACTOR - IN COMPLEX WITH 2 4- COMPND 6 NITROPHENOL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 272623; SOURCE 4 STRAIN: IL1403; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH5[ALPHA] KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.E.OBERHOLZER,S.WALTERSPERGER,R.BAUMGARTNER REVDAT 2 20-DEC-23 4BN8 1 REMARK REVDAT 1 28-MAY-14 4BN8 0 JRNL AUTH A.E.OBERHOLZER,S.WALTERSPERGER,R.BAUMGARTNER JRNL TITL NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 17078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.4327 - 3.4434 0.99 2979 157 0.1501 0.1789 REMARK 3 2 3.4434 - 2.7331 1.00 2880 152 0.1467 0.1797 REMARK 3 3 2.7331 - 2.3876 1.00 2869 151 0.1517 0.1733 REMARK 3 4 2.3876 - 2.1693 1.00 2830 149 0.1706 0.2116 REMARK 3 5 2.1693 - 2.0138 0.94 2683 142 0.2125 0.2454 REMARK 3 6 2.0138 - 1.8951 0.70 1982 104 0.2829 0.3229 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1570 REMARK 3 ANGLE : 0.804 2138 REMARK 3 CHIRALITY : 0.052 230 REMARK 3 PLANARITY : 0.003 276 REMARK 3 DIHEDRAL : 14.748 575 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 2 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3000 -29.7028 13.9601 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.1691 REMARK 3 T33: 0.1722 T12: 0.0489 REMARK 3 T13: -0.0368 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 4.7913 L22: 1.6587 REMARK 3 L33: 2.6449 L12: -0.1099 REMARK 3 L13: -1.6400 L23: 1.9027 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: -0.2572 S13: -0.1759 REMARK 3 S21: 0.0125 S22: -0.0466 S23: 0.0043 REMARK 3 S31: 0.0130 S32: 0.2982 S33: 0.0319 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 23 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9787 -29.0490 2.3439 REMARK 3 T TENSOR REMARK 3 T11: 0.2337 T22: 0.2287 REMARK 3 T33: 0.2190 T12: 0.0090 REMARK 3 T13: 0.0198 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 3.4801 L22: 4.8389 REMARK 3 L33: 4.4700 L12: -1.7829 REMARK 3 L13: -2.1900 L23: -0.1260 REMARK 3 S TENSOR REMARK 3 S11: -0.3094 S12: 0.6854 S13: -0.9404 REMARK 3 S21: -0.4984 S22: -0.1446 S23: 0.2868 REMARK 3 S31: 0.5250 S32: 0.0856 S33: 0.1986 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 36 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6579 -14.6293 3.0984 REMARK 3 T TENSOR REMARK 3 T11: 0.2369 T22: 0.2142 REMARK 3 T33: 0.2642 T12: -0.0514 REMARK 3 T13: -0.0078 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.9932 L22: 2.4008 REMARK 3 L33: 1.8778 L12: -0.9907 REMARK 3 L13: 0.3349 L23: -0.6510 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.3177 S13: 0.3801 REMARK 3 S21: -0.1816 S22: -0.1076 S23: -0.4804 REMARK 3 S31: -0.1745 S32: 0.3474 S33: -0.0574 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 97 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5051 -8.8044 5.6288 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.1576 REMARK 3 T33: 0.2548 T12: 0.0416 REMARK 3 T13: -0.0401 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 3.8690 L22: 1.2597 REMARK 3 L33: 3.0872 L12: -0.2893 REMARK 3 L13: -1.1300 L23: 0.2607 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: 0.3950 S13: 0.4501 REMARK 3 S21: 0.0824 S22: 0.0172 S23: 0.1150 REMARK 3 S31: -0.3958 S32: -0.5158 S33: 0.0999 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 116 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7860 -16.0145 13.7388 REMARK 3 T TENSOR REMARK 3 T11: 0.1829 T22: 0.1304 REMARK 3 T33: 0.1814 T12: 0.0054 REMARK 3 T13: -0.0198 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 4.6100 L22: 6.3030 REMARK 3 L33: 2.8033 L12: -3.5442 REMARK 3 L13: -0.3864 L23: 0.0333 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.3169 S13: 0.1580 REMARK 3 S21: -0.0930 S22: 0.1651 S23: 0.2676 REMARK 3 S31: -0.4426 S32: -0.1746 S33: -0.0735 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 145 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3690 -12.2066 3.5162 REMARK 3 T TENSOR REMARK 3 T11: 0.2416 T22: 0.2367 REMARK 3 T33: 0.2733 T12: -0.0337 REMARK 3 T13: 0.0107 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 2.1043 L22: 3.6051 REMARK 3 L33: 2.5222 L12: -1.3286 REMARK 3 L13: 0.0803 L23: -0.9335 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: 0.2366 S13: 0.3626 REMARK 3 S21: -0.2172 S22: -0.1396 S23: -0.2404 REMARK 3 S31: -0.3328 S32: 0.1429 S33: 0.0739 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 181 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3834 -23.3328 28.8986 REMARK 3 T TENSOR REMARK 3 T11: 0.2073 T22: 0.1972 REMARK 3 T33: 0.2046 T12: 0.0097 REMARK 3 T13: -0.0312 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.9746 L22: 1.0421 REMARK 3 L33: 5.5390 L12: -0.6170 REMARK 3 L13: -1.7735 L23: 1.2305 REMARK 3 S TENSOR REMARK 3 S11: -0.0911 S12: -0.4860 S13: -0.0058 REMARK 3 S21: 0.1969 S22: 0.1446 S23: -0.1126 REMARK 3 S31: 0.1402 S32: 0.4846 S33: -0.0289 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17092 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WQF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.28600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.28600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.94400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.40200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.94400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.40200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.28600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.94400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.40200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.28600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.94400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.40200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -53.88800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.28600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2003 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2122 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2126 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2127 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2148 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 75 REMARK 465 GLY A 76 REMARK 465 VAL A 77 REMARK 465 PRO A 78 REMARK 465 GLU A 79 REMARK 465 SER A 80 REMARK 465 ALA A 81 REMARK 465 TRP A 82 REMARK 465 ASP A 83 REMARK 465 ASN A 84 REMARK 465 THR A 85 REMARK 465 ARG A 86 REMARK 465 ALA A 87 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 202 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2109 O HOH A 2182 1.94 REMARK 500 O HOH A 2071 O HOH A 2072 1.96 REMARK 500 OE1 GLU A 8 O HOH A 2007 2.02 REMARK 500 O LYS A 88 O HOH A 2129 2.04 REMARK 500 O HOH A 2139 O HOH A 2142 2.09 REMARK 500 NH1 ARG A 18 O HOH A 2046 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2134 O HOH A 2213 3455 2.05 REMARK 500 O HOH A 2018 O HOH A 2074 3455 2.15 REMARK 500 O HOH A 2019 O HOH A 2099 6445 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NPO A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BN6 RELATED DB: PDB REMARK 900 NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS IN COMPLEX WITH REMARK 900 CHLORAMPHENICOL REMARK 900 RELATED ID: 4BN7 RELATED DB: PDB REMARK 900 NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS IN COMPLEX WITH 2,6- REMARK 900 DICHLOROPHENOLINDOPHENOL REMARK 900 RELATED ID: 4BN9 RELATED DB: PDB REMARK 900 NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS IN COMPLEX WITH REMARK 900 NICOTINIC ACID REMARK 900 RELATED ID: 4BNB RELATED DB: PDB REMARK 900 NITROREDUCTASE CIND FROM LACTOCOCCUS LACTIS IN COMPLEX WITH 4- REMARK 900 NITROQUINOLINE 1-OXIDE DBREF 4BN8 A 2 202 UNP Q9CED0 Q9CED0_LACLA 2 202 SEQRES 1 A 201 SER PHE ILE LYS SER LEU GLU ASN ARG ARG THR ILE TYR SEQRES 2 A 201 ALA LEU GLY ARG ASN VAL GLN ASP GLU GLU LYS VAL ILE SEQRES 3 A 201 GLU THR ILE LYS GLU ALA VAL ARG PHE SER PRO THR ALA SEQRES 4 A 201 PHE ASN SER GLN THR GLY ARG LEU LEU ILE LEU THR GLY SEQRES 5 A 201 ASP ALA GLN ASP LYS LEU TRP ASP GLU ILE VAL ALA PRO SEQRES 6 A 201 GLU LEU LYS ALA ALA MET GLU ALA GLN GLY VAL PRO GLU SEQRES 7 A 201 SER ALA TRP ASP ASN THR ARG ALA LYS LEU ASP GLY PHE SEQRES 8 A 201 LYS ALA ALA PHE GLY THR ILE LEU PHE PHE GLU ASP GLN SEQRES 9 A 201 ALA VAL VAL LYS ASN LEU GLN GLU GLN PHE ALA LEU TYR SEQRES 10 A 201 ALA ASP ASN PHE PRO VAL TRP SER GLU GLN GLY SER GLY SEQRES 11 A 201 ILE ILE SER VAL ASN VAL TRP THR ALA LEU ALA GLU LEU SEQRES 12 A 201 GLY LEU GLY ALA ASN LEU GLN HIS TYR ASN PRO LEU ILE SEQRES 13 A 201 ASP GLU ALA VAL ALA LYS GLU TRP ASN LEU PRO GLU SER SEQRES 14 A 201 TRP LYS LEU ARG GLY GLN LEU VAL PHE GLY SER ILE GLU SEQRES 15 A 201 ALA PRO ALA GLY GLU LYS THR PHE MET ASP ASP ALA ASP SEQRES 16 A 201 ARG PHE ILE VAL ALA LYS HET FMN A 504 50 HET NPO A 505 15 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM NPO P-NITROPHENOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 NPO C6 H5 N O3 FORMUL 4 HOH *219(H2 O) HELIX 1 1 SER A 2 ARG A 10 1 9 HELIX 2 2 ASP A 22 PHE A 36 1 15 HELIX 3 3 THR A 39 SER A 43 5 5 HELIX 4 4 GLY A 53 ILE A 63 1 11 HELIX 5 5 ILE A 63 ALA A 74 1 12 HELIX 6 6 LEU A 89 ALA A 94 1 6 HELIX 7 7 GLN A 105 PHE A 115 1 11 HELIX 8 8 ALA A 116 ALA A 119 5 4 HELIX 9 9 ASP A 120 LEU A 144 1 25 HELIX 10 10 ILE A 157 TRP A 165 1 9 HELIX 11 11 ASP A 193 ARG A 197 5 5 SHEET 1 AA 2 LEU A 16 GLY A 17 0 SHEET 2 AA 2 TRP A 171 ILE A 182 -1 O SER A 181 N GLY A 17 SHEET 1 AB 4 GLY A 46 THR A 52 0 SHEET 2 AB 4 GLY A 97 ASP A 104 -1 O THR A 98 N LEU A 51 SHEET 3 AB 4 TRP A 171 ILE A 182 -1 O LYS A 172 N GLU A 103 SHEET 4 AB 4 LEU A 146 GLN A 151 1 O GLY A 147 N GLY A 180 SHEET 1 AC 4 GLY A 46 THR A 52 0 SHEET 2 AC 4 GLY A 97 ASP A 104 -1 O THR A 98 N LEU A 51 SHEET 3 AC 4 TRP A 171 ILE A 182 -1 O LYS A 172 N GLU A 103 SHEET 4 AC 4 LEU A 16 GLY A 17 -1 O GLY A 17 N SER A 181 SHEET 1 AD 2 LEU A 146 GLN A 151 0 SHEET 2 AD 2 TRP A 171 ILE A 182 1 O GLN A 176 N GLN A 151 CISPEP 1 ASN A 154 PRO A 155 0 3.54 SITE 1 AC1 18 ARG A 10 ARG A 11 THR A 12 TYR A 14 SITE 2 AC1 18 PRO A 38 THR A 39 ALA A 40 PHE A 41 SITE 3 AC1 18 ASN A 42 GLN A 128 LEU A 150 GLN A 151 SITE 4 AC1 18 HIS A 152 LYS A 189 NPO A 505 HOH A2034 SITE 5 AC1 18 HOH A2042 HOH A2219 SITE 1 AC2 3 PHE A 41 TYR A 118 FMN A 504 CRYST1 53.888 120.804 68.572 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018557 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014583 0.00000