HEADER DNA BINDING PROTEIN 14-MAY-13 4BNC TITLE CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF HUMAN ETV1 COMPLEXED TITLE 2 WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN ETV1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP)-3'; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP)-3'; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606 KEYWDS DNA-BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.K.ALLERSTON,C.D.O.COOPER,T.KROJER,A.CHAIKUAD,M.VOLLMAR,D.S.FROESE, AUTHOR 2 C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA,F.VON DELFT,O.GILEADI REVDAT 4 08-MAY-24 4BNC 1 REMARK REVDAT 3 10-JUN-15 4BNC 1 JRNL REVDAT 2 29-APR-15 4BNC 1 JRNL REVDAT 1 03-JUL-13 4BNC 0 SPRSDE 03-JUL-13 4BNC 4B06 JRNL AUTH C.D.O.COOPER,J.A.NEWMAN,H.AITKENHEAD,C.K.ALLERSTON,O.GILEADI JRNL TITL STRUCTURES OF THE ETS DOMAINS OF TRANSCRIPTION FACTORS ETV1, JRNL TITL 2 ETV4, ETV5 AND FEV: DETERMINANTS OF DNA BINDING AND REDOX JRNL TITL 3 REGULATION BY DISULFIDE BOND FORMATION. JRNL REF J.BIOL.CHEM. V. 290 13692 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25866208 JRNL DOI 10.1074/JBC.M115.646737 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 6594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 310 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1809 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2296 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1722 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE : 0.2409 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.81 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 87 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 734 REMARK 3 NUCLEIC ACID ATOMS : 404 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 127.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 123.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.93060 REMARK 3 B22 (A**2) : -7.93060 REMARK 3 B33 (A**2) : 15.86110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.899 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.508 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.274 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.442 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.266 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1207 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1716 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 433 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 14 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 133 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1207 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 153 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1260 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.67 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 4.01 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 49.5355 61.1800 51.2881 REMARK 3 T TENSOR REMARK 3 T11: -0.2842 T22: 0.3587 REMARK 3 T33: -0.2973 T12: -0.0445 REMARK 3 T13: 0.2195 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 9.0211 L22: 2.3461 REMARK 3 L33: 9.0114 L12: 2.4041 REMARK 3 L13: -0.6107 L23: -2.5429 REMARK 3 S TENSOR REMARK 3 S11: -0.4073 S12: 0.3415 S13: -0.1994 REMARK 3 S21: -0.9004 S22: 0.4405 S23: 0.0292 REMARK 3 S31: -0.1799 S32: -0.7270 S33: -0.0332 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND C REMARK 3 ORIGIN FOR THE GROUP (A): 48.5697 55.3900 66.6360 REMARK 3 T TENSOR REMARK 3 T11: -0.6079 T22: 0.6079 REMARK 3 T33: -0.0224 T12: -0.0392 REMARK 3 T13: 0.1803 T23: 0.1539 REMARK 3 L TENSOR REMARK 3 L11: 15.3530 L22: 6.8905 REMARK 3 L33: 13.9932 L12: -4.3976 REMARK 3 L13: -1.4665 L23: -1.7460 REMARK 3 S TENSOR REMARK 3 S11: -0.4325 S12: -0.8267 S13: -0.6486 REMARK 3 S21: 0.1217 S22: 0.0463 S23: -0.5442 REMARK 3 S31: 0.3295 S32: -0.4732 S33: 0.3862 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BNC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6594 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 129.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 1.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 82.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEMET PROTEIN/DNA WAS CRYSTALLISED IN REMARK 280 20%(W/V) PEG 3350 0.2M POTASSIUM CITRATE. NATIVE PROTEIN/DNA WAS REMARK 280 CRYSTALLISED IN 28% LMW PEG SMEAR, 100MM TRIS, PH 8.5, 200MM REMARK 280 NACL, 5% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.79350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.19025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.39675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.79350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.39675 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 97.19025 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 324 REMARK 465 MET A 325 REMARK 465 GLY A 326 REMARK 465 PRO A 327 REMARK 465 THR A 328 REMARK 465 SER A 329 REMARK 465 GLN A 330 REMARK 465 ARG A 331 REMARK 465 ARG A 332 REMARK 465 GLY A 333 REMARK 465 ASN A 429 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 342 CG1 CG2 REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 364 CG CD CE NZ REMARK 470 ILE A 366 CG1 CG2 CD1 REMARK 470 GLU A 367 CG CD OE1 OE2 REMARK 470 ARG A 373 CZ NH1 NH2 REMARK 470 ILE A 377 CG1 CG2 CD1 REMARK 470 ARG A 381 NH1 NH2 REMARK 470 GLU A 398 CD OE1 OE2 REMARK 470 LYS A 399 CD CE NZ REMARK 470 VAL A 405 CG1 CG2 REMARK 470 GLU A 408 CG CD OE1 OE2 REMARK 470 VAL A 411 CG1 CG2 REMARK 470 LYS A 413 CD CE NZ REMARK 470 VAL A 415 CG1 CG2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 PHE A 426 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 428 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 2 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC B 3 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC C 11 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 DC C 11 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC C 16 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC C 17 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 406 134.42 -39.85 REMARK 500 CYS A 416 75.17 -102.29 REMARK 500 ALA A 425 44.66 -103.96 REMARK 500 PHE A 426 149.12 172.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 4BNC A 326 429 UNP P50549 ETV1_HUMAN 223 326 DBREF 4BNC B 1 10 PDB 4BNC 4BNC 1 10 DBREF 4BNC C 11 20 PDB 4BNC 4BNC 11 20 SEQADV 4BNC SER A 324 UNP P50549 EXPRESSION TAG SEQADV 4BNC MET A 325 UNP P50549 EXPRESSION TAG SEQADV 4BNC SER A 329 UNP P50549 TYR 226 CONFLICT SEQADV 4BNC SER A 427 UNP P50549 PRO 324 CONFLICT SEQRES 1 A 106 SER MET GLY PRO THR SER GLN ARG ARG GLY SER LEU GLN SEQRES 2 A 106 LEU TRP GLN PHE LEU VAL ALA LEU LEU ASP ASP PRO SER SEQRES 3 A 106 ASN SER HIS PHE ILE ALA TRP THR GLY ARG GLY MET GLU SEQRES 4 A 106 PHE LYS LEU ILE GLU PRO GLU GLU VAL ALA ARG ARG TRP SEQRES 5 A 106 GLY ILE GLN LYS ASN ARG PRO ALA MET ASN TYR ASP LYS SEQRES 6 A 106 LEU SER ARG SER LEU ARG TYR TYR TYR GLU LYS GLY ILE SEQRES 7 A 106 MET GLN LYS VAL ALA GLY GLU ARG TYR VAL TYR LYS PHE SEQRES 8 A 106 VAL CYS ASP PRO GLU ALA LEU PHE SER MET ALA PHE SER SEQRES 9 A 106 ASP ASN SEQRES 1 B 10 DA DC DC DG DG DA DA DG DT DG SEQRES 1 C 10 DC DA DC DT DT DC DC DG DG DT HELIX 1 1 GLN A 336 ASP A 347 1 12 HELIX 2 2 PRO A 348 SER A 351 5 4 HELIX 3 3 GLU A 367 ASN A 380 1 14 HELIX 4 4 ASN A 385 GLY A 400 1 16 HELIX 5 5 ASP A 417 ALA A 425 1 9 SHEET 1 AA 4 ALA A 355 TRP A 356 0 SHEET 2 AA 4 GLU A 362 LYS A 364 -1 O LYS A 364 N ALA A 355 SHEET 3 AA 4 VAL A 411 PHE A 414 -1 O TYR A 412 N PHE A 363 SHEET 4 AA 4 MET A 402 LYS A 404 -1 O GLN A 403 N LYS A 413 CRYST1 64.883 64.883 129.587 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007717 0.00000