HEADER TRANSFERASE 15-MAY-13 4BNO OBSLTE 08-OCT-14 4BNO 4UOE TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM SPERMIDINE SYNTHASE IN TITLE 2 COMPLEX WITH 5'-DEOXY-5'-METHYLTHIOADENOSINE AND 4-AMINOMETHYL TITLE 3 ANILINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPERMIDINE SYNTHASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 41-321; COMPND 5 EC: 2.5.1.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15-TEV-LIC KEYWDS TRANSFERASE, AMINOPROPYL TRANSFERASE, POLYAMINE PATHWAY, KEYWDS 2 ROSSMANN-LIKE FOLD EXPDTA X-RAY DIFFRACTION AUTHOR J.SPRENGER,J.C.HALANDER,B.SVENSSON,S.AL-KARADAGHI, L.PERSSON REVDAT 2 08-OCT-14 4BNO 1 OBSLTE REVDAT 1 28-MAY-14 4BNO 0 JRNL AUTH J.SPRENGER,J.C.HALANDER,B.SVENSSON,S.AL-KARADAGHI,L.PERSSON JRNL TITL AROMATIC AMINES AS NOVEL CLASS OF SPERMIDINE SYNTHASE JRNL TITL 2 INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 95.92 REMARK 3 NUMBER OF REFLECTIONS : 72309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20131 REMARK 3 R VALUE (WORKING SET) : 0.19902 REMARK 3 FREE R VALUE : 0.24532 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 3822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.046 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.098 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5214 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.309 REMARK 3 BIN FREE R VALUE SET COUNT : 267 REMARK 3 BIN FREE R VALUE : 0.338 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.745 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01 REMARK 3 B22 (A**2) : -0.04 REMARK 3 B33 (A**2) : 0.03 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -0.03 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7039 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6768 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9498 ; 1.933 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15688 ; 1.039 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 840 ; 6.873 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 293 ;39.761 ;25.700 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1283 ;14.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.268 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1054 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7709 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1528 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4BNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-MAY-13. REMARK 100 THE PDBE ID CODE IS EBI-56848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04122 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MULTILAYER MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD (165 MM) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76132 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.04 REMARK 200 RESOLUTION RANGE LOW (A) : 29.54 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.25 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.13 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.17 REMARK 200 R MERGE FOR SHELL (I) : 0.48 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.15 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2I7C REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27.5% PEG 3350 , 0.1 M MES, 0.1 REMARK 280 M AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 99.02500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.30800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 99.02500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 67.30800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -198.05000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 ASN B 281 REMARK 465 ILE B 282 REMARK 465 GLY C 0 REMARK 465 SER C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 160 N1 4ZY A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 187 CA - CB - SG ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 256 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG C 132 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 192 -164.86 76.05 REMARK 500 ILE A 196 -2.88 -146.63 REMARK 500 LEU A 211 -42.71 -130.60 REMARK 500 ASN A 281 -11.31 84.51 REMARK 500 ASP B 157 76.32 -105.54 REMARK 500 CYS B 191 45.74 -141.32 REMARK 500 GLU B 192 -171.91 62.41 REMARK 500 ILE B 196 -7.36 -142.21 REMARK 500 CYS B 227 -0.58 77.72 REMARK 500 TYR B 259 -67.45 -140.36 REMARK 500 TYR C 26 146.43 -170.32 REMARK 500 PHE C 121 54.69 -140.59 REMARK 500 PHE C 169 56.68 -109.67 REMARK 500 CYS C 191 40.40 -152.47 REMARK 500 GLU C 192 -174.26 71.37 REMARK 500 ILE C 196 -7.57 -141.31 REMARK 500 CYS C 227 -1.30 76.33 REMARK 500 TYR C 259 -62.41 -133.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4ZY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4ZY B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PG B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4ZY C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MTA C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 502 DBREF 4BNO A 2 282 UNP Q8II73 Q8II73_PLAF7 41 321 DBREF 4BNO B 2 282 UNP Q8II73 Q8II73_PLAF7 41 321 DBREF 4BNO C 2 282 UNP Q8II73 Q8II73_PLAF7 41 321 SEQADV 4BNO GLY A 0 UNP Q8II73 EXPRESSION TAG SEQADV 4BNO SER A 1 UNP Q8II73 EXPRESSION TAG SEQADV 4BNO GLY B 0 UNP Q8II73 EXPRESSION TAG SEQADV 4BNO SER B 1 UNP Q8II73 EXPRESSION TAG SEQADV 4BNO GLY C 0 UNP Q8II73 EXPRESSION TAG SEQADV 4BNO SER C 1 UNP Q8II73 EXPRESSION TAG SEQRES 1 A 283 GLY SER LYS LYS TRP PHE SER GLU PHE SER ILE MET TRP SEQRES 2 A 283 PRO GLY GLN ALA PHE SER LEU LYS ILE LYS LYS ILE LEU SEQRES 3 A 283 TYR GLU THR LYS SER LYS TYR GLN ASN VAL LEU VAL PHE SEQRES 4 A 283 GLU SER THR THR TYR GLY LYS VAL LEU VAL LEU ASP GLY SEQRES 5 A 283 VAL ILE GLN LEU THR GLU LYS ASP GLU PHE ALA TYR HIS SEQRES 6 A 283 GLU MET MET THR HIS VAL PRO MET THR VAL SER LYS GLU SEQRES 7 A 283 PRO LYS ASN VAL LEU VAL VAL GLY GLY GLY ASP GLY GLY SEQRES 8 A 283 ILE ILE ARG GLU LEU CYS LYS TYR LYS SER VAL GLU ASN SEQRES 9 A 283 ILE ASP ILE CYS GLU ILE ASP GLU THR VAL ILE GLU VAL SEQRES 10 A 283 SER LYS ILE TYR PHE LYS ASN ILE SER CYS GLY TYR GLU SEQRES 11 A 283 ASP LYS ARG VAL ASN VAL PHE ILE GLU ASP ALA SER LYS SEQRES 12 A 283 PHE LEU GLU ASN VAL THR ASN THR TYR ASP VAL ILE ILE SEQRES 13 A 283 VAL ASP SER SER ASP PRO ILE GLY PRO ALA GLU THR LEU SEQRES 14 A 283 PHE ASN GLN ASN PHE TYR GLU LYS ILE TYR ASN ALA LEU SEQRES 15 A 283 LYS PRO ASN GLY TYR CYS VAL ALA GLN CYS GLU SER LEU SEQRES 16 A 283 TRP ILE HIS VAL GLY THR ILE LYS ASN MET ILE GLY TYR SEQRES 17 A 283 ALA LYS LYS LEU PHE LYS LYS VAL GLU TYR ALA ASN ILE SEQRES 18 A 283 SER ILE PRO THR TYR PRO CYS GLY CYS ILE GLY ILE LEU SEQRES 19 A 283 CYS CYS SER LYS THR ASP THR GLY LEU THR LYS PRO ASN SEQRES 20 A 283 LYS LYS LEU GLU SER LYS GLU PHE ALA ASP LEU LYS TYR SEQRES 21 A 283 TYR ASN TYR GLU ASN HIS SER ALA ALA PHE LYS LEU PRO SEQRES 22 A 283 ALA PHE LEU LEU LYS GLU ILE GLU ASN ILE SEQRES 1 B 283 GLY SER LYS LYS TRP PHE SER GLU PHE SER ILE MET TRP SEQRES 2 B 283 PRO GLY GLN ALA PHE SER LEU LYS ILE LYS LYS ILE LEU SEQRES 3 B 283 TYR GLU THR LYS SER LYS TYR GLN ASN VAL LEU VAL PHE SEQRES 4 B 283 GLU SER THR THR TYR GLY LYS VAL LEU VAL LEU ASP GLY SEQRES 5 B 283 VAL ILE GLN LEU THR GLU LYS ASP GLU PHE ALA TYR HIS SEQRES 6 B 283 GLU MET MET THR HIS VAL PRO MET THR VAL SER LYS GLU SEQRES 7 B 283 PRO LYS ASN VAL LEU VAL VAL GLY GLY GLY ASP GLY GLY SEQRES 8 B 283 ILE ILE ARG GLU LEU CYS LYS TYR LYS SER VAL GLU ASN SEQRES 9 B 283 ILE ASP ILE CYS GLU ILE ASP GLU THR VAL ILE GLU VAL SEQRES 10 B 283 SER LYS ILE TYR PHE LYS ASN ILE SER CYS GLY TYR GLU SEQRES 11 B 283 ASP LYS ARG VAL ASN VAL PHE ILE GLU ASP ALA SER LYS SEQRES 12 B 283 PHE LEU GLU ASN VAL THR ASN THR TYR ASP VAL ILE ILE SEQRES 13 B 283 VAL ASP SER SER ASP PRO ILE GLY PRO ALA GLU THR LEU SEQRES 14 B 283 PHE ASN GLN ASN PHE TYR GLU LYS ILE TYR ASN ALA LEU SEQRES 15 B 283 LYS PRO ASN GLY TYR CYS VAL ALA GLN CYS GLU SER LEU SEQRES 16 B 283 TRP ILE HIS VAL GLY THR ILE LYS ASN MET ILE GLY TYR SEQRES 17 B 283 ALA LYS LYS LEU PHE LYS LYS VAL GLU TYR ALA ASN ILE SEQRES 18 B 283 SER ILE PRO THR TYR PRO CYS GLY CYS ILE GLY ILE LEU SEQRES 19 B 283 CYS CYS SER LYS THR ASP THR GLY LEU THR LYS PRO ASN SEQRES 20 B 283 LYS LYS LEU GLU SER LYS GLU PHE ALA ASP LEU LYS TYR SEQRES 21 B 283 TYR ASN TYR GLU ASN HIS SER ALA ALA PHE LYS LEU PRO SEQRES 22 B 283 ALA PHE LEU LEU LYS GLU ILE GLU ASN ILE SEQRES 1 C 283 GLY SER LYS LYS TRP PHE SER GLU PHE SER ILE MET TRP SEQRES 2 C 283 PRO GLY GLN ALA PHE SER LEU LYS ILE LYS LYS ILE LEU SEQRES 3 C 283 TYR GLU THR LYS SER LYS TYR GLN ASN VAL LEU VAL PHE SEQRES 4 C 283 GLU SER THR THR TYR GLY LYS VAL LEU VAL LEU ASP GLY SEQRES 5 C 283 VAL ILE GLN LEU THR GLU LYS ASP GLU PHE ALA TYR HIS SEQRES 6 C 283 GLU MET MET THR HIS VAL PRO MET THR VAL SER LYS GLU SEQRES 7 C 283 PRO LYS ASN VAL LEU VAL VAL GLY GLY GLY ASP GLY GLY SEQRES 8 C 283 ILE ILE ARG GLU LEU CYS LYS TYR LYS SER VAL GLU ASN SEQRES 9 C 283 ILE ASP ILE CYS GLU ILE ASP GLU THR VAL ILE GLU VAL SEQRES 10 C 283 SER LYS ILE TYR PHE LYS ASN ILE SER CYS GLY TYR GLU SEQRES 11 C 283 ASP LYS ARG VAL ASN VAL PHE ILE GLU ASP ALA SER LYS SEQRES 12 C 283 PHE LEU GLU ASN VAL THR ASN THR TYR ASP VAL ILE ILE SEQRES 13 C 283 VAL ASP SER SER ASP PRO ILE GLY PRO ALA GLU THR LEU SEQRES 14 C 283 PHE ASN GLN ASN PHE TYR GLU LYS ILE TYR ASN ALA LEU SEQRES 15 C 283 LYS PRO ASN GLY TYR CYS VAL ALA GLN CYS GLU SER LEU SEQRES 16 C 283 TRP ILE HIS VAL GLY THR ILE LYS ASN MET ILE GLY TYR SEQRES 17 C 283 ALA LYS LYS LEU PHE LYS LYS VAL GLU TYR ALA ASN ILE SEQRES 18 C 283 SER ILE PRO THR TYR PRO CYS GLY CYS ILE GLY ILE LEU SEQRES 19 C 283 CYS CYS SER LYS THR ASP THR GLY LEU THR LYS PRO ASN SEQRES 20 C 283 LYS LYS LEU GLU SER LYS GLU PHE ALA ASP LEU LYS TYR SEQRES 21 C 283 TYR ASN TYR GLU ASN HIS SER ALA ALA PHE LYS LEU PRO SEQRES 22 C 283 ALA PHE LEU LEU LYS GLU ILE GLU ASN ILE HET 4ZY A 301 9 HET MTA A 401 20 HET GOL B 503 6 HET 4ZY B 301 9 HET MTA B 401 20 HET 1PG B 702 17 HET 4ZY C 301 9 HET MTA C 401 20 HET GOL C 502 6 HETNAM 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY} HETNAM 2 1PG -ETHOXY)-ETHANOL HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE HETNAM 4ZY 4-(AMINOMETHYL)ANILINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 1PG C11 H24 O6 FORMUL 5 MTA 3(C11 H15 N5 O3 S) FORMUL 6 4ZY 3(C7 H10 N2) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 8 HOH *426(H2 O) HELIX 1 1 ASP A 59 SER A 75 1 17 HELIX 2 2 GLY A 89 CYS A 96 1 8 HELIX 3 3 ASP A 110 PHE A 121 1 12 HELIX 4 4 PHE A 121 CYS A 126 1 6 HELIX 5 5 GLY A 127 ASP A 130 5 4 HELIX 6 6 ASP A 139 VAL A 147 1 9 HELIX 7 7 GLY A 163 PHE A 169 5 7 HELIX 8 8 ASN A 170 ALA A 180 1 11 HELIX 9 9 HIS A 197 LYS A 210 1 14 HELIX 10 10 TYR A 225 CYS A 227 5 3 HELIX 11 11 SER A 251 ALA A 255 5 5 HELIX 12 12 ASN A 261 ALA A 268 1 8 HELIX 13 13 PRO A 272 GLU A 280 1 9 HELIX 14 14 ASP B 59 THR B 73 1 15 HELIX 15 15 GLY B 89 CYS B 96 1 8 HELIX 16 16 ASP B 110 PHE B 121 1 12 HELIX 17 17 PHE B 121 CYS B 126 1 6 HELIX 18 18 GLY B 127 ASP B 130 5 4 HELIX 19 19 ASP B 139 LEU B 144 1 6 HELIX 20 20 GLY B 163 PHE B 169 5 7 HELIX 21 21 ASN B 170 ALA B 180 1 11 HELIX 22 22 HIS B 197 LYS B 210 1 14 HELIX 23 23 TYR B 225 CYS B 227 5 3 HELIX 24 24 SER B 251 ALA B 255 5 5 HELIX 25 25 ASN B 261 ALA B 268 1 8 HELIX 26 26 PRO B 272 GLU B 280 1 9 HELIX 27 27 ASP C 59 SER C 75 1 17 HELIX 28 28 GLY C 89 LYS C 97 1 9 HELIX 29 29 ASP C 110 PHE C 121 1 12 HELIX 30 30 PHE C 121 CYS C 126 1 6 HELIX 31 31 GLY C 127 ASP C 130 5 4 HELIX 32 32 ASP C 139 LEU C 144 1 6 HELIX 33 33 GLY C 163 PHE C 169 5 7 HELIX 34 34 ASN C 170 ALA C 180 1 11 HELIX 35 35 HIS C 197 LYS C 210 1 14 HELIX 36 36 TYR C 225 CYS C 227 5 3 HELIX 37 37 SER C 251 ALA C 255 5 5 HELIX 38 38 ASN C 261 ALA C 268 1 8 HELIX 39 39 PRO C 272 GLU C 280 1 9 SHEET 1 AA 5 TRP A 4 GLU A 7 0 SHEET 2 AA 5 PHE A 17 LYS A 29 -1 O PHE A 17 N GLU A 7 SHEET 3 AA 5 ASN A 34 SER A 40 -1 O VAL A 35 N THR A 28 SHEET 4 AA 5 LYS A 45 LEU A 49 -1 O VAL A 46 N PHE A 38 SHEET 5 AA 5 VAL A 52 THR A 56 -1 O VAL A 52 N LEU A 49 SHEET 1 AB 7 VAL A 133 ILE A 137 0 SHEET 2 AB 7 ASN A 103 GLU A 108 1 O ILE A 104 N ASN A 134 SHEET 3 AB 7 ASN A 80 GLY A 85 1 O VAL A 81 N ASP A 105 SHEET 4 AB 7 TYR A 151 ASP A 157 1 N ASP A 152 O ASN A 80 SHEET 5 AB 7 LEU A 181 GLN A 190 1 N LYS A 182 O TYR A 151 SHEET 6 AB 7 CYS A 229 SER A 236 -1 O LEU A 233 N ALA A 189 SHEET 7 AB 7 LYS A 214 SER A 221 -1 O LYS A 214 N SER A 236 SHEET 1 BA 2 TRP B 4 GLU B 7 0 SHEET 2 BA 2 GLN B 15 LYS B 29 -1 O PHE B 17 N GLU B 7 SHEET 1 BB 8 VAL B 52 THR B 56 0 SHEET 2 BB 8 LYS B 45 LEU B 49 -1 O LEU B 47 N GLN B 54 SHEET 3 BB 8 ASN B 34 SER B 40 -1 O LEU B 36 N VAL B 48 SHEET 4 BB 8 GLN B 15 LYS B 29 -1 N LYS B 22 O GLU B 39 SHEET 5 BB 8 GLN C 15 LYS C 29 -1 O ALA C 16 N SER B 18 SHEET 6 BB 8 ASN C 34 SER C 40 -1 O VAL C 35 N THR C 28 SHEET 7 BB 8 LYS C 45 LEU C 49 -1 O VAL C 46 N PHE C 38 SHEET 8 BB 8 VAL C 52 THR C 56 -1 O VAL C 52 N LEU C 49 SHEET 1 BC 5 VAL B 52 THR B 56 0 SHEET 2 BC 5 LYS B 45 LEU B 49 -1 O LEU B 47 N GLN B 54 SHEET 3 BC 5 ASN B 34 SER B 40 -1 O LEU B 36 N VAL B 48 SHEET 4 BC 5 GLN B 15 LYS B 29 -1 N LYS B 22 O GLU B 39 SHEET 5 BC 5 TRP B 4 GLU B 7 -1 O PHE B 5 N LEU B 19 SHEET 1 CA 2 TRP C 4 GLU C 7 0 SHEET 2 CA 2 GLN C 15 LYS C 29 1 O PHE C 17 N GLU C 7 SHEET 1 BD 6 VAL B 52 THR B 56 0 SHEET 2 BD 6 LYS B 45 LEU B 49 -1 O LEU B 47 N GLN B 54 SHEET 3 BD 6 ASN B 34 SER B 40 -1 O LEU B 36 N VAL B 48 SHEET 4 BD 6 GLN B 15 LYS B 29 -1 N LYS B 22 O GLU B 39 SHEET 5 BD 6 GLN C 15 LYS C 29 -1 O ALA C 16 N SER B 18 SHEET 6 BD 6 TRP C 4 GLU C 7 1 O PHE C 5 N LEU C 19 SHEET 1 BE 7 VAL B 133 ILE B 137 0 SHEET 2 BE 7 ASN B 103 GLU B 108 1 O ILE B 104 N ASN B 134 SHEET 3 BE 7 ASN B 80 GLY B 85 1 O VAL B 81 N ASP B 105 SHEET 4 BE 7 TYR B 151 ASP B 157 1 N ASP B 152 O ASN B 80 SHEET 5 BE 7 LEU B 181 GLN B 190 1 N LYS B 182 O TYR B 151 SHEET 6 BE 7 CYS B 229 SER B 236 -1 O LEU B 233 N ALA B 189 SHEET 7 BE 7 LYS B 214 SER B 221 -1 O LYS B 214 N SER B 236 SHEET 1 CB 7 VAL C 133 ILE C 137 0 SHEET 2 CB 7 ASN C 103 GLU C 108 1 O ILE C 104 N ASN C 134 SHEET 3 CB 7 ASN C 80 GLY C 85 1 O VAL C 81 N ASP C 105 SHEET 4 CB 7 TYR C 151 ASP C 157 1 N ASP C 152 O ASN C 80 SHEET 5 CB 7 LEU C 181 GLN C 190 1 N LYS C 182 O TYR C 151 SHEET 6 CB 7 CYS C 229 SER C 236 -1 O LEU C 233 N ALA C 189 SHEET 7 CB 7 LYS C 214 SER C 221 -1 O LYS C 214 N SER C 236 SITE 1 AC1 11 ILE A 53 GLN A 54 TYR A 63 ASP A 157 SITE 2 AC1 11 SER A 158 ASP A 160 GLN A 190 TYR A 225 SITE 3 AC1 11 HOH A2008 HOH A2030 HOH A2070 SITE 1 AC2 18 GLN A 33 GLN A 54 GLY A 85 GLY A 86 SITE 2 AC2 18 ASP A 88 CYS A 107 GLU A 108 ILE A 109 SITE 3 AC2 18 VAL A 113 ASP A 139 ALA A 140 ASP A 157 SITE 4 AC2 18 SER A 158 SER A 159 PRO A 164 ALA A 165 SITE 5 AC2 18 THR A 167 LEU A 168 SITE 1 AC3 5 TRP B 195 PHE B 274 HOH B3107 LYS C 58 SITE 2 AC3 5 LYS C 258 SITE 1 AC4 12 ILE B 53 GLN B 54 TYR B 63 ASP B 157 SITE 2 AC4 12 SER B 158 ASP B 160 GLN B 190 TYR B 225 SITE 3 AC4 12 MTA B 401 HOH B2008 HOH B2032 HOH B2096 SITE 1 AC5 18 GLN B 33 GLY B 85 GLY B 86 ASP B 88 SITE 2 AC5 18 CYS B 107 GLU B 108 ILE B 109 VAL B 113 SITE 3 AC5 18 ASP B 139 ALA B 140 ASP B 157 SER B 158 SITE 4 AC5 18 SER B 159 PRO B 164 ALA B 165 THR B 167 SITE 5 AC5 18 LEU B 168 4ZY B 301 SITE 1 AC6 7 TRP B 4 SER B 6 SER B 18 TRP C 4 SITE 2 AC6 7 SER C 6 PHE C 8 SER C 18 SITE 1 AC7 11 ILE C 53 GLN C 54 TYR C 63 ASP C 157 SITE 2 AC7 11 SER C 158 ASP C 160 TYR C 225 MTA C 401 SITE 3 AC7 11 HOH C2008 HOH C2037 HOH C2094 SITE 1 AC8 19 GLN C 33 LEU C 49 GLN C 54 GLY C 85 SITE 2 AC8 19 GLY C 86 ASP C 88 CYS C 107 GLU C 108 SITE 3 AC8 19 ILE C 109 VAL C 113 ASP C 139 ALA C 140 SITE 4 AC8 19 ASP C 157 SER C 158 SER C 159 PRO C 164 SITE 5 AC8 19 ALA C 165 THR C 167 4ZY C 301 SITE 1 AC9 6 LYS B 58 PHE B 61 LYS B 258 HOH B2037 SITE 2 AC9 6 TRP C 195 HOH C2114 CRYST1 198.050 134.616 48.306 90.00 95.33 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005049 0.000000 0.000471 0.00000 SCALE2 0.000000 0.007429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020791 0.00000