HEADER HYDROLASE 21-MAY-13 4BOL TITLE CRYSTAL STRUCTURE OF AMPDH2 FROM PSEUDOMONAS AERUGINOSA IN TITLE 2 COMPLEX WITH PENTAPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMPDH2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ARTOLA-RECOLONS,S.MARTINEZ-CABALLERO,M.LEE,C.CARRASCO-LOPEZ, AUTHOR 2 D.HESEK,E.E.SPINK,E.LASTOCHKIN,W.ZHANG,L.M.HELLMAN,B.BOGGESS, AUTHOR 3 S.MOBASHERY,J.A.HERMOSO REVDAT 3 31-JUL-13 4BOL 1 JRNL REVDAT 2 24-JUL-13 4BOL 1 ATOM ANISOU REVDAT 1 17-JUL-13 4BOL 0 JRNL AUTH S.MARTINEZ-CABALLERO,M.LEE,C.ARTOLA-RECOLONS, JRNL AUTH 2 C.CARRASCO-LOPEZ,D.HESEK,E.E.SPINK,E.LASTOCHKIN,W.ZHANG, JRNL AUTH 3 L.M.HELLMAN,B.BOGGESS,S.MOBASHERY,J.A.HERMOSO JRNL TITL REACTION PRODUCTS AND THE X-RAY STRUCTURE OF AMPDH2, A JRNL TITL 2 VIRULENCE DETERMINANT OF PSEUDOMONAS AERUGINOSA. JRNL REF J.AM.CHEM.SOC. V. 135 10318 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23819763 JRNL DOI 10.1021/JA405464B REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.700 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.912 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.33 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.98 REMARK 3 NUMBER OF REFLECTIONS : 54028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1490 REMARK 3 R VALUE (WORKING SET) : 0.1474 REMARK 3 FREE R VALUE : 0.1783 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9292 - 4.6131 1.00 2766 160 0.1573 0.1642 REMARK 3 2 4.6131 - 3.6620 1.00 2608 159 0.1220 0.1384 REMARK 3 3 3.6620 - 3.1992 1.00 2633 115 0.1374 0.1524 REMARK 3 4 3.1992 - 2.9068 1.00 2584 158 0.1525 0.1915 REMARK 3 5 2.9068 - 2.6985 1.00 2583 132 0.1572 0.1701 REMARK 3 6 2.6985 - 2.5394 1.00 2572 139 0.1498 0.2142 REMARK 3 7 2.5394 - 2.4122 1.00 2543 141 0.1406 0.1790 REMARK 3 8 2.4122 - 2.3072 1.00 2577 123 0.1421 0.1998 REMARK 3 9 2.3072 - 2.2184 1.00 2559 126 0.1376 0.1976 REMARK 3 10 2.2184 - 2.1418 1.00 2552 141 0.1427 0.1838 REMARK 3 11 2.1418 - 2.0749 1.00 2520 144 0.1497 0.2188 REMARK 3 12 2.0749 - 2.0156 1.00 2555 133 0.1495 0.2057 REMARK 3 13 2.0156 - 1.9625 1.00 2564 120 0.1467 0.1988 REMARK 3 14 1.9625 - 1.9146 1.00 2520 147 0.1482 0.1920 REMARK 3 15 1.9146 - 1.8711 1.00 2517 147 0.1569 0.2037 REMARK 3 16 1.8711 - 1.8313 1.00 2501 139 0.1611 0.1902 REMARK 3 17 1.8313 - 1.7946 1.00 2563 128 0.1706 0.2283 REMARK 3 18 1.7946 - 1.7608 1.00 2520 120 0.1883 0.2286 REMARK 3 19 1.7608 - 1.7293 1.00 2552 136 0.2168 0.2419 REMARK 3 20 1.7293 - 1.7000 1.00 2492 139 0.2257 0.2608 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.17 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4040 REMARK 3 ANGLE : 1.368 5512 REMARK 3 CHIRALITY : 0.079 590 REMARK 3 PLANARITY : 0.007 730 REMARK 3 DIHEDRAL : 12.783 1486 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 17 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9473 17.3060 -41.7299 REMARK 3 T TENSOR REMARK 3 T11: 0.4615 T22: 0.1371 REMARK 3 T33: 0.5011 T12: 0.0246 REMARK 3 T13: 0.1528 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.6434 L22: 2.5361 REMARK 3 L33: 1.7364 L12: 1.2135 REMARK 3 L13: -0.5676 L23: -1.1144 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: -0.0438 S13: 0.6547 REMARK 3 S21: -0.3590 S22: -0.0135 S23: -0.3839 REMARK 3 S31: -0.5513 S32: -0.0611 S33: -0.1280 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 38 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5130 -1.0922 -16.3490 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.1925 REMARK 3 T33: 0.1190 T12: 0.0155 REMARK 3 T13: 0.0078 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.0615 L22: 1.4586 REMARK 3 L33: 1.8466 L12: 0.1899 REMARK 3 L13: -0.8034 L23: 0.5698 REMARK 3 S TENSOR REMARK 3 S11: 0.0556 S12: -0.3182 S13: 0.0500 REMARK 3 S21: 0.1922 S22: 0.0116 S23: 0.0774 REMARK 3 S31: 0.0154 S32: 0.1428 S33: -0.0911 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 186 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2995 -19.7161 -25.7389 REMARK 3 T TENSOR REMARK 3 T11: 0.2330 T22: 0.1709 REMARK 3 T33: 0.2351 T12: -0.0209 REMARK 3 T13: 0.0189 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.6231 L22: 2.5346 REMARK 3 L33: 2.9385 L12: 0.5727 REMARK 3 L13: -0.6454 L23: 0.6065 REMARK 3 S TENSOR REMARK 3 S11: -0.0911 S12: 0.0488 S13: -0.3682 REMARK 3 S21: 0.1200 S22: 0.0342 S23: 0.1502 REMARK 3 S31: 0.4971 S32: -0.2589 S33: 0.1223 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 17 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3696 11.7907 -17.4065 REMARK 3 T TENSOR REMARK 3 T11: 0.3681 T22: 0.2503 REMARK 3 T33: 0.2739 T12: -0.0512 REMARK 3 T13: 0.0359 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 2.4395 L22: 2.3825 REMARK 3 L33: 5.2403 L12: -0.4733 REMARK 3 L13: -1.8967 L23: 2.2722 REMARK 3 S TENSOR REMARK 3 S11: 0.1682 S12: -0.2402 S13: 0.4719 REMARK 3 S21: 0.1034 S22: 0.0595 S23: -0.0485 REMARK 3 S31: -0.7281 S32: 0.2439 S33: -0.2278 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 38 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4949 7.8596 -45.3651 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.1151 REMARK 3 T33: 0.1865 T12: 0.0050 REMARK 3 T13: 0.0363 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 2.0887 L22: 1.6736 REMARK 3 L33: 2.4457 L12: -0.1526 REMARK 3 L13: -0.5039 L23: -0.2574 REMARK 3 S TENSOR REMARK 3 S11: 0.1210 S12: 0.1792 S13: 0.4011 REMARK 3 S21: -0.1170 S22: 0.0487 S23: 0.0874 REMARK 3 S31: -0.4202 S32: -0.0401 S33: -0.1354 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 108 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3760 0.4180 -62.6031 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.3026 REMARK 3 T33: 0.2357 T12: 0.0289 REMARK 3 T13: -0.0127 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 6.1605 L22: 6.8953 REMARK 3 L33: 7.5280 L12: 0.2450 REMARK 3 L13: 0.1938 L23: 2.4706 REMARK 3 S TENSOR REMARK 3 S11: 0.3050 S12: 0.7736 S13: -0.4736 REMARK 3 S21: -0.5633 S22: -0.0419 S23: 0.0704 REMARK 3 S31: -0.1634 S32: -0.1044 S33: -0.2413 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 126 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2569 11.8856 -42.1601 REMARK 3 T TENSOR REMARK 3 T11: 0.3000 T22: 0.2287 REMARK 3 T33: 0.3819 T12: -0.1230 REMARK 3 T13: 0.0789 T23: -0.0831 REMARK 3 L TENSOR REMARK 3 L11: 2.0791 L22: 1.6375 REMARK 3 L33: 5.5351 L12: 0.1295 REMARK 3 L13: -1.2394 L23: -1.2128 REMARK 3 S TENSOR REMARK 3 S11: 0.2667 S12: -0.2206 S13: 0.5675 REMARK 3 S21: -0.0762 S22: 0.1350 S23: -0.1834 REMARK 3 S31: -0.5775 S32: 0.5549 S33: -0.3008 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 144 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5917 -1.7737 -45.5676 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.1233 REMARK 3 T33: 0.1631 T12: 0.0031 REMARK 3 T13: 0.0135 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 2.7006 L22: 1.6091 REMARK 3 L33: 2.6094 L12: -0.4184 REMARK 3 L13: -1.1186 L23: -0.3094 REMARK 3 S TENSOR REMARK 3 S11: -0.0783 S12: -0.0157 S13: 0.0907 REMARK 3 S21: -0.0361 S22: 0.0309 S23: -0.0489 REMARK 3 S31: -0.0515 S32: 0.0590 S33: 0.0295 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 170 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1255 0.0102 -43.7497 REMARK 3 T TENSOR REMARK 3 T11: 0.1600 T22: 0.3100 REMARK 3 T33: 0.2936 T12: -0.0315 REMARK 3 T13: 0.0219 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 5.3381 L22: 3.3107 REMARK 3 L33: 1.9605 L12: -1.9524 REMARK 3 L13: -0.5660 L23: 1.2160 REMARK 3 S TENSOR REMARK 3 S11: -0.2964 S12: -0.4435 S13: 0.1736 REMARK 3 S21: -0.0069 S22: 0.1892 S23: -0.5833 REMARK 3 S31: -0.0853 S32: 0.7544 S33: 0.0795 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 186 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9815 -19.9635 -44.0714 REMARK 3 T TENSOR REMARK 3 T11: 0.2649 T22: 0.3624 REMARK 3 T33: 0.3706 T12: 0.1023 REMARK 3 T13: 0.0469 T23: 0.0489 REMARK 3 L TENSOR REMARK 3 L11: 5.6811 L22: 3.3301 REMARK 3 L33: 3.1774 L12: 1.2811 REMARK 3 L13: 0.1769 L23: 1.4869 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.1192 S13: -0.5514 REMARK 3 S21: 0.3392 S22: 0.0193 S23: -0.7088 REMARK 3 S31: 0.4652 S32: 0.7551 S33: 0.0469 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 201 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8922 -15.5581 -46.6044 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1261 REMARK 3 T33: 0.1706 T12: 0.0150 REMARK 3 T13: 0.0159 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 3.1652 L22: 2.5303 REMARK 3 L33: 2.9944 L12: -0.7147 REMARK 3 L13: -0.9863 L23: -0.5538 REMARK 3 S TENSOR REMARK 3 S11: -0.0956 S12: 0.0502 S13: -0.3587 REMARK 3 S21: -0.0242 S22: 0.0043 S23: 0.1058 REMARK 3 S31: 0.2752 S32: 0.0613 S33: 0.0646 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-13. REMARK 100 THE PDBE ID CODE IS EBI-56927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0064 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54041 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.70 REMARK 200 RESOLUTION RANGE LOW (A) : 47.63 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.1 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.5 REMARK 200 R MERGE FOR SHELL (I) : 0.94 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.14 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.1M BISTRIS REMARK 280 PROPANE PH7.0, 0.2M POTASSIUM THIOCYANATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.81500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.08450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.61700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.08450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.81500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.61700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 PHE A 4 REMARK 465 VAL A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 PHE A 9 REMARK 465 THR A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 3 REMARK 465 PHE B 4 REMARK 465 VAL B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 ALA B 8 REMARK 465 PHE B 9 REMARK 465 THR B 10 REMARK 465 LEU B 11 REMARK 465 SER B 12 REMARK 465 LEU B 13 REMARK 465 LEU B 14 REMARK 465 ALA B 15 REMARK 465 GLY B 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 115 O GLY A 118 1.58 REMARK 500 NH2 ARG A 226 O HOH A 2215 2.11 REMARK 500 HH21 ARG A 226 O HOH A 2215 1.27 REMARK 500 OD1 ASP B 138 O HOH B 2117 2.17 REMARK 500 H SER B 259 O HOH B 2121 1.43 REMARK 500 O HOH A 2033 O HOH B 2078 2.18 REMARK 500 O HOH A 2214 O HOH A 2215 1.85 REMARK 500 O HOH B 2095 O HOH B 2096 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 18 99.48 -165.73 REMARK 500 ARG A 22 85.16 42.28 REMARK 500 ASP A 33 -156.58 -156.43 REMARK 500 ARG A 237 55.86 -145.91 REMARK 500 ASP B 33 -158.55 -152.92 REMARK 500 HIS B 57 11.83 -147.91 REMARK 500 ARG B 237 57.69 -149.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1261 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 ND1 REMARK 620 2 HIS A 42 ND1 95.4 REMARK 620 3 ASP A 163 OD2 124.2 101.3 REMARK 620 4 HOH A2025 O 102.9 127.3 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1260 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 42 ND1 REMARK 620 2 HIS B 153 ND1 94.2 REMARK 620 3 ASP B 163 OD2 104.4 125.9 REMARK 620 4 HOH B2021 O 121.7 104.5 107.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J0J A1260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J0J B1261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1261 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BPA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AMPDH2 FROM PSEUDOMONAS AERUGINOSA REMARK 900 IN COMPLEX WITH NAG-NAM-NAG-NAM TETRASACCHARIDE DBREF 4BOL A 1 259 UNP Q9HT86 Q9HT86_PSEAE 1 259 DBREF 4BOL B 1 259 UNP Q9HT86 Q9HT86_PSEAE 1 259 SEQADV 4BOL MET A 17 UNP Q9HT86 CYS 17 ENGINEERED MUTATION SEQADV 4BOL MET B 17 UNP Q9HT86 CYS 17 ENGINEERED MUTATION SEQRES 1 A 259 MET ARG SER PHE VAL LEU LEU ALA PHE THR LEU SER LEU SEQRES 2 A 259 LEU ALA GLY MET SER SER GLY PRO ARG LEU ASN THR ASP SEQRES 3 A 259 TYR THR SER ALA ASN GLN ASP SER ARG VAL GLN PHE ILE SEQRES 4 A 259 VAL LEU HIS TYR THR SER THR ASP LEU PRO HIS SER LEU SEQRES 5 A 259 GLY ILE LEU THR HIS GLY GLY VAL SER ALA HIS TYR LEU SEQRES 6 A 259 ILE GLY ASP ASP GLU PRO ALA THR VAL TYR ARG LEU VAL SEQRES 7 A 259 ASP GLU ASN ARG ARG ALA TRP HIS ALA GLY VAL SER GLU SEQRES 8 A 259 TRP GLN GLY ARG THR TRP LEU ASN ALA THR SER ILE GLY SEQRES 9 A 259 ILE GLU ILE VAL ASN GLN GLY TYR ARG ASP THR PRO GLN SEQRES 10 A 259 GLY ARG VAL TRP TYR PRO PHE SER GLU ALA GLN ILE GLN SEQRES 11 A 259 ALA LEU ILE PRO LEU LEU LYS ASP ILE ALA LYS ARG HIS SEQRES 12 A 259 GLY ILE THR PRO ASP ARG ILE ILE GLY HIS SER ASP ILE SEQRES 13 A 259 ALA PRO GLY ARG LYS VAL ASP PRO GLY PRO LEU PHE PRO SEQRES 14 A 259 TRP LYS ARG LEU ALA ASP ALA GLY LEU VAL PRO TRP PRO SEQRES 15 A 259 LYS PRO GLY GLU LEU ALA ARG ARG LEU ALA GLU LEU ASN SEQRES 16 A 259 GLY GLN LEU PRO ASP VAL ARG TRP PHE GLN GLN GLN LEU SEQRES 17 A 259 ALA ARG HIS GLY TYR LEU VAL PRO GLN THR GLY GLU LEU SEQRES 18 A 259 GLU LYS ASP THR ARG ASP VAL ILE GLY ALA PHE GLN MET SEQRES 19 A 259 LYS TYR ARG PRO ALA ARG PHE ASP GLY GLU PRO ASP LEU SEQRES 20 A 259 GLU THR ALA ALA LEU LEU LEU ALA VAL PRO THR SER SEQRES 1 B 259 MET ARG SER PHE VAL LEU LEU ALA PHE THR LEU SER LEU SEQRES 2 B 259 LEU ALA GLY MET SER SER GLY PRO ARG LEU ASN THR ASP SEQRES 3 B 259 TYR THR SER ALA ASN GLN ASP SER ARG VAL GLN PHE ILE SEQRES 4 B 259 VAL LEU HIS TYR THR SER THR ASP LEU PRO HIS SER LEU SEQRES 5 B 259 GLY ILE LEU THR HIS GLY GLY VAL SER ALA HIS TYR LEU SEQRES 6 B 259 ILE GLY ASP ASP GLU PRO ALA THR VAL TYR ARG LEU VAL SEQRES 7 B 259 ASP GLU ASN ARG ARG ALA TRP HIS ALA GLY VAL SER GLU SEQRES 8 B 259 TRP GLN GLY ARG THR TRP LEU ASN ALA THR SER ILE GLY SEQRES 9 B 259 ILE GLU ILE VAL ASN GLN GLY TYR ARG ASP THR PRO GLN SEQRES 10 B 259 GLY ARG VAL TRP TYR PRO PHE SER GLU ALA GLN ILE GLN SEQRES 11 B 259 ALA LEU ILE PRO LEU LEU LYS ASP ILE ALA LYS ARG HIS SEQRES 12 B 259 GLY ILE THR PRO ASP ARG ILE ILE GLY HIS SER ASP ILE SEQRES 13 B 259 ALA PRO GLY ARG LYS VAL ASP PRO GLY PRO LEU PHE PRO SEQRES 14 B 259 TRP LYS ARG LEU ALA ASP ALA GLY LEU VAL PRO TRP PRO SEQRES 15 B 259 LYS PRO GLY GLU LEU ALA ARG ARG LEU ALA GLU LEU ASN SEQRES 16 B 259 GLY GLN LEU PRO ASP VAL ARG TRP PHE GLN GLN GLN LEU SEQRES 17 B 259 ALA ARG HIS GLY TYR LEU VAL PRO GLN THR GLY GLU LEU SEQRES 18 B 259 GLU LYS ASP THR ARG ASP VAL ILE GLY ALA PHE GLN MET SEQRES 19 B 259 LYS TYR ARG PRO ALA ARG PHE ASP GLY GLU PRO ASP LEU SEQRES 20 B 259 GLU THR ALA ALA LEU LEU LEU ALA VAL PRO THR SER HET ZN B1260 1 HET J0J A1260 60 HET J0J B1261 60 HET ZN A1261 1 HETNAM J0J D-ALANYL-N-[(2S,6R)-6-AMINO-6-CARBOXY-1- HETNAM 2 J0J {[(1R)-1-CARBOXYETHYL]AMINO}-1-OXOHEXAN-2-YL]-D- HETNAM 3 J0J GLUTAMINE HETNAM ZN ZINC ION FORMUL 3 J0J 2(C18 H31 N5 O9) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 HOH *464(H2 O) HELIX 1 1 ASP A 47 GLY A 58 1 12 HELIX 2 2 LEU A 98 ALA A 100 5 3 HELIX 3 3 SER A 125 GLY A 144 1 20 HELIX 4 4 THR A 146 ASP A 148 5 3 HELIX 5 5 HIS A 153 ALA A 157 1 5 HELIX 6 6 PRO A 169 ALA A 176 1 8 HELIX 7 7 GLY A 185 ASN A 195 1 11 HELIX 8 8 ASP A 200 GLY A 212 1 13 HELIX 9 9 GLU A 222 ARG A 237 1 16 HELIX 10 10 ASP A 246 VAL A 256 1 11 HELIX 11 11 ASP B 47 GLY B 58 1 12 HELIX 12 12 LEU B 98 ALA B 100 5 3 HELIX 13 13 SER B 125 GLY B 144 1 20 HELIX 14 14 THR B 146 ASP B 148 5 3 HELIX 15 15 HIS B 153 ALA B 157 1 5 HELIX 16 16 PRO B 169 ALA B 176 1 8 HELIX 17 17 GLY B 185 ASN B 195 1 11 HELIX 18 18 ASP B 200 GLY B 212 1 13 HELIX 19 19 GLU B 222 ARG B 237 1 16 HELIX 20 20 ASP B 246 VAL B 256 1 11 SHEET 1 AA 2 GLN A 32 SER A 34 0 SHEET 2 AA 2 ARG B 82 ALA B 84 -1 O ARG B 83 N ASP A 33 SHEET 1 AB 5 VAL A 74 ARG A 76 0 SHEET 2 AB 5 TYR A 64 ILE A 66 -1 O LEU A 65 N TYR A 75 SHEET 3 AB 5 SER A 102 ILE A 107 1 O GLY A 104 N TYR A 64 SHEET 4 AB 5 PHE A 38 TYR A 43 1 O PHE A 38 N ILE A 103 SHEET 5 AB 5 ILE A 150 GLY A 152 1 O ILE A 151 N LEU A 41 SHEET 1 AC 2 ARG A 82 ALA A 84 0 SHEET 2 AC 2 GLN B 32 SER B 34 -1 O ASP B 33 N ARG A 83 SHEET 1 AD 2 GLU A 91 TRP A 92 0 SHEET 2 AD 2 ARG A 95 THR A 96 -1 O ARG A 95 N TRP A 92 SHEET 1 AE 2 TYR A 112 ASP A 114 0 SHEET 2 AE 2 ARG A 119 TRP A 121 -1 O VAL A 120 N ARG A 113 SHEET 1 BA 5 VAL B 74 ARG B 76 0 SHEET 2 BA 5 TYR B 64 ILE B 66 -1 O LEU B 65 N TYR B 75 SHEET 3 BA 5 SER B 102 ILE B 107 1 O GLY B 104 N TYR B 64 SHEET 4 BA 5 PHE B 38 TYR B 43 1 O PHE B 38 N ILE B 103 SHEET 5 BA 5 ILE B 150 GLY B 152 1 O ILE B 151 N LEU B 41 SHEET 1 BB 2 GLU B 91 TRP B 92 0 SHEET 2 BB 2 ARG B 95 THR B 96 -1 O ARG B 95 N TRP B 92 SHEET 1 BC 2 TYR B 112 THR B 115 0 SHEET 2 BC 2 GLY B 118 TRP B 121 -1 O GLY B 118 N THR B 115 LINK ZN ZN A1261 ND1 HIS A 153 1555 1555 2.12 LINK ZN ZN A1261 ND1 HIS A 42 1555 1555 2.01 LINK ZN ZN A1261 OD2 ASP A 163 1555 1555 2.09 LINK ZN ZN A1261 O HOH A2025 1555 1555 2.05 LINK ZN ZN B1260 ND1 HIS B 153 1555 1555 2.12 LINK ZN ZN B1260 OD2 ASP B 163 1555 1555 2.06 LINK ZN ZN B1260 O HOH B2021 1555 1555 2.10 LINK ZN ZN B1260 ND1 HIS B 42 1555 1555 2.04 CISPEP 1 MET A 17 SER A 18 0 3.68 CISPEP 2 GLU A 70 PRO A 71 0 -2.83 CISPEP 3 ASP A 163 PRO A 164 0 5.91 CISPEP 4 GLU B 70 PRO B 71 0 -3.40 CISPEP 5 ASP B 163 PRO B 164 0 6.64 SITE 1 AC1 4 HIS B 42 HIS B 153 ASP B 163 HOH B2021 SITE 1 AC2 22 VAL A 60 ARG A 83 TRP A 85 HIS A 86 SITE 2 AC2 22 ALA A 87 GLY A 88 TRP A 97 ASN A 99 SITE 3 AC2 22 GLU A 106 HIS A 153 ARG A 160 PRO A 184 SITE 4 AC2 22 HOH A2025 HOH A2046 HOH A2080 HOH A2081 SITE 5 AC2 22 HOH A2082 HOH A2083 HOH A2087 HOH A2239 SITE 6 AC2 22 HOH A2240 ARG B 95 SITE 1 AC3 23 ARG A 95 HOH A2008 HOH A2019 HOH A2105 SITE 2 AC3 23 VAL B 60 ARG B 83 TRP B 85 HIS B 86 SITE 3 AC3 23 ALA B 87 GLY B 88 TRP B 97 ASN B 99 SITE 4 AC3 23 GLU B 106 HIS B 153 ARG B 160 LYS B 161 SITE 5 AC3 23 HOH B2021 HOH B2063 HOH B2064 HOH B2068 SITE 6 AC3 23 HOH B2222 HOH B2223 HOH B2224 SITE 1 AC4 4 HIS A 42 HIS A 153 ASP A 163 HOH A2025 CRYST1 47.630 97.234 104.169 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020995 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009600 0.00000