HEADER APOPTOSIS 27-MAY-13 4BPJ TITLE MCL-1 BOUND TO ALPHA BETA PUMA BH3 PEPTIDE 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION PROTEIN CONSISTING OF INDUCED MYELOID LEUKEMIA CELL COMPND 3 DIFFERENTIATION PROTEIN MCL-1 HOMOLOG; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: FUSION PROTEIN OF MOUSE MCL-1, RESIDUES 152-189 AND HUMAN COMPND 6 MCL-1 RESIDUES, 209-327; COMPND 7 SYNONYM: BCL-2-RELATED PROTEIN EAT/MCL1, BCL-2-LIKE PROTEIN 3, BCL2- COMPND 8 L-3, BCL-2-RELATED PROTEIN EAT/MCL1, MCL1/EAT, MCL-1 BCL-2-LIKE COMPND 9 PROTEIN 3, BCL2-L-3, BCL-2-RELATED PROTEIN EAT/MCL1, MCL1/EAT; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: ALPHA BETA BH3-PEPTIDE; COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE, HUMAN; SOURCE 4 ORGANISM_TAXID: 10090, 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P3; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS APOPTOSIS, CHIMERA, BIM EXPDTA X-RAY DIFFRACTION AUTHOR B.J.SMITH,E.F.LEE,J.W.CHECCO,S.H.GELLMAN,W.D.FAIRLIE REVDAT 8 15-MAY-24 4BPJ 1 REMARK REVDAT 7 20-DEC-23 4BPJ 1 REMARK REVDAT 6 15-NOV-23 4BPJ 1 LINK ATOM REVDAT 5 27-SEP-23 4BPJ 1 REMARK LINK REVDAT 4 10-JUL-19 4BPJ 1 REMARK REVDAT 3 24-APR-19 4BPJ 1 REMARK SEQRES LINK REVDAT 2 15-MAR-17 4BPJ 1 SOURCE REVDAT 1 09-APR-14 4BPJ 0 JRNL AUTH B.J.SMITH,E.F.LEE,J.W.CHECCO,M.EVANGELISTA,S.H.GELLMAN, JRNL AUTH 2 W.D.FAIRLIE JRNL TITL STRUCTURE-GUIDED RATIONAL DESIGN OF ALPHA/BETA-PEPTIDE JRNL TITL 2 FOLDAMERS WITH HIGH AFFINITY FOR BCL-2 FAMILY PROSURVIVAL JRNL TITL 3 PROTEINS. JRNL REF CHEMBIOCHEM V. 14 1564 2013 JRNL REFN ISSN 1439-4227 JRNL PMID 23929624 JRNL DOI 10.1002/CBIC.201300351 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6947 - 3.3220 0.98 2562 135 0.1951 0.2192 REMARK 3 2 3.3220 - 2.6388 1.00 2553 135 0.1999 0.2171 REMARK 3 3 2.6388 - 2.3058 1.00 2564 135 0.1894 0.2266 REMARK 3 4 2.3058 - 2.0952 0.99 2553 134 0.1840 0.2354 REMARK 3 5 2.0952 - 1.9452 1.00 2542 134 0.1982 0.2359 REMARK 3 6 1.9452 - 1.8306 1.00 2549 134 0.2071 0.2457 REMARK 3 7 1.8306 - 1.7390 1.00 2559 135 0.2195 0.2598 REMARK 3 8 1.7390 - 1.6633 1.00 2537 133 0.2373 0.2727 REMARK 3 9 1.6633 - 1.5993 0.97 2443 129 0.2607 0.3093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1451 REMARK 3 ANGLE : 1.089 1964 REMARK 3 CHIRALITY : 0.074 213 REMARK 3 PLANARITY : 0.004 258 REMARK 3 DIHEDRAL : 14.115 559 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 13.0196 18.1289 8.5538 REMARK 3 T TENSOR REMARK 3 T11: 0.1140 T22: 0.1808 REMARK 3 T33: 0.1086 T12: -0.0088 REMARK 3 T13: 0.0102 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.4029 L22: 3.0402 REMARK 3 L33: 3.3464 L12: -0.9281 REMARK 3 L13: 0.1099 L23: -0.5276 REMARK 3 S TENSOR REMARK 3 S11: -0.1078 S12: -0.0913 S13: -0.1194 REMARK 3 S21: 0.1198 S22: 0.0015 S23: -0.1602 REMARK 3 S31: 0.1990 S32: 0.2212 S33: 0.0675 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.26511 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24069 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 19.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.570 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.75 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NL9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M IMADAZOLE, PH7.0 0.2M ZINC REMARK 280 ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.22900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.22900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -379.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A1329 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2023 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 166 REMARK 465 PRO A 167 REMARK 465 LEU A 168 REMARK 465 GLY A 169 REMARK 465 SER A 170 REMARK 465 ASP A 195 REMARK 465 SER A 196 REMARK 465 LYS A 197 REMARK 465 PRO A 198 REMARK 465 LEU A 199 REMARK 465 GLY A 200 REMARK 465 GLU A 201 REMARK 465 ALA A 202 REMARK 465 ASP A 323 REMARK 465 LEU A 324 REMARK 465 GLU A 325 REMARK 465 GLY A 326 REMARK 465 GLY A 327 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 173 CG OD1 OD2 REMARK 480 ARG A 207 NE CZ NH1 NH2 REMARK 480 ARG A 208 NH1 NH2 REMARK 480 GLU A 211 CG CD OE1 OE2 REMARK 480 LYS A 238 CG CD CE NZ REMARK 480 ASN A 239 CG OD1 ND2 REMARK 480 ASP A 241 CB CG OD1 OD2 REMARK 480 ASP A 242 CG OD1 OD2 REMARK 480 LYS A 244 CB CG CD CE NZ REMARK 480 GLN A 283 CG CD OE1 NE2 REMARK 480 GLU A 284 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 247 OG SER A 293 2.13 REMARK 500 O GLU A 240 N ASP A 242 2.18 REMARK 500 OD2 ASP A 236 O HOH A 2215 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 239 -79.88 -140.02 REMARK 500 GLU A 240 -149.29 38.81 REMARK 500 ASP A 241 -40.65 49.86 REMARK 500 VAL A 321 -111.81 60.63 REMARK 500 HR7 D 96 -76.39 -19.11 REMARK 500 HR7 D 96 -76.48 -19.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 B3Q D 93 LEU D 94 146.38 REMARK 500 ARG D 95 HR7 D 96 147.96 REMARK 500 B3D D 100 LEU D 101 146.70 REMARK 500 B3A D 103 GLN D 104 145.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 B3Q D 93 -19.59 REMARK 500 B3D D 100 -18.94 REMARK 500 B3A D 103 -18.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1326 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 180 OE2 REMARK 620 2 GLU D 106 OE1 94.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1325 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 224 NE2 REMARK 620 2 HOH A2021 O 114.6 REMARK 620 3 HOH A2083 O 100.9 122.4 REMARK 620 4 HOH A2176 O 106.8 102.5 109.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1325 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 224 NE2 REMARK 620 2 HOH A2132 O 99.5 REMARK 620 3 HOH A2141 O 86.7 62.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1324 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 252 NE2 REMARK 620 2 ASP A 304 OD2 119.5 REMARK 620 3 HOH A2074 O 102.6 108.7 REMARK 620 4 HOH A2167 O 117.7 111.6 91.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1324 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 252 NE2 REMARK 620 2 ASP A 304 OD1 127.8 REMARK 620 3 ASP A 304 OD2 90.0 53.5 REMARK 620 4 HOH A2167 O 105.8 106.3 85.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1327 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 277 NE2 REMARK 620 2 HOH A2215 O 103.4 REMARK 620 3 B3D D 100 OE1 120.7 112.4 REMARK 620 4 B3D D 100 OE2 91.8 73.3 58.0 REMARK 620 5 B3D D 100 OE2 53.7 67.4 173.0 116.2 REMARK 620 6 B3D D 100 OE1 53.5 65.4 170.8 113.4 2.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1323 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 286 SG REMARK 620 2 ASP A 313 OD2 114.1 REMARK 620 3 GLU A 317 OE2 115.0 107.3 REMARK 620 4 HOH A2002 O 121.9 91.8 103.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1331 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BPI RELATED DB: PDB REMARK 900 MCL-1 BOUND TO ALPHA BETA PUMA BH3 PEPTIDE 2 REMARK 900 RELATED ID: 4BPK RELATED DB: PDB REMARK 900 BCL-XL BOUND TO ALPHA BETA PUMA BH3 PEPTIDE 5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHIMERA WITH MOUSE MCL-1 DBREF 4BPJ A 171 208 UNP P97287 MCL1_MOUSE 152 308 DBREF 4BPJ A 209 327 UNP Q07820 MCL1_HUMAN 209 327 DBREF 4BPJ D 89 107 PDB 4BPJ 4BPJ 89 107 SEQADV 4BPJ GLY A 166 UNP P97287 EXPRESSION TAG SEQADV 4BPJ PRO A 167 UNP P97287 EXPRESSION TAG SEQADV 4BPJ LEU A 168 UNP P97287 EXPRESSION TAG SEQADV 4BPJ GLY A 169 UNP P97287 EXPRESSION TAG SEQADV 4BPJ SER A 170 UNP P97287 EXPRESSION TAG SEQRES 1 A 162 GLY PRO LEU GLY SER GLU ASP ASP LEU TYR ARG GLN SER SEQRES 2 A 162 LEU GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR SEQRES 3 A 162 GLY SER LYS ASP SER LYS PRO LEU GLY GLU ALA GLY ALA SEQRES 4 A 162 ALA GLY ARG ARG ALA LEU GLU THR LEU ARG ARG VAL GLY SEQRES 5 A 162 ASP GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY SEQRES 6 A 162 MET LEU ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL SEQRES 7 A 162 LYS SER LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP SEQRES 8 A 162 GLY VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER SEQRES 9 A 162 PHE GLY ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN SEQRES 10 A 162 GLN GLU SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR SEQRES 11 A 162 ASP VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS SEQRES 12 A 162 GLN ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL SEQRES 13 A 162 GLU ASP LEU GLU GLY GLY SEQRES 1 D 19 ALA ILE DAL ALA B3Q LEU ARG HR7 MET ALA ASP B3D LEU SEQRES 2 D 19 ASN B3A GLN TYR GLU NH2 MODRES 4BPJ HR7 D 96 ARG MODRES 4BPJ B3D D 100 ASP 3-AMINOPENTANEDIOIC ACID MODRES 4BPJ B3A D 103 ALA (3S)-3-AMINOBUTANOIC ACID HET DAL D 91 5 HET B3Q D 93 10 HET HR7 D 96 12 HET B3D D 100 9 HET B3A D 103 6 HET NH2 D 107 1 HET ZN A1323 1 HET ZN A1324 2 HET ZN A1325 2 HET ZN A1326 1 HET ZN A1327 1 HET CL A1328 1 HET CL A1329 1 HET CL A1330 1 HET CL A1331 1 HETNAM DAL D-ALANINE HETNAM B3Q (3S)-3,6-DIAMINO-6-OXOHEXANOIC ACID HETNAM HR7 (3S)-3-AMINO-6-[(DIAMINOMETHYLIDENE)AMINO]HEXANOIC ACID HETNAM B3D 3-AMINOPENTANEDIOIC ACID HETNAM B3A (3S)-3-AMINOBUTANOIC ACID HETNAM NH2 AMINO GROUP HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETSYN B3Q (S)-BETA-3-HOMOGLUTAMINE HETSYN HR7 BETA-HOMOARGININE HETSYN B3D BETA-HOMOASPARTATE FORMUL 2 DAL C3 H7 N O2 FORMUL 2 B3Q C6 H12 N2 O3 FORMUL 2 HR7 C7 H16 N4 O2 FORMUL 2 B3D C5 H9 N O4 FORMUL 2 B3A C4 H9 N O2 FORMUL 2 NH2 H2 N FORMUL 3 ZN 5(ZN 2+) FORMUL 8 CL 4(CL 1-) FORMUL 12 HOH *121(H2 O) HELIX 1 1 ASP A 172 GLY A 192 1 21 HELIX 2 2 GLY A 203 HIS A 224 1 22 HELIX 3 3 HIS A 224 ASN A 239 1 16 HELIX 4 4 LYS A 244 SER A 255 1 12 HELIX 5 5 ASN A 260 ASN A 282 1 23 HELIX 6 6 ILE A 287 GLN A 309 1 23 HELIX 7 7 ARG A 310 HIS A 320 1 11 HELIX 8 8 ALA D 89 ARG D 95 1 7 HELIX 9 9 MET D 97 ASN D 102 1 6 LINK C ILE D 90 N DAL D 91 1555 1555 1.33 LINK C DAL D 91 N ALA D 92 1555 1555 1.33 LINK C ALA D 92 N B3Q D 93 1555 1555 1.33 LINK C B3Q D 93 N LEU D 94 1555 1555 1.34 LINK C ARG D 95 N HR7 D 96 1555 1555 1.34 LINK C HR7 D 96 N BMET D 97 1555 1555 1.33 LINK C HR7 D 96 N AMET D 97 1555 1555 1.33 LINK C ASP D 99 N B3D D 100 1555 1555 1.33 LINK C B3D D 100 N LEU D 101 1555 1555 1.33 LINK C ASN D 102 N B3A D 103 1555 1555 1.33 LINK C B3A D 103 N GLN D 104 1555 1555 1.33 LINK C GLU D 106 N NH2 D 107 1555 1555 1.33 LINK OE2 GLU A 180 ZN ZN A1326 1555 1555 2.00 LINK NE2AHIS A 224 ZN A ZN A1325 1555 1555 2.11 LINK NE2BHIS A 224 ZN B ZN A1325 1555 1555 2.07 LINK NE2 HIS A 252 ZN A ZN A1324 1555 1555 1.93 LINK NE2 HIS A 252 ZN B ZN A1324 1555 1555 2.06 LINK NE2 HIS A 277 ZN ZN A1327 1555 1555 2.01 LINK SG CYS A 286 ZN ZN A1323 1555 1555 2.14 LINK OD2 ASP A 304 ZN A ZN A1324 2555 1555 1.92 LINK OD1 ASP A 304 ZN B ZN A1324 2555 1555 2.13 LINK OD2 ASP A 304 ZN B ZN A1324 2555 1555 2.61 LINK OD2 ASP A 313 ZN ZN A1323 4545 1555 1.97 LINK OE2 GLU A 317 ZN ZN A1323 4545 1555 2.00 LINK ZN ZN A1323 O HOH A2002 1555 1555 2.38 LINK ZN A ZN A1324 O HOH A2074 1555 1555 2.30 LINK ZN A ZN A1324 O HOH A2167 1555 1555 2.00 LINK ZN B ZN A1324 O HOH A2167 1555 1555 2.16 LINK ZN A ZN A1325 O HOH A2021 1555 1555 2.18 LINK ZN A ZN A1325 O AHOH A2083 1555 1555 2.20 LINK ZN B ZN A1325 O HOH A2132 1555 1555 2.36 LINK ZN B ZN A1325 O HOH A2141 1555 1555 2.66 LINK ZN A ZN A1325 O HOH A2176 1555 1555 1.87 LINK ZN ZN A1326 OE1 GLU D 106 1555 4545 2.04 LINK ZN ZN A1327 O HOH A2215 1555 1555 2.50 LINK ZN ZN A1327 OE1 B3D D 100 1555 4546 2.02 LINK ZN ZN A1327 OE2 B3D D 100 1555 4546 2.43 LINK ZN ZN A1327 OE2 B3D D 100 4556 1555 2.43 LINK ZN ZN A1327 OE1 B3D D 100 4556 1555 2.02 SITE 1 AC1 4 CYS A 286 ASP A 313 GLU A 317 HOH A2002 SITE 1 AC2 4 HIS A 252 ASP A 304 HOH A2074 HOH A2167 SITE 1 AC3 4 HIS A 224 HOH A2021 HOH A2083 HOH A2176 SITE 1 AC4 4 GLU A 180 HOH A2165 HOH A2210 GLU D 106 SITE 1 AC5 5 ASP A 236 GLU A 240 HIS A 277 HOH A2215 SITE 2 AC5 5 B3D D 100 SITE 1 AC6 3 ARG A 187 CYS A 286 ILE A 287 SITE 1 AC7 1 ILE A 237 CRYST1 78.458 60.260 44.804 90.00 118.47 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012746 0.000000 0.006912 0.00000 SCALE2 0.000000 0.016595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025390 0.00000