data_4BPM # _entry.id 4BPM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.305 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4BPM PDBE EBI-56616 WWPDB D_1290056616 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4BPD _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF AN INTEGRAL MEMBRANE ENZYME DGKA- V1' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4BPM _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2013-05-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, D.' 1 'Wang, M.' 2 'Olieric, V.' 3 'Caffrey, M.' 4 # _citation.id primary _citation.title ;Crystallizing Membrane Proteins in the Lipidic Mesophase. Experience with Human Prostaglandin E2 Synthase 1 and an Evolving Strategy. ; _citation.journal_abbrev 'Cryst.Growth Des.' _citation.journal_volume 14 _citation.page_first 2034 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1528-7483 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24803849 _citation.pdbx_database_id_DOI 10.1021/CG500157X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, D.' 1 ? primary 'Howe, N.' 2 ? primary 'Dukkipati, A.' 3 ? primary 'Shah, S.T.A.' 4 ? primary 'Bax, B.D.' 5 ? primary 'Edge, C.' 6 ? primary 'Bridges, A.' 7 ? primary 'Hardwicke, P.' 8 ? primary 'Singh, O.M.P.' 9 ? primary 'Giblin, G.' 10 ? primary 'Pautsch, A.' 11 ? primary 'Pfau, R.' 12 ? primary 'Schnapp, G.' 13 ? primary 'Wang, M.' 14 ? primary 'Olieric, V.' 15 ? primary 'Caffrey, M.' 16 ? # _cell.entry_id 4BPM _cell.length_a 86.400 _cell.length_b 86.400 _cell.length_c 181.120 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BPM _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROSTAGLANDIN E SYNTHASE, FUSION PEPTIDE' 20360.932 1 5.3.99.3 YES 'GSH-BINDING MOTIF, RESIDUES 10-152' ? 2 non-polymer syn GLUTATHIONE 307.323 1 ? ? ? ? 3 non-polymer syn ;2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide ; 618.475 1 ? ? ? ? 4 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;MICROSOMAL GLUTATHIONE S-TRANSFERASE 1-LIKE 1, MGST1-L1, MICROSOMAL PROSTAGLANDIN E SYNTHASE 1, MPGES-1, P53-INDUCED GENE 12 PROTEIN, PROSTAGLANDIN E2 SYNTHASE 1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCRSDPDVERCLRAHRNDMETIYPF LFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAYLGKLRAPIRSVTYTLAQLPCASMALQILWEAARHFLPAALRAALL GRLRTLRPWADYKDDDDK ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSPALPAFLLCSTLLVIKMYVVAIITGQVRLRKKAFANPEDALRHGGPQYCRSDPDVERCLRAHRNDMETIYPF LFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAYLGKLRAPIRSVTYTLAQLPCASMALQILWEAARHFLPAALRAALL GRLRTLRPWADYKDDDDK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 PRO n 1 10 ALA n 1 11 LEU n 1 12 PRO n 1 13 ALA n 1 14 PHE n 1 15 LEU n 1 16 LEU n 1 17 CYS n 1 18 SER n 1 19 THR n 1 20 LEU n 1 21 LEU n 1 22 VAL n 1 23 ILE n 1 24 LYS n 1 25 MET n 1 26 TYR n 1 27 VAL n 1 28 VAL n 1 29 ALA n 1 30 ILE n 1 31 ILE n 1 32 THR n 1 33 GLY n 1 34 GLN n 1 35 VAL n 1 36 ARG n 1 37 LEU n 1 38 ARG n 1 39 LYS n 1 40 LYS n 1 41 ALA n 1 42 PHE n 1 43 ALA n 1 44 ASN n 1 45 PRO n 1 46 GLU n 1 47 ASP n 1 48 ALA n 1 49 LEU n 1 50 ARG n 1 51 HIS n 1 52 GLY n 1 53 GLY n 1 54 PRO n 1 55 GLN n 1 56 TYR n 1 57 CYS n 1 58 ARG n 1 59 SER n 1 60 ASP n 1 61 PRO n 1 62 ASP n 1 63 VAL n 1 64 GLU n 1 65 ARG n 1 66 CYS n 1 67 LEU n 1 68 ARG n 1 69 ALA n 1 70 HIS n 1 71 ARG n 1 72 ASN n 1 73 ASP n 1 74 MET n 1 75 GLU n 1 76 THR n 1 77 ILE n 1 78 TYR n 1 79 PRO n 1 80 PHE n 1 81 LEU n 1 82 PHE n 1 83 LEU n 1 84 GLY n 1 85 PHE n 1 86 VAL n 1 87 TYR n 1 88 SER n 1 89 PHE n 1 90 LEU n 1 91 GLY n 1 92 PRO n 1 93 ASN n 1 94 PRO n 1 95 PHE n 1 96 VAL n 1 97 ALA n 1 98 TRP n 1 99 MET n 1 100 HIS n 1 101 PHE n 1 102 LEU n 1 103 VAL n 1 104 PHE n 1 105 LEU n 1 106 VAL n 1 107 GLY n 1 108 ARG n 1 109 VAL n 1 110 ALA n 1 111 HIS n 1 112 THR n 1 113 VAL n 1 114 ALA n 1 115 TYR n 1 116 LEU n 1 117 GLY n 1 118 LYS n 1 119 LEU n 1 120 ARG n 1 121 ALA n 1 122 PRO n 1 123 ILE n 1 124 ARG n 1 125 SER n 1 126 VAL n 1 127 THR n 1 128 TYR n 1 129 THR n 1 130 LEU n 1 131 ALA n 1 132 GLN n 1 133 LEU n 1 134 PRO n 1 135 CYS n 1 136 ALA n 1 137 SER n 1 138 MET n 1 139 ALA n 1 140 LEU n 1 141 GLN n 1 142 ILE n 1 143 LEU n 1 144 TRP n 1 145 GLU n 1 146 ALA n 1 147 ALA n 1 148 ARG n 1 149 HIS n 1 150 PHE n 1 151 LEU n 1 152 PRO n 1 153 ALA n 1 154 ALA n 1 155 LEU n 1 156 ARG n 1 157 ALA n 1 158 ALA n 1 159 LEU n 1 160 LEU n 1 161 GLY n 1 162 ARG n 1 163 LEU n 1 164 ARG n 1 165 THR n 1 166 LEU n 1 167 ARG n 1 168 PRO n 1 169 TRP n 1 170 ALA n 1 171 ASP n 1 172 TYR n 1 173 LYS n 1 174 ASP n 1 175 ASP n 1 176 ASP n 1 177 ASP n 1 178 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 8 150 ? ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? 'FALL ARMYWORM' 'SPODOPTERA FRUGIPERDA' 7108 ? ? ? ? ? ? ? ? SF9 ? ? ? ? ? ? PFASTBAC1 ? ? 'PFB1-6H-MPGES (10-152)-F-LTC4S' ? ? 1 2 sample ? 151 178 ? ? ? ? ? ? ? ? ? 'SYNTHETIC CONSTRUCT' 32630 ? ? ? ? ? ? ? 'FALL ARMYWORM' 'SPODOPTERA FRUGIPERDA' 7108 ? ? ? ? ? ? ? ? SF9 ? ? ? ? ? ? PFASTBAC1 ? ? 'PFB1-6H-MPGES (10-152)-F-LTC4S' ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP PTGES_HUMAN 1 ? ? O14684 ? 2 PDB 4BPM 1 ? ? 4BPM ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4BPM A 8 ? 150 ? O14684 10 ? 152 ? 10 152 2 2 4BPM A 151 ? 178 ? 4BPM 153 ? 180 ? 153 180 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4BPM MET A 1 ? UNP O14684 ? ? 'expression tag' 3 1 1 4BPM HIS A 2 ? UNP O14684 ? ? 'expression tag' 4 2 1 4BPM HIS A 3 ? UNP O14684 ? ? 'expression tag' 5 3 1 4BPM HIS A 4 ? UNP O14684 ? ? 'expression tag' 6 4 1 4BPM HIS A 5 ? UNP O14684 ? ? 'expression tag' 7 5 1 4BPM HIS A 6 ? UNP O14684 ? ? 'expression tag' 8 6 1 4BPM HIS A 7 ? UNP O14684 ? ? 'expression tag' 9 7 1 4BPM PHE A 150 ? UNP O14684 LEU 152 'engineered mutation' 152 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GSH non-polymer . GLUTATHIONE ? 'C10 H17 N3 O6 S' 307.323 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LVJ non-polymer . ;2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide ; ? 'C27 H32 Cl2 F3 N5 O4' 618.475 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4BPM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.21 _exptl_crystal.density_percent_sol 61.65 _exptl_crystal.description NONE _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;8 %(V/V) 2-METHYL-2,4, -PENTANEDIOL (MPD), 0.4 M POTASSIUM NITRATE, 0.1 M POTASSIUM CITRATE, 0.1 M N-(CARBAMOYLMETHYL)IMINODIACETIC ACID (ADA) SODIUM PH 6.7. CRYSTALLIZED USING THE IN MESO (LIPIDIC CUBIC PHASE, LCP) METHOD AT 4 DEGREES CELCIUS WITH THE 8.8 MONOACYLGLYCEROL (8.8 MAG) DOPED WITH 2 MOL% OF DIOLEOYL PHOSPHATIDYLCHOLINE (DOPC) AS THE HOSTING LIPID. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-11-02 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.003319 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 1.003319 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4BPM _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 36.64 _reflns.d_resolution_high 2.08 _reflns.number_obs 15904 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.90 _reflns.B_iso_Wilson_estimate 38.60 _reflns.pdbx_redundancy 5.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.08 _reflns_shell.d_res_low 2.13 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.82 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.50 _reflns_shell.pdbx_redundancy 5.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4BPM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 15904 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 36.639 _refine.ls_d_res_high 2.080 _refine.ls_percent_reflns_obs 99.58 _refine.ls_R_factor_obs 0.2009 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1999 _refine.ls_R_factor_R_free 0.2182 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 794 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 50.27 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.11 _refine.pdbx_overall_phase_error 22.21 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1292 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 61 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 1390 _refine_hist.d_res_high 2.080 _refine_hist.d_res_low 36.639 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 1427 'X-RAY DIFFRACTION' ? f_angle_d 0.763 ? ? 1956 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 11.190 ? ? 542 'X-RAY DIFFRACTION' ? f_chiral_restr 0.043 ? ? 217 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 268 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.0800 2.2103 2476 0.2491 100.00 0.2737 . . 134 . . 'X-RAY DIFFRACTION' . 2.2103 2.3809 2483 0.2244 100.00 0.2540 . . 138 . . 'X-RAY DIFFRACTION' . 2.3809 2.6205 2506 0.2110 100.00 0.2474 . . 130 . . 'X-RAY DIFFRACTION' . 2.6205 2.9995 2499 0.1873 100.00 0.1969 . . 131 . . 'X-RAY DIFFRACTION' . 2.9995 3.7785 2525 0.1855 100.00 0.2116 . . 132 . . 'X-RAY DIFFRACTION' . 3.7785 36.6445 2621 0.1992 99.00 0.2080 . . 129 . . # _struct.entry_id 4BPM _struct.title 'Crystal structure of a human integral membrane enzyme' _struct.pdbx_descriptor 'PROSTAGLANDIN E SYNTHASE, FUSION PEPTIDE (E.C.5.3.99.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4BPM _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text ;ISOMERASE, CANCER, DRUG TARGET, IN MESO CRYSTALLIZATION, INFLAMMATION, INHIBITOR, LEUKOTRIENE C4 SYNTHASE, LIPID METABOLISM, MEMBRANE-ASSOCIATED PROTEINS IN EICOSANOID AND GLUTATHIONE METABOLISM, MAPAG, MEMBRANE PROTEIN, MPGES1, PAIN, MICROCRYSTAL, ANOMALOUS DISPERSION, SULFUR-SAD, S-SAD ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 10 ? LYS A 40 ? ALA A 12 LYS A 42 1 ? 31 HELX_P HELX_P2 2 ASN A 44 ? HIS A 51 ? ASN A 46 HIS A 53 1 ? 8 HELX_P HELX_P3 3 GLY A 53 ? TYR A 56 ? GLY A 55 TYR A 58 5 ? 4 HELX_P HELX_P4 4 ASP A 60 ? PHE A 89 ? ASP A 62 PHE A 91 1 ? 30 HELX_P HELX_P5 5 ASN A 93 ? GLY A 117 ? ASN A 95 GLY A 119 1 ? 25 HELX_P HELX_P6 6 PRO A 122 ? PHE A 150 ? PRO A 124 PHE A 152 1 ? 29 HELX_P HELX_P7 7 PRO A 152 ? LEU A 159 ? PRO A 154 LEU A 161 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 121 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 123 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 122 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 124 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.35 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 17 'BINDING SITE FOR RESIDUE GSH A 1172' AC2 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE LVJ A 1173' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 ALA A 29 ? ALA A 31 . ? 2_555 ? 2 AC1 17 THR A 32 ? THR A 34 . ? 2_555 ? 3 AC1 17 ARG A 36 ? ARG A 38 . ? 2_555 ? 4 AC1 17 LEU A 67 ? LEU A 69 . ? 2_555 ? 5 AC1 17 ARG A 68 ? ARG A 70 . ? 1_555 ? 6 AC1 17 ARG A 71 ? ARG A 73 . ? 1_555 ? 7 AC1 17 ASN A 72 ? ASN A 74 . ? 1_555 ? 8 AC1 17 GLU A 75 ? GLU A 77 . ? 1_555 ? 9 AC1 17 HIS A 111 ? HIS A 113 . ? 1_555 ? 10 AC1 17 TYR A 115 ? TYR A 117 . ? 1_555 ? 11 AC1 17 ARG A 124 ? ARG A 126 . ? 1_555 ? 12 AC1 17 SER A 125 ? SER A 127 . ? 1_555 ? 13 AC1 17 TYR A 128 ? TYR A 130 . ? 1_555 ? 14 AC1 17 LVJ C . ? LVJ A 1173 . ? 1_555 ? 15 AC1 17 HOH D . ? HOH A 2004 . ? 2_555 ? 16 AC1 17 HOH D . ? HOH A 2024 . ? 1_555 ? 17 AC1 17 HOH D . ? HOH A 2037 . ? 1_555 ? 18 AC2 13 GLY A 33 ? GLY A 35 . ? 2_555 ? 19 AC2 13 GLN A 34 ? GLN A 36 . ? 2_555 ? 20 AC2 13 LEU A 37 ? LEU A 39 . ? 2_555 ? 21 AC2 13 ASP A 47 ? ASP A 49 . ? 2_555 ? 22 AC2 13 ARG A 50 ? ARG A 52 . ? 2_555 ? 23 AC2 13 HIS A 51 ? HIS A 53 . ? 2_555 ? 24 AC2 13 ALA A 121 ? ALA A 123 . ? 1_555 ? 25 AC2 13 PRO A 122 ? PRO A 124 . ? 1_555 ? 26 AC2 13 SER A 125 ? SER A 127 . ? 1_555 ? 27 AC2 13 VAL A 126 ? VAL A 128 . ? 1_555 ? 28 AC2 13 THR A 129 ? THR A 131 . ? 1_555 ? 29 AC2 13 LEU A 130 ? LEU A 132 . ? 1_555 ? 30 AC2 13 GSH B . ? GSH A 1172 . ? 1_555 ? # _database_PDB_matrix.entry_id 4BPM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4BPM _atom_sites.fract_transf_matrix[1][1] 0.011574 _atom_sites.fract_transf_matrix[1][2] 0.006682 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013365 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005521 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL F N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 3 ? ? ? A . n A 1 2 HIS 2 4 ? ? ? A . n A 1 3 HIS 3 5 ? ? ? A . n A 1 4 HIS 4 6 ? ? ? A . n A 1 5 HIS 5 7 ? ? ? A . n A 1 6 HIS 6 8 ? ? ? A . n A 1 7 HIS 7 9 ? ? ? A . n A 1 8 SER 8 10 10 SER SER A . n A 1 9 PRO 9 11 11 PRO PRO A . n A 1 10 ALA 10 12 12 ALA ALA A . n A 1 11 LEU 11 13 13 LEU LEU A . n A 1 12 PRO 12 14 14 PRO PRO A . n A 1 13 ALA 13 15 15 ALA ALA A . n A 1 14 PHE 14 16 16 PHE PHE A . n A 1 15 LEU 15 17 17 LEU LEU A . n A 1 16 LEU 16 18 18 LEU LEU A . n A 1 17 CYS 17 19 19 CYS CYS A . n A 1 18 SER 18 20 20 SER SER A . n A 1 19 THR 19 21 21 THR THR A . n A 1 20 LEU 20 22 22 LEU LEU A . n A 1 21 LEU 21 23 23 LEU LEU A . n A 1 22 VAL 22 24 24 VAL VAL A . n A 1 23 ILE 23 25 25 ILE ILE A . n A 1 24 LYS 24 26 26 LYS LYS A . n A 1 25 MET 25 27 27 MET MET A . n A 1 26 TYR 26 28 28 TYR TYR A . n A 1 27 VAL 27 29 29 VAL VAL A . n A 1 28 VAL 28 30 30 VAL VAL A . n A 1 29 ALA 29 31 31 ALA ALA A . n A 1 30 ILE 30 32 32 ILE ILE A . n A 1 31 ILE 31 33 33 ILE ILE A . n A 1 32 THR 32 34 34 THR THR A . n A 1 33 GLY 33 35 35 GLY GLY A . n A 1 34 GLN 34 36 36 GLN GLN A . n A 1 35 VAL 35 37 37 VAL VAL A . n A 1 36 ARG 36 38 38 ARG ARG A . n A 1 37 LEU 37 39 39 LEU LEU A . n A 1 38 ARG 38 40 40 ARG ARG A . n A 1 39 LYS 39 41 41 LYS LYS A . n A 1 40 LYS 40 42 42 LYS LYS A . n A 1 41 ALA 41 43 43 ALA ALA A . n A 1 42 PHE 42 44 44 PHE PHE A . n A 1 43 ALA 43 45 45 ALA ALA A . n A 1 44 ASN 44 46 46 ASN ASN A . n A 1 45 PRO 45 47 47 PRO PRO A . n A 1 46 GLU 46 48 48 GLU GLU A . n A 1 47 ASP 47 49 49 ASP ASP A . n A 1 48 ALA 48 50 50 ALA ALA A . n A 1 49 LEU 49 51 51 LEU LEU A . n A 1 50 ARG 50 52 52 ARG ARG A . n A 1 51 HIS 51 53 53 HIS HIS A . n A 1 52 GLY 52 54 54 GLY GLY A . n A 1 53 GLY 53 55 55 GLY GLY A . n A 1 54 PRO 54 56 56 PRO PRO A . n A 1 55 GLN 55 57 57 GLN GLN A . n A 1 56 TYR 56 58 58 TYR TYR A . n A 1 57 CYS 57 59 59 CYS CYS A . n A 1 58 ARG 58 60 60 ARG ARG A . n A 1 59 SER 59 61 61 SER SER A . n A 1 60 ASP 60 62 62 ASP ASP A . n A 1 61 PRO 61 63 63 PRO PRO A . n A 1 62 ASP 62 64 64 ASP ASP A . n A 1 63 VAL 63 65 65 VAL VAL A . n A 1 64 GLU 64 66 66 GLU GLU A . n A 1 65 ARG 65 67 67 ARG ARG A . n A 1 66 CYS 66 68 68 CYS CYS A . n A 1 67 LEU 67 69 69 LEU LEU A . n A 1 68 ARG 68 70 70 ARG ARG A . n A 1 69 ALA 69 71 71 ALA ALA A . n A 1 70 HIS 70 72 72 HIS HIS A . n A 1 71 ARG 71 73 73 ARG ARG A . n A 1 72 ASN 72 74 74 ASN ASN A . n A 1 73 ASP 73 75 75 ASP ASP A . n A 1 74 MET 74 76 76 MET MET A . n A 1 75 GLU 75 77 77 GLU GLU A . n A 1 76 THR 76 78 78 THR THR A . n A 1 77 ILE 77 79 79 ILE ILE A . n A 1 78 TYR 78 80 80 TYR TYR A . n A 1 79 PRO 79 81 81 PRO PRO A . n A 1 80 PHE 80 82 82 PHE PHE A . n A 1 81 LEU 81 83 83 LEU LEU A . n A 1 82 PHE 82 84 84 PHE PHE A . n A 1 83 LEU 83 85 85 LEU LEU A . n A 1 84 GLY 84 86 86 GLY GLY A . n A 1 85 PHE 85 87 87 PHE PHE A . n A 1 86 VAL 86 88 88 VAL VAL A . n A 1 87 TYR 87 89 89 TYR TYR A . n A 1 88 SER 88 90 90 SER SER A . n A 1 89 PHE 89 91 91 PHE PHE A . n A 1 90 LEU 90 92 92 LEU LEU A . n A 1 91 GLY 91 93 93 GLY GLY A . n A 1 92 PRO 92 94 94 PRO PRO A . n A 1 93 ASN 93 95 95 ASN ASN A . n A 1 94 PRO 94 96 96 PRO PRO A . n A 1 95 PHE 95 97 97 PHE PHE A . n A 1 96 VAL 96 98 98 VAL VAL A . n A 1 97 ALA 97 99 99 ALA ALA A . n A 1 98 TRP 98 100 100 TRP TRP A . n A 1 99 MET 99 101 101 MET MET A . n A 1 100 HIS 100 102 102 HIS HIS A . n A 1 101 PHE 101 103 103 PHE PHE A . n A 1 102 LEU 102 104 104 LEU LEU A . n A 1 103 VAL 103 105 105 VAL VAL A . n A 1 104 PHE 104 106 106 PHE PHE A . n A 1 105 LEU 105 107 107 LEU LEU A . n A 1 106 VAL 106 108 108 VAL VAL A . n A 1 107 GLY 107 109 109 GLY GLY A . n A 1 108 ARG 108 110 110 ARG ARG A . n A 1 109 VAL 109 111 111 VAL VAL A . n A 1 110 ALA 110 112 112 ALA ALA A . n A 1 111 HIS 111 113 113 HIS HIS A . n A 1 112 THR 112 114 114 THR THR A . n A 1 113 VAL 113 115 115 VAL VAL A . n A 1 114 ALA 114 116 116 ALA ALA A . n A 1 115 TYR 115 117 117 TYR TYR A . n A 1 116 LEU 116 118 118 LEU LEU A . n A 1 117 GLY 117 119 119 GLY GLY A . n A 1 118 LYS 118 120 120 LYS LYS A . n A 1 119 LEU 119 121 121 LEU LEU A . n A 1 120 ARG 120 122 122 ARG ARG A . n A 1 121 ALA 121 123 123 ALA ALA A . n A 1 122 PRO 122 124 124 PRO PRO A . n A 1 123 ILE 123 125 125 ILE ILE A . n A 1 124 ARG 124 126 126 ARG ARG A . n A 1 125 SER 125 127 127 SER SER A . n A 1 126 VAL 126 128 128 VAL VAL A . n A 1 127 THR 127 129 129 THR THR A . n A 1 128 TYR 128 130 130 TYR TYR A . n A 1 129 THR 129 131 131 THR THR A . n A 1 130 LEU 130 132 132 LEU LEU A . n A 1 131 ALA 131 133 133 ALA ALA A . n A 1 132 GLN 132 134 134 GLN GLN A . n A 1 133 LEU 133 135 135 LEU LEU A . n A 1 134 PRO 134 136 136 PRO PRO A . n A 1 135 CYS 135 137 137 CYS CYS A . n A 1 136 ALA 136 138 138 ALA ALA A . n A 1 137 SER 137 139 139 SER SER A . n A 1 138 MET 138 140 140 MET MET A . n A 1 139 ALA 139 141 141 ALA ALA A . n A 1 140 LEU 140 142 142 LEU LEU A . n A 1 141 GLN 141 143 143 GLN GLN A . n A 1 142 ILE 142 144 144 ILE ILE A . n A 1 143 LEU 143 145 145 LEU LEU A . n A 1 144 TRP 144 146 146 TRP TRP A . n A 1 145 GLU 145 147 147 GLU GLU A . n A 1 146 ALA 146 148 148 ALA ALA A . n A 1 147 ALA 147 149 149 ALA ALA A . n A 1 148 ARG 148 150 150 ARG ARG A . n A 1 149 HIS 149 151 151 HIS HIS A . n A 1 150 PHE 150 152 152 PHE PHE A . n A 1 151 LEU 151 153 153 LEU LEU A . n A 1 152 PRO 152 154 154 PRO PRO A . n A 1 153 ALA 153 155 155 ALA ALA A . n A 1 154 ALA 154 156 156 ALA ALA A . n A 1 155 LEU 155 157 157 LEU LEU A . n A 1 156 ARG 156 158 158 ARG ARG A . n A 1 157 ALA 157 159 159 ALA ALA A . n A 1 158 ALA 158 160 160 ALA ALA A . n A 1 159 LEU 159 161 161 LEU LEU A . n A 1 160 LEU 160 162 162 LEU LEU A . n A 1 161 GLY 161 163 163 GLY GLY A . n A 1 162 ARG 162 164 164 ARG ARG A . n A 1 163 LEU 163 165 165 LEU LEU A . n A 1 164 ARG 164 166 166 ARG ARG A . n A 1 165 THR 165 167 167 THR THR A . n A 1 166 LEU 166 168 168 LEU LEU A . n A 1 167 ARG 167 169 169 ARG ARG A . n A 1 168 PRO 168 170 170 PRO PRO A . n A 1 169 TRP 169 171 171 TRP TRP A . n A 1 170 ALA 170 172 ? ? ? A . n A 1 171 ASP 171 173 ? ? ? A . n A 1 172 TYR 172 174 ? ? ? A . n A 1 173 LYS 173 175 ? ? ? A . n A 1 174 ASP 174 176 ? ? ? A . n A 1 175 ASP 175 177 ? ? ? A . n A 1 176 ASP 176 178 ? ? ? A . n A 1 177 ASP 177 179 ? ? ? A . n A 1 178 LYS 178 180 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH 1 1172 1172 GSH GSH A . C 3 LVJ 1 1173 1173 LVJ LVJ A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11820 ? 1 MORE -53.7 ? 1 'SSA (A^2)' 23540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-16 2 'Structure model' 1 1 2014-05-14 3 'Structure model' 1 2 2017-03-15 4 'Structure model' 1 3 2019-03-06 5 'Structure model' 1 4 2019-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Source and taxonomy' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 5 'Structure model' exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 5 'Structure model' '_exptl_crystal_grow.temp' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language PHENIX refinement '(PHENIX.REFINE)' ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XSCALE 'data scaling' . ? 3 ? ? ? ? SHELX phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 4BPM _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE N-TERMINAL 9 AMINO ACIDS MPAHSLVMS WERE OMITTED. A 6- HIS TAG WAS PLACED AT THE N-TERMINUS. A POINT MUTATION L152F WAS INTRODUCED. A FUSION PEPTIDE LPAALRAALLGRLRTLRPWADYKDDDDK WAS ADDED IN THE C-TERMINUS. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 3 ? A MET 1 2 1 Y 1 A HIS 4 ? A HIS 2 3 1 Y 1 A HIS 5 ? A HIS 3 4 1 Y 1 A HIS 6 ? A HIS 4 5 1 Y 1 A HIS 7 ? A HIS 5 6 1 Y 1 A HIS 8 ? A HIS 6 7 1 Y 1 A HIS 9 ? A HIS 7 8 1 Y 1 A ALA 172 ? A ALA 170 9 1 Y 1 A ASP 173 ? A ASP 171 10 1 Y 1 A TYR 174 ? A TYR 172 11 1 Y 1 A LYS 175 ? A LYS 173 12 1 Y 1 A ASP 176 ? A ASP 174 13 1 Y 1 A ASP 177 ? A ASP 175 14 1 Y 1 A ASP 178 ? A ASP 176 15 1 Y 1 A ASP 179 ? A ASP 177 16 1 Y 1 A LYS 180 ? A LYS 178 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLUTATHIONE GSH 3 ;2-[[2,6-bis(chloranyl)-3-[(2,2-dimethylpropanoylamino)methyl]phenyl]amino]-1-methyl-6-(2-methyl-2-oxidanyl-propoxy)-N-[2,2,2-tris(fluoranyl)ethyl]benzimidazole-5-carboxamide ; LVJ 4 water HOH #