HEADER CELL ADHESION 30-MAY-13 4BQC TITLE CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1 BOUND TO SOS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEOGENIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FN-TYPE III DOMAINS 5 AND 6, RESIDUES 883-1133; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: N-LINKED GLYCOSYLATION AT N940 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR C.H.BELL,E.HEALEY,S.VANERP,B.BISHOP,C.TANG,R.J.C.GILBERT, AUTHOR 2 A.R.ARICESCU,R.J.PASTERKAMP,C.SIEBOLD REVDAT 5 29-JUL-20 4BQC 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 03-APR-19 4BQC 1 SOURCE LINK REVDAT 3 17-JUL-13 4BQC 1 JRNL REVDAT 2 19-JUN-13 4BQC 1 JRNL REVDAT 1 12-JUN-13 4BQC 0 JRNL AUTH C.H.BELL,E.HEALEY,S.VAN ERP,B.BISHOP,C.TANG,R.J.C.GILBERT, JRNL AUTH 2 A.R.ARICESCU,R.J.PASTERKAMP,C.SIEBOLD JRNL TITL STRUCTURE OF THE REPULSIVE GUIDANCE MOLECULE (RGM)-NEOGENIN JRNL TITL 2 SIGNALING HUB JRNL REF SCIENCE V. 341 77 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 23744777 JRNL DOI 10.1126/SCIENCE.1232322 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 11548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 554 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2686 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2434 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2545 REMARK 3 BIN R VALUE (WORKING SET) : 0.2417 REMARK 3 BIN FREE R VALUE : 0.2744 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.25 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2953 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 102.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.00130 REMARK 3 B22 (A**2) : 31.75150 REMARK 3 B33 (A**2) : -13.75030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.775 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.419 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3160 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4353 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1044 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 61 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 432 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3160 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 448 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3479 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.11 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|881 - A|982 } REMARK 3 ORIGIN FOR THE GROUP (A): 45.5237 -7.9958 9.0397 REMARK 3 T TENSOR REMARK 3 T11: -0.0044 T22: -0.0991 REMARK 3 T33: -0.0330 T12: -0.1399 REMARK 3 T13: 0.0132 T23: 0.0622 REMARK 3 L TENSOR REMARK 3 L11: 4.2963 L22: 3.4924 REMARK 3 L33: 3.8993 L12: 3.2756 REMARK 3 L13: -0.2695 L23: -0.5029 REMARK 3 S TENSOR REMARK 3 S11: 0.1418 S12: -0.2883 S13: -0.8414 REMARK 3 S21: 0.0162 S22: -0.1223 S23: -0.2285 REMARK 3 S31: 0.6609 S32: -0.4349 S33: -0.0194 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|983 - A|1083 } REMARK 3 ORIGIN FOR THE GROUP (A): 67.2089 30.3112 13.9546 REMARK 3 T TENSOR REMARK 3 T11: 0.0506 T22: -0.1547 REMARK 3 T33: -0.1004 T12: -0.2341 REMARK 3 T13: 0.0478 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 6.9343 L22: 8.2307 REMARK 3 L33: 4.7226 L12: 5.4310 REMARK 3 L13: 1.1850 L23: 0.5425 REMARK 3 S TENSOR REMARK 3 S11: 0.0776 S12: -0.2154 S13: 0.1686 REMARK 3 S21: -0.4323 S22: -0.3559 S23: -0.5586 REMARK 3 S31: -0.8884 S32: 0.5587 S33: 0.2783 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|887 - B|982 } REMARK 3 ORIGIN FOR THE GROUP (A): 47.4865 43.1648 9.0359 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: -0.3501 REMARK 3 T33: 0.3791 T12: -0.0117 REMARK 3 T13: -0.1168 T23: 0.1476 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 9.7085 REMARK 3 L33: 2.3532 L12: 1.5152 REMARK 3 L13: -2.8452 L23: -0.2746 REMARK 3 S TENSOR REMARK 3 S11: 0.1535 S12: 0.2679 S13: 1.4868 REMARK 3 S21: -0.8119 S22: 0.1461 S23: -0.2312 REMARK 3 S31: -0.8722 S32: 0.1314 S33: -0.2996 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|983 - B|1083 } REMARK 3 ORIGIN FOR THE GROUP (A): 28.3415 8.6211 14.5913 REMARK 3 T TENSOR REMARK 3 T11: -0.1922 T22: -0.0969 REMARK 3 T33: -0.0685 T12: -0.1216 REMARK 3 T13: 0.1415 T23: -0.1703 REMARK 3 L TENSOR REMARK 3 L11: 7.0539 L22: 10.1916 REMARK 3 L33: 6.7233 L12: 3.7486 REMARK 3 L13: -1.8974 L23: -2.5447 REMARK 3 S TENSOR REMARK 3 S11: -0.3533 S12: -0.2487 S13: -0.6595 REMARK 3 S21: -0.3935 S22: -0.1545 S23: 1.3346 REMARK 3 S31: 1.0532 S32: -0.9430 S33: 0.5078 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290057070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11572 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M POTASSIUM NITRATE, 15% PEG3350, REMARK 280 PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.96000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.96000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.08000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.92000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.08000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.92000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.96000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.08000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.92000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.96000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.08000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.92000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 880 REMARK 465 PRO A 911 REMARK 465 LYS A 912 REMARK 465 HIS A 913 REMARK 465 GLN A 914 REMARK 465 LYS A 915 REMARK 465 ILE A 916 REMARK 465 LYS A 1084 REMARK 465 ALA A 1085 REMARK 465 ASP A 1086 REMARK 465 SER A 1087 REMARK 465 SER A 1088 REMARK 465 ASP A 1089 REMARK 465 LYS A 1090 REMARK 465 MET A 1091 REMARK 465 PRO A 1092 REMARK 465 ASN A 1093 REMARK 465 ASP A 1094 REMARK 465 GLN A 1095 REMARK 465 ALA A 1096 REMARK 465 LEU A 1097 REMARK 465 GLY A 1098 REMARK 465 SER A 1099 REMARK 465 ALA A 1100 REMARK 465 GLY A 1101 REMARK 465 LYS A 1102 REMARK 465 GLY A 1103 REMARK 465 SER A 1104 REMARK 465 ARG A 1105 REMARK 465 LEU A 1106 REMARK 465 PRO A 1107 REMARK 465 ASP A 1108 REMARK 465 LEU A 1109 REMARK 465 GLY A 1110 REMARK 465 SER A 1111 REMARK 465 ASP A 1112 REMARK 465 TYR A 1113 REMARK 465 LYS A 1114 REMARK 465 PRO A 1115 REMARK 465 PRO A 1116 REMARK 465 MET A 1117 REMARK 465 SER A 1118 REMARK 465 GLY A 1119 REMARK 465 SER A 1120 REMARK 465 ASN A 1121 REMARK 465 SER A 1122 REMARK 465 PRO A 1123 REMARK 465 HIS A 1124 REMARK 465 GLY A 1125 REMARK 465 SER A 1126 REMARK 465 PRO A 1127 REMARK 465 THR A 1128 REMARK 465 SER A 1129 REMARK 465 PRO A 1130 REMARK 465 LEU A 1131 REMARK 465 ASP A 1132 REMARK 465 SER A 1133 REMARK 465 ASN A 1134 REMARK 465 GLY A 1135 REMARK 465 THR A 1136 REMARK 465 LYS A 1137 REMARK 465 HIS A 1138 REMARK 465 HIS A 1139 REMARK 465 HIS A 1140 REMARK 465 HIS A 1141 REMARK 465 HIS A 1142 REMARK 465 HIS A 1143 REMARK 465 GLU B 880 REMARK 465 THR B 881 REMARK 465 GLY B 882 REMARK 465 THR B 883 REMARK 465 PRO B 884 REMARK 465 MET B 885 REMARK 465 MET B 886 REMARK 465 ALA B 906 REMARK 465 ASP B 907 REMARK 465 ASN B 908 REMARK 465 SER B 909 REMARK 465 LEU B 910 REMARK 465 PRO B 911 REMARK 465 LYS B 912 REMARK 465 HIS B 913 REMARK 465 GLN B 914 REMARK 465 LYS B 915 REMARK 465 ILE B 916 REMARK 465 THR B 917 REMARK 465 ASP B 918 REMARK 465 SER B 919 REMARK 465 LYS B 965 REMARK 465 GLY B 966 REMARK 465 ARG B 967 REMARK 465 ARG B 968 REMARK 465 SER B 969 REMARK 465 SER B 970 REMARK 465 THR B 971 REMARK 465 LYS B 1084 REMARK 465 ALA B 1085 REMARK 465 ASP B 1086 REMARK 465 SER B 1087 REMARK 465 SER B 1088 REMARK 465 ASP B 1089 REMARK 465 LYS B 1090 REMARK 465 MET B 1091 REMARK 465 PRO B 1092 REMARK 465 ASN B 1093 REMARK 465 ASP B 1094 REMARK 465 GLN B 1095 REMARK 465 ALA B 1096 REMARK 465 LEU B 1097 REMARK 465 GLY B 1098 REMARK 465 SER B 1099 REMARK 465 ALA B 1100 REMARK 465 GLY B 1101 REMARK 465 LYS B 1102 REMARK 465 GLY B 1103 REMARK 465 SER B 1104 REMARK 465 ARG B 1105 REMARK 465 LEU B 1106 REMARK 465 PRO B 1107 REMARK 465 ASP B 1108 REMARK 465 LEU B 1109 REMARK 465 GLY B 1110 REMARK 465 SER B 1111 REMARK 465 ASP B 1112 REMARK 465 TYR B 1113 REMARK 465 LYS B 1114 REMARK 465 PRO B 1115 REMARK 465 PRO B 1116 REMARK 465 MET B 1117 REMARK 465 SER B 1118 REMARK 465 GLY B 1119 REMARK 465 SER B 1120 REMARK 465 ASN B 1121 REMARK 465 SER B 1122 REMARK 465 PRO B 1123 REMARK 465 HIS B 1124 REMARK 465 GLY B 1125 REMARK 465 SER B 1126 REMARK 465 PRO B 1127 REMARK 465 THR B 1128 REMARK 465 SER B 1129 REMARK 465 PRO B 1130 REMARK 465 LEU B 1131 REMARK 465 ASP B 1132 REMARK 465 SER B 1133 REMARK 465 ASN B 1134 REMARK 465 GLY B 1135 REMARK 465 THR B 1136 REMARK 465 LYS B 1137 REMARK 465 HIS B 1138 REMARK 465 HIS B 1139 REMARK 465 HIS B 1140 REMARK 465 HIS B 1141 REMARK 465 HIS B 1142 REMARK 465 HIS B 1143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 920 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 883 146.52 -28.02 REMARK 500 LEU A 944 46.11 -93.39 REMARK 500 SER A 973 -179.37 -68.03 REMARK 500 ASN A1015 20.88 40.84 REMARK 500 LEU B 944 45.75 -92.56 REMARK 500 SER B 973 -179.38 -68.77 REMARK 500 ASN B1015 20.35 41.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2086 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 982 OE1 REMARK 620 2 LYS A1017 O 114.2 REMARK 620 3 SER A1068 N 80.9 104.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B2084 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 982 OE1 REMARK 620 2 LYS B1017 O 111.4 REMARK 620 3 SER B1068 N 82.2 102.1 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BQ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 1 REMARK 900 RELATED ID: 4BQ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 2 REMARK 900 RELATED ID: 4BQ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RGMB-NEO1 COMPLEX FORM 3 REMARK 900 RELATED ID: 4BQ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1, FORM 1 REMARK 900 RELATED ID: 4BQB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FN5 AND FN6 DOMAINS OF NEO1, FORM 2 DBREF 4BQC A 883 1133 UNP P97798 NEO1_MOUSE 883 1133 DBREF 4BQC B 883 1133 UNP P97798 NEO1_MOUSE 883 1133 SEQADV 4BQC GLU A 880 UNP P97798 EXPRESSION TAG SEQADV 4BQC THR A 881 UNP P97798 EXPRESSION TAG SEQADV 4BQC GLY A 882 UNP P97798 EXPRESSION TAG SEQADV 4BQC ASN A 1134 UNP P97798 EXPRESSION TAG SEQADV 4BQC GLY A 1135 UNP P97798 EXPRESSION TAG SEQADV 4BQC THR A 1136 UNP P97798 EXPRESSION TAG SEQADV 4BQC LYS A 1137 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS A 1138 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS A 1139 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS A 1140 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS A 1141 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS A 1142 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS A 1143 UNP P97798 EXPRESSION TAG SEQADV 4BQC GLU B 880 UNP P97798 EXPRESSION TAG SEQADV 4BQC THR B 881 UNP P97798 EXPRESSION TAG SEQADV 4BQC GLY B 882 UNP P97798 EXPRESSION TAG SEQADV 4BQC ASN B 1134 UNP P97798 EXPRESSION TAG SEQADV 4BQC GLY B 1135 UNP P97798 EXPRESSION TAG SEQADV 4BQC THR B 1136 UNP P97798 EXPRESSION TAG SEQADV 4BQC LYS B 1137 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS B 1138 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS B 1139 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS B 1140 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS B 1141 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS B 1142 UNP P97798 EXPRESSION TAG SEQADV 4BQC HIS B 1143 UNP P97798 EXPRESSION TAG SEQRES 1 A 264 GLU THR GLY THR PRO MET MET PRO PRO VAL GLY VAL GLN SEQRES 2 A 264 ALA SER ILE LEU SER HIS ASP THR ILE ARG ILE THR TRP SEQRES 3 A 264 ALA ASP ASN SER LEU PRO LYS HIS GLN LYS ILE THR ASP SEQRES 4 A 264 SER ARG TYR TYR THR VAL ARG TRP LYS THR ASN ILE PRO SEQRES 5 A 264 ALA ASN THR LYS TYR LYS ASN ALA ASN ALA THR THR LEU SEQRES 6 A 264 SER TYR LEU VAL THR GLY LEU LYS PRO ASN THR LEU TYR SEQRES 7 A 264 GLU PHE SER VAL MET VAL THR LYS GLY ARG ARG SER SER SEQRES 8 A 264 THR TRP SER MET THR ALA HIS GLY ALA THR PHE GLU LEU SEQRES 9 A 264 VAL PRO THR SER PRO PRO LYS ASP VAL THR VAL VAL SER SEQRES 10 A 264 LYS GLU GLY LYS PRO ARG THR ILE ILE VAL ASN TRP GLN SEQRES 11 A 264 PRO PRO SER GLU ALA ASN GLY LYS ILE THR GLY TYR ILE SEQRES 12 A 264 ILE TYR TYR SER THR ASP VAL ASN ALA GLU ILE HIS ASP SEQRES 13 A 264 TRP VAL ILE GLU PRO VAL VAL GLY ASN ARG LEU THR HIS SEQRES 14 A 264 GLN ILE GLN GLU LEU THR LEU ASP THR PRO TYR TYR PHE SEQRES 15 A 264 LYS ILE GLN ALA ARG ASN SER LYS GLY MET GLY PRO MET SEQRES 16 A 264 SER GLU ALA VAL GLN PHE ARG THR PRO LYS ALA ASP SER SEQRES 17 A 264 SER ASP LYS MET PRO ASN ASP GLN ALA LEU GLY SER ALA SEQRES 18 A 264 GLY LYS GLY SER ARG LEU PRO ASP LEU GLY SER ASP TYR SEQRES 19 A 264 LYS PRO PRO MET SER GLY SER ASN SER PRO HIS GLY SER SEQRES 20 A 264 PRO THR SER PRO LEU ASP SER ASN GLY THR LYS HIS HIS SEQRES 21 A 264 HIS HIS HIS HIS SEQRES 1 B 264 GLU THR GLY THR PRO MET MET PRO PRO VAL GLY VAL GLN SEQRES 2 B 264 ALA SER ILE LEU SER HIS ASP THR ILE ARG ILE THR TRP SEQRES 3 B 264 ALA ASP ASN SER LEU PRO LYS HIS GLN LYS ILE THR ASP SEQRES 4 B 264 SER ARG TYR TYR THR VAL ARG TRP LYS THR ASN ILE PRO SEQRES 5 B 264 ALA ASN THR LYS TYR LYS ASN ALA ASN ALA THR THR LEU SEQRES 6 B 264 SER TYR LEU VAL THR GLY LEU LYS PRO ASN THR LEU TYR SEQRES 7 B 264 GLU PHE SER VAL MET VAL THR LYS GLY ARG ARG SER SER SEQRES 8 B 264 THR TRP SER MET THR ALA HIS GLY ALA THR PHE GLU LEU SEQRES 9 B 264 VAL PRO THR SER PRO PRO LYS ASP VAL THR VAL VAL SER SEQRES 10 B 264 LYS GLU GLY LYS PRO ARG THR ILE ILE VAL ASN TRP GLN SEQRES 11 B 264 PRO PRO SER GLU ALA ASN GLY LYS ILE THR GLY TYR ILE SEQRES 12 B 264 ILE TYR TYR SER THR ASP VAL ASN ALA GLU ILE HIS ASP SEQRES 13 B 264 TRP VAL ILE GLU PRO VAL VAL GLY ASN ARG LEU THR HIS SEQRES 14 B 264 GLN ILE GLN GLU LEU THR LEU ASP THR PRO TYR TYR PHE SEQRES 15 B 264 LYS ILE GLN ALA ARG ASN SER LYS GLY MET GLY PRO MET SEQRES 16 B 264 SER GLU ALA VAL GLN PHE ARG THR PRO LYS ALA ASP SER SEQRES 17 B 264 SER ASP LYS MET PRO ASN ASP GLN ALA LEU GLY SER ALA SEQRES 18 B 264 GLY LYS GLY SER ARG LEU PRO ASP LEU GLY SER ASP TYR SEQRES 19 B 264 LYS PRO PRO MET SER GLY SER ASN SER PRO HIS GLY SER SEQRES 20 B 264 PRO THR SER PRO LEU ASP SER ASN GLY THR LYS HIS HIS SEQRES 21 B 264 HIS HIS HIS HIS MODRES 4BQC ASN A 940 ASN GLYCOSYLATION SITE HET GU4 C 1 27 HET YYJ C 2 28 HET GU4 D 1 27 HET YYJ D 2 28 HET NAG A2085 14 HET NA A2086 1 HET NA B2084 1 HETNAM GU4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOPYRANOSE HETNAM YYJ 1,3,4,6-TETRA-O-SULFO-BETA-D-FRUCTOFURANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION FORMUL 3 GU4 2(C6 H12 O18 S4) FORMUL 3 YYJ 2(C6 H12 O18 S4) FORMUL 5 NAG C8 H15 N O6 FORMUL 6 NA 2(NA 1+) SHEET 1 AA 3 VAL A 889 ILE A 895 0 SHEET 2 AA 3 ILE A 901 ALA A 906 -1 O ARG A 902 N SER A 894 SHEET 3 AA 3 SER A 945 VAL A 948 -1 O TYR A 946 N ILE A 903 SHEET 1 AB 4 LYS A 937 ALA A 941 0 SHEET 2 AB 4 TYR A 921 THR A 928 -1 O TYR A 922 N ALA A 941 SHEET 3 AB 4 LEU A 956 LYS A 965 -1 O GLU A 958 N LYS A 927 SHEET 4 AB 4 ARG A 968 SER A 969 -1 O ARG A 968 N LYS A 965 SHEET 1 AC 4 LYS A 937 ALA A 941 0 SHEET 2 AC 4 TYR A 921 THR A 928 -1 O TYR A 922 N ALA A 941 SHEET 3 AC 4 LEU A 956 LYS A 965 -1 O GLU A 958 N LYS A 927 SHEET 4 AC 4 ALA A 976 ALA A 979 -1 O ALA A 976 N PHE A 959 SHEET 1 AD 2 ARG A 968 SER A 969 0 SHEET 2 AD 2 LEU A 956 LYS A 965 -1 O LYS A 965 N ARG A 968 SHEET 1 AE 3 LYS A 990 SER A 996 0 SHEET 2 AE 3 ILE A1004 GLN A1009 -1 O ILE A1005 N VAL A 995 SHEET 3 AE 3 THR A1047 ILE A1050 -1 O HIS A1048 N VAL A1006 SHEET 1 AF 4 VAL A1037 VAL A1042 0 SHEET 2 AF 4 GLY A1020 SER A1026 -1 O TYR A1021 N VAL A1041 SHEET 3 AF 4 PRO A1058 ASN A1067 -1 O TYR A1060 N SER A1026 SHEET 4 AF 4 GLY A1070 MET A1074 -1 O GLY A1070 N ASN A1067 SHEET 1 AG 4 VAL A1037 VAL A1042 0 SHEET 2 AG 4 GLY A1020 SER A1026 -1 O TYR A1021 N VAL A1041 SHEET 3 AG 4 PRO A1058 ASN A1067 -1 O TYR A1060 N SER A1026 SHEET 4 AG 4 VAL A1078 ARG A1081 -1 O VAL A1078 N PHE A1061 SHEET 1 AH 2 GLY A1070 MET A1074 0 SHEET 2 AH 2 PRO A1058 ASN A1067 -1 O ALA A1065 N GLY A1072 SHEET 1 BA 3 GLN B 892 ILE B 895 0 SHEET 2 BA 3 ILE B 901 THR B 904 -1 O ARG B 902 N SER B 894 SHEET 3 BA 3 SER B 945 VAL B 948 -1 O TYR B 946 N ILE B 903 SHEET 1 BB 4 LYS B 937 ALA B 941 0 SHEET 2 BB 4 TYR B 921 THR B 928 -1 O TYR B 922 N ALA B 941 SHEET 3 BB 4 LEU B 956 THR B 964 -1 O GLU B 958 N LYS B 927 SHEET 4 BB 4 ALA B 976 ALA B 979 -1 O ALA B 976 N PHE B 959 SHEET 1 BC 3 LYS B 990 SER B 996 0 SHEET 2 BC 3 ILE B1004 GLN B1009 -1 O ILE B1005 N VAL B 995 SHEET 3 BC 3 THR B1047 ILE B1050 -1 O HIS B1048 N VAL B1006 SHEET 1 BD 4 VAL B1037 VAL B1042 0 SHEET 2 BD 4 GLY B1020 SER B1026 -1 O TYR B1021 N VAL B1041 SHEET 3 BD 4 PRO B1058 ASN B1067 -1 O TYR B1060 N SER B1026 SHEET 4 BD 4 GLY B1070 MET B1074 -1 O GLY B1070 N ASN B1067 SHEET 1 BE 4 VAL B1037 VAL B1042 0 SHEET 2 BE 4 GLY B1020 SER B1026 -1 O TYR B1021 N VAL B1041 SHEET 3 BE 4 PRO B1058 ASN B1067 -1 O TYR B1060 N SER B1026 SHEET 4 BE 4 VAL B1078 ARG B1081 -1 O VAL B1078 N PHE B1061 SHEET 1 BF 2 GLY B1070 MET B1074 0 SHEET 2 BF 2 PRO B1058 ASN B1067 -1 O ALA B1065 N GLY B1072 LINK ND2 ASN A 940 C1 NAG A2085 1555 1555 1.43 LINK C1 GU4 C 1 O2 YYJ C 2 1555 1555 1.51 LINK C1 GU4 D 1 O2 YYJ D 2 1555 1555 1.50 LINK OE1 GLU A 982 NA NA A2086 1555 1555 2.88 LINK O LYS A1017 NA NA A2086 1555 1555 2.49 LINK N SER A1068 NA NA A2086 1555 1555 3.12 LINK OE1 GLU B 982 NA NA B2084 1555 1555 2.80 LINK O LYS B1017 NA NA B2084 1555 1555 2.66 LINK N SER B1068 NA NA B2084 1555 1555 3.07 CISPEP 1 THR A 883 PRO A 884 0 -2.52 CISPEP 2 ILE A 930 PRO A 931 0 -0.65 CISPEP 3 ILE B 930 PRO B 931 0 -0.29 CRYST1 96.160 157.840 89.920 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010399 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011121 0.00000 MTRIX1 1 -0.999500 -0.004987 0.030740 95.05000 1 MTRIX2 1 0.005047 -1.000000 0.001890 38.70000 1 MTRIX3 1 0.030730 0.002044 0.999500 -1.49800 1