HEADER HYDROLASE 05-JUN-13 4BRS TITLE STRUCTURE OF WILD TYPE PHAZ7 PHB DEPOLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHB DEPOLYMERASE PHAZ7; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.75; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAUCIMONAS LEMOIGNEI; SOURCE 3 ORGANISM_TAXID: 29443; SOURCE 4 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: WB800 KEYWDS HYDROLASE, CATALYTIC TRIAD, BIOPOLYMER BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.HERMAWAN,B.SUBEDI,A.C.PAPAGEORGIOU,D.JENDROSSEK REVDAT 4 20-DEC-23 4BRS 1 REMARK LINK REVDAT 3 17-JUL-19 4BRS 1 REMARK REVDAT 2 25-DEC-13 4BRS 1 JRNL REVDAT 1 18-SEP-13 4BRS 0 JRNL AUTH D.JENDROSSEK,S.HERMAWAN,B.SUBEDI,A.C.PAPAGEORGIOU JRNL TITL BIOCHEMICAL ANALYSIS AND STRUCTURE DETERMINATION OF JRNL TITL 2 PAUCIMONAS LEMOIGNEI POLY(3-HYDROXYBUTYRATE) (PHB) JRNL TITL 3 DEPOLYMERASE PHAZ7 MUTEINS REVEAL THE PHB BINDING SITE AND JRNL TITL 4 DETAILS OF SUBSTRATE-ENZYME INTERACTIONS. JRNL REF MOL.MICROBIOL. V. 90 649 2013 JRNL REFN ISSN 0950-382X JRNL PMID 24007310 JRNL DOI 10.1111/MMI.12391 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.C.PAPAGEORGIOU,S.HERMAWAN,C.B.SINGH,D.JENDROSSEK REMARK 1 TITL STRUCTURAL BASIS OF POLY(3-HYDROXYBUTYRATE) HYDROLYSIS BY REMARK 1 TITL 2 PHAZ7 DEPOLYMERASE FROM PAUCIMONAS LEMOIGNEI. REMARK 1 REF J.MOL.BIOL. V. 382 1184 2008 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 18706425 REMARK 1 DOI 10.1016/J.JMB.2008.07.078 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 81057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.9246 - 4.8981 0.96 2729 143 0.1591 0.1713 REMARK 3 2 4.8981 - 3.8949 0.94 2670 141 0.1106 0.1289 REMARK 3 3 3.8949 - 3.4046 0.95 2662 140 0.1156 0.1453 REMARK 3 4 3.4046 - 3.0942 0.97 2735 144 0.1196 0.1728 REMARK 3 5 3.0942 - 2.8730 0.97 2737 144 0.1241 0.1671 REMARK 3 6 2.8730 - 2.7039 0.97 2730 144 0.1213 0.1465 REMARK 3 7 2.7039 - 2.5687 0.97 2705 142 0.1171 0.1756 REMARK 3 8 2.5687 - 2.4571 0.97 2710 143 0.1233 0.1641 REMARK 3 9 2.4571 - 2.3626 0.98 2817 148 0.1264 0.1694 REMARK 3 10 2.3626 - 2.2811 0.97 2733 144 0.1244 0.1847 REMARK 3 11 2.2811 - 2.2099 0.97 2677 141 0.1223 0.1479 REMARK 3 12 2.2099 - 2.1468 0.99 2812 148 0.1226 0.1645 REMARK 3 13 2.1468 - 2.0903 0.98 2741 144 0.1292 0.1815 REMARK 3 14 2.0903 - 2.0393 0.98 2752 145 0.1366 0.1789 REMARK 3 15 2.0393 - 1.9930 0.98 2726 143 0.1358 0.1714 REMARK 3 16 1.9930 - 1.9506 0.98 2766 146 0.1376 0.1754 REMARK 3 17 1.9506 - 1.9116 0.96 2701 142 0.1369 0.1642 REMARK 3 18 1.9116 - 1.8756 0.97 2711 143 0.1431 0.1831 REMARK 3 19 1.8756 - 1.8421 0.96 2664 140 0.1451 0.1917 REMARK 3 20 1.8421 - 1.8109 0.95 2699 142 0.1489 0.2098 REMARK 3 21 1.8109 - 1.7817 0.95 2652 140 0.1541 0.2106 REMARK 3 22 1.7817 - 1.7543 0.94 2638 138 0.1504 0.1940 REMARK 3 23 1.7543 - 1.7285 0.94 2587 137 0.1598 0.2031 REMARK 3 24 1.7285 - 1.7042 0.91 2583 135 0.1543 0.1999 REMARK 3 25 1.7042 - 1.6811 0.91 2568 136 0.1563 0.2029 REMARK 3 26 1.6811 - 1.6593 0.90 2476 130 0.1546 0.1936 REMARK 3 27 1.6593 - 1.6386 0.89 2537 133 0.1618 0.2186 REMARK 3 28 1.6386 - 1.6188 0.88 2455 130 0.1685 0.2078 REMARK 3 29 1.6188 - 1.6000 0.74 2031 107 0.1755 0.2360 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5182 REMARK 3 ANGLE : 1.282 7037 REMARK 3 CHIRALITY : 0.078 743 REMARK 3 PLANARITY : 0.007 913 REMARK 3 DIHEDRAL : 12.300 1752 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BRS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290056707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8123 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81064 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 21.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VTV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NAOAC (PH 5.0), 0.2 M MGCL2 AND REMARK 280 18 % W/V PEG 6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 99.85000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 281 REMARK 465 GLN B 282 REMARK 465 ALA B 283 REMARK 465 ASP B 284 REMARK 465 TYR B 285 REMARK 465 ASP B 286 REMARK 465 TRP B 287 REMARK 465 ALA B 288 REMARK 465 ASP B 289 REMARK 465 GLY B 290 REMARK 465 MET B 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 293 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 294 CG OD1 ND2 REMARK 470 ASN A 343 CA C O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2305 O HOH A 2307 1.96 REMARK 500 O HOH B 2361 O HOH B 2399 2.03 REMARK 500 O SER A 170 O HOH A 2387 2.06 REMARK 500 O HOH A 2215 O HOH A 2217 2.07 REMARK 500 O HOH A 2128 O HOH A 2137 2.07 REMARK 500 O HOH A 2342 O HOH A 2345 2.07 REMARK 500 O HOH B 2062 O HOH B 2130 2.07 REMARK 500 O HOH A 2474 O HOH A 2477 2.07 REMARK 500 O TYR A 66 O HOH A 2217 2.09 REMARK 500 O HOH A 2216 O HOH A 2217 2.09 REMARK 500 O HOH A 2099 O HOH A 2106 2.09 REMARK 500 O HOH B 2159 O HOH B 2167 2.09 REMARK 500 O HOH A 2181 O HOH A 2345 2.10 REMARK 500 O HOH B 2220 O HOH B 2230 2.10 REMARK 500 O HOH B 2364 O HOH B 2365 2.10 REMARK 500 O HOH A 2019 O HOH A 2100 2.11 REMARK 500 O HOH B 2158 O HOH B 2304 2.11 REMARK 500 O HOH A 2228 O HOH A 2403 2.11 REMARK 500 O HOH B 2227 O HOH B 2391 2.12 REMARK 500 O HOH A 2414 O HOH A 2416 2.13 REMARK 500 O HOH B 2222 O HOH B 2382 2.13 REMARK 500 O HOH A 2157 O HOH A 2272 2.14 REMARK 500 O HOH A 2073 O HOH A 2149 2.14 REMARK 500 O HOH A 2100 O HOH A 2105 2.14 REMARK 500 O HOH B 2491 O HOH B 2496 2.14 REMARK 500 O HOH B 2020 O HOH B 2030 2.14 REMARK 500 O HOH A 2417 O HOH A 2418 2.15 REMARK 500 O HOH B 2050 O HOH B 2106 2.15 REMARK 500 O HOH A 2049 O HOH A 2525 2.16 REMARK 500 O HOH B 2234 O HOH B 2246 2.16 REMARK 500 O HOH B 2027 O HOH B 2053 2.16 REMARK 500 O HOH A 2061 O HOH A 2062 2.16 REMARK 500 O HOH B 2099 O HOH B 2100 2.16 REMARK 500 O HOH A 2354 O HOH A 2355 2.16 REMARK 500 O HOH A 2399 O HOH A 2400 2.16 REMARK 500 O HOH A 2229 O HOH A 2243 2.17 REMARK 500 O HOH A 2163 O HOH A 2285 2.17 REMARK 500 O HOH B 2248 O HOH B 2415 2.17 REMARK 500 NH2 ARG B 71 O HOH A 2138 2.17 REMARK 500 O HOH B 2063 O HOH B 2543 2.18 REMARK 500 O HOH B 2308 O HOH B 2326 2.18 REMARK 500 O HOH B 2350 O HOH B 2351 2.19 REMARK 500 O HOH B 2315 O HOH B 2321 2.19 REMARK 500 O HOH B 2180 O HOH B 2252 2.19 REMARK 500 O HOH A 2520 O HOH A 2521 2.19 REMARK 500 O HOH B 2194 O HOH B 2498 2.19 REMARK 500 O HOH B 2236 O HOH B 2405 2.19 REMARK 500 O HOH A 2134 O HOH A 2135 2.19 REMARK 500 O HOH A 2116 O HOH A 2118 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2407 O HOH B 2409 2656 2.02 REMARK 500 O HOH A 2163 O HOH A 2331 1554 2.08 REMARK 500 O HOH A 2135 O HOH B 2305 1656 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 82.72 -153.66 REMARK 500 SER A 136 -125.34 52.80 REMARK 500 ARG A 156 -61.20 -93.08 REMARK 500 ALA A 177 31.53 -140.22 REMARK 500 SER A 186 -148.82 -82.73 REMARK 500 ASN A 210 83.33 -154.27 REMARK 500 ALA A 247 80.74 -68.29 REMARK 500 PHE A 251 47.59 -143.81 REMARK 500 ALA A 295 -97.51 -134.46 REMARK 500 PHE B 9 -35.19 -130.01 REMARK 500 THR B 14 115.06 -36.75 REMARK 500 ALA B 23 85.35 -151.05 REMARK 500 SER B 136 -126.50 54.70 REMARK 500 SER B 186 -145.42 -84.12 REMARK 500 ASN B 210 83.59 -153.83 REMARK 500 TYR B 293 74.25 -101.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2019 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A2020 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A2043 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A2047 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A2100 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A2120 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A2131 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH A2162 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A2178 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A2192 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A2565 DISTANCE = 9.05 ANGSTROMS REMARK 525 HOH A2566 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH B2022 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B2040 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B2073 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B2101 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH B2205 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B2319 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B2547 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B2549 DISTANCE = 6.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1344 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 119 OD2 REMARK 620 2 HOH A2564 O 114.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1346 DBREF 4BRS A 1 342 UNP Q939Q9 Q939Q9_PSELE 39 380 DBREF 4BRS B 1 342 UNP Q939Q9 Q939Q9_PSELE 39 380 SEQADV 4BRS ASN A 343 UNP Q939Q9 EXPRESSION TAG SEQADV 4BRS ASN B 343 UNP Q939Q9 EXPRESSION TAG SEQRES 1 A 343 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 A 343 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 A 343 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 A 343 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 A 343 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 A 343 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 A 343 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 A 343 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 A 343 TYR HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 A 343 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 A 343 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 A 343 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 A 343 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 A 343 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 A 343 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 A 343 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 A 343 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 A 343 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 A 343 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 A 343 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 A 343 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 A 343 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 A 343 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 A 343 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 A 343 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 A 343 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 A 343 LYS ALA ALA TYR ASN SEQRES 1 B 343 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 B 343 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 B 343 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 B 343 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 B 343 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 B 343 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 B 343 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 B 343 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 B 343 TYR HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 B 343 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 B 343 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 B 343 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 B 343 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 B 343 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 B 343 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 B 343 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 B 343 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 B 343 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 B 343 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 B 343 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 B 343 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 B 343 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 B 343 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 B 343 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 B 343 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 B 343 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 B 343 LYS ALA ALA TYR ASN HET NA A1343 1 HET MG A1344 1 HET NA B1344 1 HET NA B1345 1 HET CL B1346 1 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 NA 3(NA 1+) FORMUL 4 MG MG 2+ FORMUL 7 CL CL 1- FORMUL 8 HOH *1114(H2 O) HELIX 1 1 ASN A 52 MET A 58 5 7 HELIX 2 2 SER A 72 ARG A 80 1 9 HELIX 3 3 SER A 94 GLY A 99 1 6 HELIX 4 4 SER A 100 ASN A 104 5 5 HELIX 5 5 SER A 107 GLY A 126 1 20 HELIX 6 6 SER A 136 ASN A 150 1 15 HELIX 7 7 ASN A 151 THR A 153 5 3 HELIX 8 8 LEU A 168 TYR A 172 5 5 HELIX 9 9 ALA A 181 GLY A 185 5 5 HELIX 10 10 SER A 220 ARG A 222 5 3 HELIX 11 11 ASP A 223 ARG A 228 1 6 HELIX 12 12 ALA A 238 ASP A 242 5 5 HELIX 13 13 GLY A 254 ALA A 258 5 5 HELIX 14 14 ASP A 286 GLY A 290 5 5 HELIX 15 15 PHE A 307 ASN A 312 1 6 HELIX 16 16 THR A 313 THR A 323 1 11 HELIX 17 17 THR A 326 ALA A 332 5 7 HELIX 18 18 ASN B 52 MET B 58 5 7 HELIX 19 19 SER B 72 ARG B 80 1 9 HELIX 20 20 SER B 94 GLY B 99 1 6 HELIX 21 21 SER B 100 ASN B 104 5 5 HELIX 22 22 SER B 107 GLY B 126 1 20 HELIX 23 23 SER B 136 ASN B 150 1 15 HELIX 24 24 ASN B 151 THR B 153 5 3 HELIX 25 25 SER B 170 GLY B 175 1 6 HELIX 26 26 ALA B 181 GLY B 185 5 5 HELIX 27 27 SER B 220 ARG B 222 5 3 HELIX 28 28 ASP B 223 ARG B 228 1 6 HELIX 29 29 ALA B 238 ASP B 242 5 5 HELIX 30 30 GLY B 254 ALA B 258 5 5 HELIX 31 31 GLY B 296 THR B 301 5 6 HELIX 32 32 PHE B 307 ASN B 312 1 6 HELIX 33 33 THR B 313 THR B 323 1 11 HELIX 34 34 THR B 326 ALA B 332 5 7 SHEET 1 AA 9 THR A 16 TYR A 18 0 SHEET 2 AA 9 GLY A 30 GLY A 32 1 O GLY A 30 N GLN A 17 SHEET 3 AA 9 ILE A 87 VAL A 90 -1 O GLY A 89 N PHE A 31 SHEET 4 AA 9 VAL A 43 ILE A 46 1 O VAL A 43 N PHE A 88 SHEET 5 AA 9 VAL A 130 HIS A 135 1 O ASP A 131 N ILE A 44 SHEET 6 AA 9 VAL A 155 LEU A 161 1 N ARG A 156 O VAL A 130 SHEET 7 AA 9 SER A 232 SER A 237 1 O SER A 232 N PHE A 158 SHEET 8 AA 9 VAL A 268 ASN A 273 1 N LYS A 269 O PHE A 233 SHEET 9 AA 9 ALA A 340 ALA A 341 -1 O ALA A 340 N ASN A 273 SHEET 1 AB 2 GLY A 201 TYR A 203 0 SHEET 2 AB 2 VAL A 206 VAL A 208 -1 O VAL A 206 N TYR A 203 SHEET 1 BA 9 THR B 16 TYR B 18 0 SHEET 2 BA 9 GLY B 30 GLY B 32 1 O GLY B 30 N GLN B 17 SHEET 3 BA 9 ILE B 87 VAL B 90 -1 O GLY B 89 N PHE B 31 SHEET 4 BA 9 VAL B 43 ILE B 46 1 O VAL B 43 N PHE B 88 SHEET 5 BA 9 VAL B 130 HIS B 135 1 O ASP B 131 N ILE B 44 SHEET 6 BA 9 VAL B 155 LEU B 161 1 N ARG B 156 O VAL B 130 SHEET 7 BA 9 SER B 232 SER B 237 1 O SER B 232 N PHE B 158 SHEET 8 BA 9 VAL B 268 ASN B 273 1 N LYS B 269 O PHE B 233 SHEET 9 BA 9 ALA B 340 ALA B 341 -1 O ALA B 340 N ASN B 273 SHEET 1 BB 2 GLY B 201 TYR B 203 0 SHEET 2 BB 2 VAL B 206 VAL B 208 -1 O VAL B 206 N TYR B 203 SSBOND 1 CYS A 3 CYS A 11 1555 1555 2.06 SSBOND 2 CYS A 36 CYS A 85 1555 1555 2.03 SSBOND 3 CYS A 171 CYS A 184 1555 1555 2.05 SSBOND 4 CYS A 246 CYS A 255 1555 1555 2.04 SSBOND 5 CYS A 325 CYS A 330 1555 1555 2.04 SSBOND 6 CYS B 3 CYS B 11 1555 1555 2.03 SSBOND 7 CYS B 36 CYS B 85 1555 1555 2.05 SSBOND 8 CYS B 171 CYS B 184 1555 1555 2.06 SSBOND 9 CYS B 246 CYS B 255 1555 1555 2.06 SSBOND 10 CYS B 325 CYS B 330 1555 1555 2.05 LINK OD2 ASP A 119 MG MG A1344 1555 1555 2.93 LINK MG MG A1344 O HOH A2564 1555 1555 2.66 LINK NA NA B1345 O HOH B2543 1555 1555 2.95 SITE 1 AC1 2 ASN A 83 ASP A 84 SITE 1 AC2 5 GLY A 65 TYR A 66 THR A 116 ASP A 119 SITE 2 AC2 5 HOH A2564 SITE 1 AC3 2 THR B 41 GLN B 129 SITE 1 AC4 3 ASN B 83 ASP B 84 HOH B2543 SITE 1 AC5 3 ALA B 23 PRO B 24 GLY B 25 CRYST1 41.400 199.700 44.200 90.00 114.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024155 0.000000 0.010856 0.00000 SCALE2 0.000000 0.005008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024804 0.00000