HEADER SIGNALING PROTEIN 11-JUN-13 4BSO TITLE CRYSTAL STRUCTURE OF R-SPONDIN 1 (FU1FU2) - NATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: R-SPONDIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FU1FU2, RESIDUES 31-146; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS SIGNALING PROTEIN, ADULT STEM CELL, LEUCINE-RICH REPEAT G-PROTEIN KEYWDS 2 COUPLED RECEPTOR, FURIN DOMAIN, WNT SIGNALING, CONGENITAL ANONYCHIA EXPDTA X-RAY DIFFRACTION AUTHOR W.C.PENG,W.DE LAU,F.FORNERIS,J.C.M.GRANNEMAN,M.HUCH,H.CLEVERS,P.GROS REVDAT 2 24-JUL-13 4BSO 1 JRNL REVDAT 1 19-JUN-13 4BSO 0 JRNL AUTH W.C.PENG,W.DE LAU,F.FORNERIS,J.C.M.GRANNEMAN,M.HUCH, JRNL AUTH 2 H.CLEVERS,P.GROS JRNL TITL STRUCTURE OF STEM CELL GROWTH FACTOR R-SPONDIN 1 IN COMPLEX JRNL TITL 2 WITH THE ECTODOMAIN OF ITS RECEPTOR LGR5. JRNL REF CELL REP. V. 3 1885 2013 JRNL REFN ISSN 2211-1247 JRNL PMID 23809763 JRNL DOI 10.1016/J.CELREP.2013.06.009 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.200 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.480 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.36 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.98 REMARK 3 NUMBER OF REFLECTIONS : 5872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2139 REMARK 3 R VALUE (WORKING SET) : 0.2121 REMARK 3 FREE R VALUE : 0.2499 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.5 REMARK 3 FREE R VALUE TEST SET COUNT : 266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4837 - 2.7717 1.00 2872 140 0.2082 0.2391 REMARK 3 2 2.7717 - 2.2001 1.00 2734 126 0.2254 0.2929 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.24 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 817 REMARK 3 ANGLE : 2.124 1080 REMARK 3 CHIRALITY : 0.133 112 REMARK 3 PLANARITY : 0.009 143 REMARK 3 DIHEDRAL : 18.333 310 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 8 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7602 -17.6447 -4.7945 REMARK 3 T TENSOR REMARK 3 T11: 0.7249 T22: 0.3048 REMARK 3 T33: 0.1908 T12: -0.0507 REMARK 3 T13: -0.0223 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.0391 L22: 4.9522 REMARK 3 L33: 3.1672 L12: -0.7505 REMARK 3 L13: 0.7433 L23: -2.6510 REMARK 3 S TENSOR REMARK 3 S11: -0.2089 S12: -0.1863 S13: -0.0623 REMARK 3 S21: 0.3595 S22: -0.6407 S23: -0.4570 REMARK 3 S31: 1.4973 S32: 0.2226 S33: -0.6405 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 28 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3339 -14.0050 -14.5979 REMARK 3 T TENSOR REMARK 3 T11: 0.3368 T22: 0.3337 REMARK 3 T33: 0.2565 T12: -0.0525 REMARK 3 T13: -0.0299 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 0.0499 L22: 0.1950 REMARK 3 L33: 0.1411 L12: 0.1048 REMARK 3 L13: 0.0489 L23: 0.1020 REMARK 3 S TENSOR REMARK 3 S11: 0.2637 S12: 0.1732 S13: -0.3675 REMARK 3 S21: -0.3536 S22: -0.2459 S23: 0.0758 REMARK 3 S31: -0.3187 S32: 0.3507 S33: -0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 36 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5520 -11.3377 -6.9056 REMARK 3 T TENSOR REMARK 3 T11: 0.8839 T22: 2.3062 REMARK 3 T33: 1.2628 T12: 0.0212 REMARK 3 T13: 0.0117 T23: 0.0772 REMARK 3 L TENSOR REMARK 3 L11: 0.0213 L22: 0.0773 REMARK 3 L33: 0.0788 L12: 0.0124 REMARK 3 L13: 0.0023 L23: 0.0772 REMARK 3 S TENSOR REMARK 3 S11: -0.5954 S12: -0.2130 S13: 0.1550 REMARK 3 S21: -0.5331 S22: -0.0450 S23: -0.4930 REMARK 3 S31: -0.0344 S32: 0.0333 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 42 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4447 -16.0191 -17.2416 REMARK 3 T TENSOR REMARK 3 T11: 0.3285 T22: 0.3935 REMARK 3 T33: 0.2731 T12: 0.0007 REMARK 3 T13: -0.0985 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: -0.0012 L22: 3.5616 REMARK 3 L33: 0.4169 L12: 0.0286 REMARK 3 L13: 0.0041 L23: -1.2189 REMARK 3 S TENSOR REMARK 3 S11: -0.2124 S12: -0.2485 S13: 0.5941 REMARK 3 S21: -0.8617 S22: -0.0708 S23: 0.3077 REMARK 3 S31: 0.1457 S32: -0.0036 S33: -0.1585 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 53 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1485 -7.7531 -16.8424 REMARK 3 T TENSOR REMARK 3 T11: 0.2270 T22: 0.1494 REMARK 3 T33: 0.2441 T12: -0.0012 REMARK 3 T13: -0.0644 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 1.8362 L22: 1.6268 REMARK 3 L33: 4.6208 L12: 0.5236 REMARK 3 L13: 1.4399 L23: 2.6749 REMARK 3 S TENSOR REMARK 3 S11: 0.4980 S12: 0.5180 S13: -0.1646 REMARK 3 S21: -0.4845 S22: 0.5391 S23: 0.1931 REMARK 3 S31: 0.2406 S32: 0.2804 S33: 0.6927 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 63 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0410 -1.9962 -22.8360 REMARK 3 T TENSOR REMARK 3 T11: 0.2969 T22: 0.1430 REMARK 3 T33: 0.3937 T12: 0.0279 REMARK 3 T13: -0.2334 T23: 0.1003 REMARK 3 L TENSOR REMARK 3 L11: 1.2283 L22: 0.8142 REMARK 3 L33: 1.3534 L12: -0.3439 REMARK 3 L13: -0.1239 L23: -0.2820 REMARK 3 S TENSOR REMARK 3 S11: 0.2723 S12: -0.2292 S13: -0.2620 REMARK 3 S21: -0.6706 S22: 0.1790 S23: 0.7822 REMARK 3 S31: 0.5683 S32: -0.1537 S33: 0.4001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 82 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9523 6.5190 -28.5517 REMARK 3 T TENSOR REMARK 3 T11: 0.5027 T22: 0.2662 REMARK 3 T33: 0.2685 T12: -0.0178 REMARK 3 T13: -0.1199 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.2426 L22: 0.3585 REMARK 3 L33: 0.2449 L12: 0.0576 REMARK 3 L13: 0.1041 L23: -0.1677 REMARK 3 S TENSOR REMARK 3 S11: -0.0850 S12: -0.0390 S13: 0.0499 REMARK 3 S21: -0.4159 S22: 0.0330 S23: -0.1256 REMARK 3 S31: 0.6564 S32: -0.0620 S33: 0.0033 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 97 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8622 10.1537 -41.9493 REMARK 3 T TENSOR REMARK 3 T11: 0.7529 T22: 0.4912 REMARK 3 T33: 0.9001 T12: -0.0174 REMARK 3 T13: -0.0957 T23: -0.2666 REMARK 3 L TENSOR REMARK 3 L11: 4.6589 L22: 0.9654 REMARK 3 L33: 0.4503 L12: -2.0617 REMARK 3 L13: 1.0245 L23: -0.5668 REMARK 3 S TENSOR REMARK 3 S11: 0.2845 S12: 0.8409 S13: 0.4107 REMARK 3 S21: -0.3361 S22: -0.3310 S23: -1.0706 REMARK 3 S31: -0.0846 S32: 0.2120 S33: -0.2310 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BSO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-13. REMARK 100 THE PDBE ID CODE IS EBI-57252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5873 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.20 REMARK 200 RESOLUTION RANGE LOW (A) : 34.40 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.4 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.3 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 18.58000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.95000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.23000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 18.58000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.95000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.23000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 18.58000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.95000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.23000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 18.58000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 31.95000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.23000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ARG A 1 REMARK 465 ILE A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 GLU A 101 REMARK 465 GLY A 102 REMARK 465 SER A 103 REMARK 465 SER A 104 REMARK 465 ALA A 105 REMARK 465 ALA A 106 REMARK 465 ASN A 107 REMARK 465 GLY A 108 REMARK 465 THR A 109 REMARK 465 SER A 114 REMARK 465 PRO A 115 REMARK 465 ALA A 116 REMARK 465 ALA A 117 REMARK 465 ALA A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 8 CG CD OE1 NE2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 MET A 110 CG SD CE REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 10 CB CYS A 17 1.43 REMARK 500 N LEU A 90 O HOH A 2018 2.15 REMARK 500 O HOH A 2003 O HOH A 2004 1.86 REMARK 500 O HOH A 2006 O HOH A 2007 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 EDO A 1114 O2 EDO A 1114 2555 2.03 REMARK 500 O2 EDO A 1114 O2 EDO A 1114 2555 1.90 REMARK 500 O HOH A 2001 O HOH A 2001 3555 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 17 CB CYS A 17 SG -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 17 N - CA - CB ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 10 169.63 94.20 REMARK 500 ARG A 36 33.74 -57.79 REMARK 500 CYS A 67 59.49 -156.96 REMARK 500 GLU A 70 123.72 -38.14 REMARK 500 HIS A 71 17.50 58.75 REMARK 500 LYS A 83 118.81 -172.71 REMARK 500 CYS A 99 60.49 123.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 97 ALA A 98 34.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 CYS A 99 21.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1120 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BSP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF R-SPONDIN 1 (FU1FU2) - HOLMIUM REMARK 900 SOAK REMARK 900 RELATED ID: 4BSR RELATED DB: PDB REMARK 900 STRUCTURE OF THE ECTODOMAIN OF LGR5 IN COMPLEX WITH REMARK 900 R-SPONDIN-1 (FU1FU2) IN P22121 CRYSTAL FORM REMARK 900 RELATED ID: 4BSS RELATED DB: PDB REMARK 900 STRUCTURE OF THE ECTODOMAIN OF LGR5 IN COMPLEX WITH REMARK 900 R-SPONDIN-1 (FU1FU2) IN P21 CRYSTAL FORM REMARK 900 RELATED ID: 4BST RELATED DB: PDB REMARK 900 STRUCTURE OF THE ECTODOMAIN OF LGR5 IN COMPLEX WITH REMARK 900 R-SPONDIN-1 (FU1FU2) IN P6122 CRYSTAL FORM REMARK 900 RELATED ID: 4BSU RELATED DB: PDB REMARK 900 STRUCTURE OF THE ECTODOMAIN OF LGR5 IN COMPLEX WITH REMARK 900 R-SPONDIN-1 (FU1FU2) IN C2 CRYSTAL FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-TERMINAL GS AND C-TERMINAL AAA ADDED BY CLONING PLASMID, REMARK 999 PLUS C-TERMINAL 6XHIS TAG DBREF 4BSO A 1 116 UNP Q2MKA7 RSPO1_HUMAN 31 146 SEQADV 4BSO GLY A -1 UNP Q2MKA7 EXPRESSION TAG SEQADV 4BSO SER A 0 UNP Q2MKA7 EXPRESSION TAG SEQADV 4BSO ALA A 117 UNP Q2MKA7 EXPRESSION TAG SEQADV 4BSO ALA A 118 UNP Q2MKA7 EXPRESSION TAG SEQADV 4BSO HIS A 119 UNP Q2MKA7 EXPRESSION TAG SEQADV 4BSO HIS A 120 UNP Q2MKA7 EXPRESSION TAG SEQADV 4BSO HIS A 121 UNP Q2MKA7 EXPRESSION TAG SEQADV 4BSO HIS A 122 UNP Q2MKA7 EXPRESSION TAG SEQADV 4BSO HIS A 123 UNP Q2MKA7 EXPRESSION TAG SEQADV 4BSO HIS A 124 UNP Q2MKA7 EXPRESSION TAG SEQRES 1 A 126 GLY SER ARG ILE SER ALA GLU GLY SER GLN ALA CYS ALA SEQRES 2 A 126 LYS GLY CYS GLU LEU CYS SER GLU VAL ASN GLY CYS LEU SEQRES 3 A 126 LYS CYS SER PRO LYS LEU PHE ILE LEU LEU GLU ARG ASN SEQRES 4 A 126 ASP ILE ARG GLN VAL GLY VAL CYS LEU PRO SER CYS PRO SEQRES 5 A 126 PRO GLY TYR PHE ASP ALA ARG ASN PRO ASP MET ASN LYS SEQRES 6 A 126 CYS ILE LYS CYS LYS ILE GLU HIS CYS GLU ALA CYS PHE SEQRES 7 A 126 SER HIS ASN PHE CYS THR LYS CYS LYS GLU GLY LEU TYR SEQRES 8 A 126 LEU HIS LYS GLY ARG CYS TYR PRO ALA CYS PRO GLU GLY SEQRES 9 A 126 SER SER ALA ALA ASN GLY THR MET GLU CYS SER SER PRO SEQRES 10 A 126 ALA ALA ALA HIS HIS HIS HIS HIS HIS HET EDO A1114 4 HET EDO A1115 4 HET EDO A1116 4 HET EDO A1117 4 HET EDO A1118 8 HET CL A1119 1 HET CL A1120 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 5(C2 H6 O2) FORMUL 3 CL 2(CL 1-) FORMUL 4 HOH *20(H2 O) SHEET 1 AA 2 CYS A 14 SER A 18 0 SHEET 2 AA 2 GLY A 22 CYS A 26 -1 O GLY A 22 N SER A 18 SHEET 1 AB 4 VAL A 42 LEU A 46 0 SHEET 2 AB 4 PHE A 31 GLU A 35 -1 O PHE A 31 N LEU A 46 SHEET 3 AB 4 ASN A 62 LYS A 66 1 O ASN A 62 N ILE A 32 SHEET 4 AB 4 TYR A 53 ARG A 57 -1 O PHE A 54 N ILE A 65 SHEET 1 AC 2 CYS A 72 SER A 77 0 SHEET 2 AC 2 PHE A 80 CYS A 84 -1 O PHE A 80 N SER A 77 SHEET 1 AD 2 TYR A 89 HIS A 91 0 SHEET 2 AD 2 ARG A 94 TYR A 96 -1 O ARG A 94 N HIS A 91 SSBOND 1 CYS A 10 CYS A 17 1555 1555 2.10 SSBOND 2 CYS A 14 CYS A 23 1555 1555 2.10 SSBOND 3 CYS A 26 CYS A 45 1555 1555 2.12 SSBOND 4 CYS A 49 CYS A 64 1555 1555 2.05 SSBOND 5 CYS A 67 CYS A 75 1555 1555 2.11 SSBOND 6 CYS A 72 CYS A 81 1555 1555 2.13 SSBOND 7 CYS A 84 CYS A 95 1555 1555 2.05 SSBOND 8 CYS A 99 CYS A 112 1555 1555 2.04 CISPEP 1 GLN A 8 ALA A 9 0 7.71 CISPEP 2 ASP A 38 ILE A 39 0 -2.33 CISPEP 3 ALA A 98 CYS A 99 0 -2.46 SITE 1 AC1 4 ALA A 56 CYS A 75 PHE A 76 THR A 82 SITE 1 AC2 8 LYS A 25 CYS A 26 SER A 27 PRO A 28 SITE 2 AC2 8 LEU A 30 ILE A 32 MET A 61 ASN A 62 SITE 1 AC3 3 CYS A 67 CYS A 72 EDO A1117 SITE 1 AC4 1 EDO A1116 SITE 1 AC5 2 SER A 77 HIS A 78 SITE 1 AC6 2 LYS A 29 GLY A 52 SITE 1 AC7 1 CYS A 84 CRYST1 37.160 63.900 92.460 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026911 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015649 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010815 0.00000