HEADER LYASE 12-JUN-13 4BT2 TITLE ACETOLACTATE DECARBOXYLASE WITH A BOUND 1,2-ETHANEDIOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-ACETOLACTATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACETOLACTATE DECARBOXYLASE, ALDC; COMPND 5 EC: 4.1.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS BREVIS; SOURCE 3 ORGANISM_TAXID: 1393; SOURCE 4 ATCC: 11031; SOURCE 5 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JA222; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: TOC46; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJA199 KEYWDS LYASE, ACETOIN BIOSYNTHESIS, STEREOSELECTIVE DECARBOXYLATION, KEYWDS 2 BIFUNCTIONAL ENZYME EXPDTA X-RAY DIFFRACTION AUTHOR V.A MARLOW,D.REA,S.NAJMUDIN,M.WILLS,V.FULOP REVDAT 2 30-OCT-13 4BT2 1 JRNL REVDAT 1 11-SEP-13 4BT2 0 JRNL AUTH V.A MARLOW,D.REA,S.NAJMUDIN,M.WILLS,V.FULOP JRNL TITL STRUCTURE AND MECHANISM OF ACETOLACTATE DECARBOXYLASE JRNL REF ACS CHEM.BIOL. V. 8 2339 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23985082 JRNL DOI 10.1021/CB400429 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 95.99 REMARK 3 NUMBER OF REFLECTIONS : 96577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18933 REMARK 3 R VALUE (WORKING SET) : 0.18858 REMARK 3 FREE R VALUE : 0.20776 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.0 REMARK 3 FREE R VALUE TEST SET COUNT : 4015 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.100 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.129 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5772 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.363 REMARK 3 BIN FREE R VALUE SET COUNT : 225 REMARK 3 BIN FREE R VALUE : 0.352 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.423 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.38 REMARK 3 B22 (A**2) : -0.38 REMARK 3 B33 (A**2) : 0.57 REMARK 3 B12 (A**2) : -0.19 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1934 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2616 ; 1.640 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 236 ; 6.759 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;36.186 ;25.761 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 344 ;10.816 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;16.793 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 296 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1452 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1181 ; 0.971 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1922 ; 1.696 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 753 ; 2.523 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 694 ; 3.924 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 100 REMARK 3 RESIDUE RANGE : A 146 A 165 REMARK 3 RESIDUE RANGE : A 224 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8020 24.2110 79.7600 REMARK 3 T TENSOR REMARK 3 T11: 0.0663 T22: 0.0945 REMARK 3 T33: 0.0079 T12: -0.0128 REMARK 3 T13: -0.0050 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.5345 L22: 0.1835 REMARK 3 L33: 0.6637 L12: 0.1030 REMARK 3 L13: -0.0559 L23: 0.1349 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.0094 S13: -0.0058 REMARK 3 S21: 0.0120 S22: 0.0099 S23: 0.0160 REMARK 3 S31: 0.0509 S32: -0.0551 S33: -0.0119 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 145 REMARK 3 RESIDUE RANGE : A 166 A 223 REMARK 3 RESIDUE RANGE : A 245 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4090 36.1850 85.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.0860 T22: 0.0953 REMARK 3 T33: 0.0161 T12: -0.0150 REMARK 3 T13: -0.0019 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.3295 L22: 0.2006 REMARK 3 L33: 0.6237 L12: 0.0141 REMARK 3 L13: 0.2625 L23: 0.1584 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0070 S13: 0.0354 REMARK 3 S21: 0.0140 S22: 0.0166 S23: 0.0204 REMARK 3 S31: -0.0737 S32: 0.0411 S33: -0.0059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4BT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-13. REMARK 100 THE PDBE ID CODE IS EBI-57296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100592 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.10 REMARK 200 RESOLUTION RANGE LOW (A) : 41.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 8.4 REMARK 200 R MERGE (I) : 0.11 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.3 REMARK 200 R MERGE FOR SHELL (I) : 0.23 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TRIMETHYLAMINE N-OXIDE REMARK 280 (TMAO), 0.1 M TRIS PH 8.5, 28-33 PEG 2K MME REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.60000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.30000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.30000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 132.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 132.60000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 GLN A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 LYS A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ASN A 18 REMARK 465 PRO A 19 REMARK 465 LYS A 257 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2057 O HOH A 2072 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2036 O HOH A 2036 6555 0.39 REMARK 500 O HOH A 2113 O HOH A 2113 4466 0.30 REMARK 500 O HOH A 2239 O HOH A 2239 4466 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 42 CB ASP A 42 CG 0.212 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 42 CB - CG - OD1 ANGL. DEV. = 18.6 DEGREES REMARK 500 ASP A 42 OD1 - CG - OD2 ANGL. DEV. = -19.8 DEGREES REMARK 500 TYR A 180 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 29 -171.43 68.30 REMARK 500 PHE A 93 122.11 -172.32 REMARK 500 GLU A 125 -49.09 71.83 REMARK 500 SER A 254 31.01 -143.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE A 124 23.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 253 OE1 REMARK 620 2 EDO A 302 O1 80.3 REMARK 620 3 HIS A 196 NE2 178.0 97.7 REMARK 620 4 EDO A 302 O2 80.1 71.7 99.2 REMARK 620 5 HIS A 194 NE2 87.5 159.7 94.4 90.3 REMARK 620 6 HIS A 207 ND1 84.3 96.9 96.1 162.0 98.0 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AC" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BT3 RELATED DB: PDB REMARK 900 ACETOLACTATE DECARBOXYLASE WITH A BOUND (2R,3R)-2,3- REMARK 900 DIHYDROXY-2-METHYLBUTANOIC ACID REMARK 900 RELATED ID: 4BT4 RELATED DB: PDB REMARK 900 ACETOLACTATE DECARBOXYLASE WITH A BOUND (2S,3S)-2,3- REMARK 900 DIHYDROXY-2-METHYLBUTANOIC ACID REMARK 900 RELATED ID: 4BT5 RELATED DB: PDB REMARK 900 ACETOLACTATE DECARBOXYLASE WITH A BOUND (2S,3R)-2,3- REMARK 900 DIHYDROXY-2-METHYLBUTANOIC ACID REMARK 900 RELATED ID: 4BT6 RELATED DB: PDB REMARK 900 ACETOLACTATE DECARBOXYLASE WITH A BOUND GLYCEROL REMARK 900 RELATED ID: 4BT7 RELATED DB: PDB REMARK 900 ACETOLACTATE DECARBOXYLASE WITH A BOUND PHOSPHATE ION DBREF 4BT2 A 1 257 UNP P23616 ALDC_BREBE 29 285 SEQRES 1 A 257 THR VAL PRO ALA PRO PRO ALA LYS GLN GLU SER LYS PRO SEQRES 2 A 257 ALA VAL ALA ALA ASN PRO ALA PRO LYS ASN VAL LEU PHE SEQRES 3 A 257 GLN TYR SER THR ILE ASN ALA LEU MET LEU GLY GLN PHE SEQRES 4 A 257 GLU GLY ASP LEU THR LEU LYS ASP LEU LYS LEU ARG GLY SEQRES 5 A 257 ASP MET GLY LEU GLY THR ILE ASN ASP LEU ASP GLY GLU SEQRES 6 A 257 MET ILE GLN MET GLY THR LYS PHE TYR GLN ILE ASP SER SEQRES 7 A 257 THR GLY LYS LEU SER GLU LEU PRO GLU SER VAL LYS THR SEQRES 8 A 257 PRO PHE ALA VAL THR THR HIS PHE GLU PRO LYS GLU LYS SEQRES 9 A 257 THR THR LEU THR ASN VAL GLN ASP TYR ASN GLN LEU THR SEQRES 10 A 257 LYS MET LEU GLU GLU LYS PHE GLU ASN LYS ASN VAL PHE SEQRES 11 A 257 TYR ALA VAL LYS LEU THR GLY THR PHE LYS MET VAL LYS SEQRES 12 A 257 ALA ARG THR VAL PRO LYS GLN THR ARG PRO TYR PRO GLN SEQRES 13 A 257 LEU THR GLU VAL THR LYS LYS GLN SER GLU PHE GLU PHE SEQRES 14 A 257 LYS ASN VAL LYS GLY THR LEU ILE GLY PHE TYR THR PRO SEQRES 15 A 257 ASN TYR ALA ALA ALA LEU ASN VAL PRO GLY PHE HIS LEU SEQRES 16 A 257 HIS PHE ILE THR GLU ASP LYS THR SER GLY GLY HIS VAL SEQRES 17 A 257 LEU ASN LEU GLN PHE ASP ASN ALA ASN LEU GLU ILE SER SEQRES 18 A 257 PRO ILE HIS GLU PHE ASP VAL GLN LEU PRO HIS THR ASP SEQRES 19 A 257 ASP PHE ALA HIS SER ASP LEU THR GLN VAL THR THR SER SEQRES 20 A 257 GLN VAL HIS GLN ALA GLU SER GLU ARG LYS HET ZN A 301 1 HET EDO A 302 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *324(H2 O) HELIX 1 1 THR A 30 LEU A 36 1 7 HELIX 2 2 LEU A 45 LYS A 49 1 5 HELIX 3 3 LEU A 50 GLY A 52 5 3 HELIX 4 4 ILE A 59 ASP A 63 5 5 HELIX 5 5 ASP A 112 GLU A 125 1 14 HELIX 6 6 GLN A 156 LYS A 162 1 7 HELIX 7 7 PRO A 182 ALA A 186 5 5 HELIX 8 8 THR A 233 SER A 239 1 7 HELIX 9 9 THR A 245 SER A 254 1 10 SHEET 1 AA 7 LEU A 82 GLU A 84 0 SHEET 2 AA 7 LYS A 72 ILE A 76 -1 O GLN A 75 N SER A 83 SHEET 3 AA 7 GLU A 65 MET A 69 -1 O GLU A 65 N ILE A 76 SHEET 4 AA 7 MET A 54 GLY A 57 -1 O GLY A 55 N GLN A 68 SHEET 5 AA 7 ALA A 94 THR A 96 -1 O VAL A 95 N LEU A 56 SHEET 6 AA 7 LEU A 25 TYR A 28 -1 O PHE A 26 N THR A 96 SHEET 7 AA 7 PHE A 226 GLN A 229 1 O ASP A 227 N GLN A 27 SHEET 1 AB 2 LEU A 43 THR A 44 0 SHEET 2 AB 2 LYS A 90 THR A 91 -1 O THR A 91 N LEU A 43 SHEET 1 AC 6 GLU A 103 VAL A 110 0 SHEET 2 AC 6 GLY A 205 ILE A 223 -1 O PHE A 213 N VAL A 110 SHEET 3 AC 6 GLY A 192 THR A 199 -1 O LEU A 195 N VAL A 208 SHEET 4 AC 6 SER A 165 THR A 181 -1 O THR A 175 N ILE A 198 SHEET 5 AC 6 PHE A 130 THR A 146 -1 O TYR A 131 N TYR A 180 SHEET 6 AC 6 GLU A 103 VAL A 110 LINK ZN ZN A 301 OE1 GLU A 253 1555 1555 2.33 LINK ZN ZN A 301 ND1 HIS A 207 1555 1555 2.25 LINK ZN ZN A 301 NE2 HIS A 194 1555 1555 2.22 LINK ZN ZN A 301 NE2 HIS A 196 1555 1555 2.37 LINK O2 EDO A 302 ZN ZN A 301 1555 1555 2.41 LINK O1 EDO A 302 ZN ZN A 301 1555 1555 2.25 CISPEP 1 ARG A 152 PRO A 153 0 -2.50 SITE 1 AC1 5 HIS A 194 HIS A 196 HIS A 207 GLU A 253 SITE 2 AC1 5 EDO A 302 SITE 1 AC2 8 GLY A 57 GLU A 65 ARG A 145 HIS A 194 SITE 2 AC2 8 HIS A 196 HIS A 207 GLU A 253 ZN A 301 CRYST1 46.950 46.950 198.900 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021299 0.012297 0.000000 0.00000 SCALE2 0.000000 0.024594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005028 0.00000